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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0632200 |
| Transcript ID | LotjaGi1g1v0632200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor Inducer of CBF expression 1; TAIR: AT3G26744.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1; TrEMBL-Plants: tr|C0JP29|C0JP29_LOTJA Putative basic helix-loop-helix protein BHLH23; Found in the gene: LotjaGi1g1v0632200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118619360..118623139) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACTGAAGAAGAGTTAGAGGACAGCAAAGCAGAAGAAGAAACACACTTGGATAAACCACACCCAAACCAGCCGTTC CCTCTCCATTCATTTCCTTTTCTTTTCTTTTCTTTCCCCACACAACAAACAAACACAACACAACACAACACACTCTCACT TCATCACTACATAACGTTCGAACCTCCGAAATCATTCACCCTTTTTCTCTGCTACACCTTTCTTCTCTCAAATCATGTTC CTCTGACCACAAAACCAGACAAAAATCCCTTCACCCTTCTCTCTCCCATGGAGGGTTTCACGCTTCCCCTACCACCAAGA CCTCACACCACCACCCTTCAATGGATGGAACAACAACAGCAACAGCAACAACAACAACAACAACAACTGGTAGAAGCTAA GCATCACAACGAAGACGACATTGCCATTGCCATTGCCATGGCTGGTGGTACCCCTCTTCATTTCTTCAAACCCATGCCAG AATCTGAACCTGACTACTACAACATCAGCTCAGCAATTGCAAACACTAATGGTGTTAACATAAACAACCCCTTTGCTTCA ATTTCCAACCCAGCTACCACTGATAGCTTCGTCATGCACCAGACCCTGAACATGGACTCTTTCAATCTTGACCCGTCAAA TTCACAAGGTTTTTTCAATAGCAACAGTTTTGAAACTGGATTTGACAGTGGATTCTTCATGGGTGGGAGCAGCAACGCTT CAAACTCCCCTGCTCTGATGGGATTCTCTCAGGGTAATCAGATGGGTACCCTCGATCTGAGTTCGTGCTCTGAGTTTCCT CCTCCGGGTCTTGAACTTGAAGGGTTTGGTGCTCCGAGGGCTCTTGAGGCGGCGCAGCAGCCGACGCTGTTTCAGAAGCG GAGAGGGTCGGTGGAGATTTCGAGGTTGGAGACGGTGAGGAAGAAGGGGAGGAAGTGGGAAGATGGGGATGTTGAGGCTG ATTTTGATGATTCTGGATTGAATTATGAGTCTGATGAGAATGGGAATGATTTGAACTCAAATGCCACCACTGTCTCTGGT GGAGACCACAAGGGGAAGAAGAAGGGTCTCCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGTAGGAAGAAACTCAATGA TAGGTTGTACATGCTCAGGTCTGTTGTGCCAAAAATTAGCAAGGTATGGAAAATTTTAGCTCAGTTTTTCTGTTGGTTTT TTTTTTAGTGATTTTTGATTTTATAGAATTTGTACCTTTGATTCGTTTTTCCCTGAAAAAAATGTTTCAAGCATGTTAGC TTCTATAATGAGAAATGTTGTTTGACACTTATATTTGGGGAATCTGGTGTGTGGTGTCCTGTATTCATGATCATGGTTTT AAATTATGGTTGTGTTTGTGGTCATGGTTGCTGCACAATCCTTGAAATTGAAGAATATTTCAGCTGATGTAGTTGCAAAT CTAGTCGCGACGTGCGGTTGTGAACACCTCTGAAATCTTAAAGTCACAGTAACAATTGCAATTGCTATTCACAATTCAGG ACATGAATCATGACTATTTCAATGAATCTTTGTTTTTACTGTGTTAGTCTGGTTGTTGCCGTTGGTTAGTTTATTAATTT TTGTAATGAAGTCCCTTTATGTTTTTGGAACTTGAAAAGTTGTAAGTGCTAATGTTGTGTGTACTTCATATGTTCATAGA TGGATCGGGCTTCAATACTTGGGGATGCAATTGATTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAA CTGGAGTCAACTCCACCTGGCTCAGCGCTGCCGCCTTCTTCAAGCTTTCACCCTCTGACACCCACTCCTCAAACTCTTCC CTGCCGAGTCAAGGAGGAACTATATCCTGGTGCCTTGCCAAGCCCTAAAAACCAGCCTGTGAAGGTAATGTTTGTTCACC TCAATGCAAAGTTGTTGCTAGACAGTTGTAGCTTGTTGCTCGCAGACTGTAAAATTGTGAATTTCTGTCACAATTGATAC TGCCTTCATGTGGAGCTTTCACCCTGGTGAACAAGTGTACATGGATGCAAATTTGGTAGTGATCTTGTGAGCTGAAGTTG AATGAATATTTTCATTTTCTGCATTACTAGCGTCATATAGTGATCTACCTGCCAAAATTGTTGAGTTGCAGAGTCCACAC TATTTACTCATATTCTAGGGTCTGCTACATGTTACTTCCTAGAAACATAGGAAAAATCTTACTGAACATATCCTAGCACT ATACATGATGATTACTTTTGGGGGTCTGGGAAATACCATGATTGTTATGTTTACATAATTTATTTCTGTTCTACTTAGGA AGTTGTTTTAACTTGACTTCAGTGCTTTTGAATTTATCAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTC ATATGTTTTGTACCCGCAGACCAGGTCTTTTGCTTTCTACTATGAAGGCGTTGGACAACCTCGGATTGGATGTTCAGCAG GCTGTTATTAGCTGCTTTAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGGTATTATTCCTTTCTCCGGTCTCAAGCTT CACTTGAACATATCTATTATCAATTTTCCTTATTTTCTTATGATGCTTGCTATTGCAATCCATGTAACTGGCCCTAGAGG TTCTAATATCATTTGTACATAAATTGTTCTTCCAATATTGATGTCTGATGCTTAATCTGGTCAATAGAGGTTCTAATATC ATTTCATGAACCAACTACTCCAAAAGCCATTAGGTGAAGACTGAAGACACATGAATGATTTTTAATTATTATATTTTTAA CCGGGTTAAATCTTTGTAAAGAAATTATCTGAAGAGATTTTTTGAGAAAAGTTTTGGATGAACTTGAATGAAAAGCTGAG TTTGGACCACTCTAATGTTTAGTTAAGTAAGACACAGACATGATACCTTTGTTAGGAACTCTATATCCCACTTTGTCAAA AACAGAATGTGGGCATAAGAGGAGAGGGACCCAATTTTAGCACTGAACTTACTTAGAAGTCCAAAGAGCTCAATAGCTGT TAACAAGTCTTGCGCAAGTTGCTTGTTCTGAAGTGTTTGAAGTTTACTTTTTGGGCTTACTCATTATTGGCTGCATAGTG CACACGATCTGAAGTTTTGGTTTTCATTTATAGTCTTTCTTGTTTCTTTCCAGCAATGCACAGAAGGCCAGGATGTCCTC CCTGAGCAAATCAAAGCAGTGCTTCTTGATTCAGCTGGCTACCCGGGTATGGTGTGATTGAAGTGCTTGATAAATGCTCT ACCCTTATAGCGGCACTAACTGTAGTTGCTGTAGCTTGCTGTTTGTAAATGCATTGCTTCTTGTTGCCCTTTGTAATGGC CTACCCGTCCAGGCCAAGATCAAATAGGTTAGCTAAATCTGTAGGTTGAGGAGTTAGCTCTGATATTTTTCTCAATCTTG ATTATGAAAAAGCAAACTTATGCTGTTAACTTTGTTTTTAAGTTTTGGAATAAATTGTTTTTTTTCTTTCTTCGTTTTGT TTTGGTTTTTCATTGCCAGATCCTCATAAGTTCCTGCCTATTTAGGGCGTGTTTGGATACAGCTTAATTAAGCACTTATT GCTATAAGCGATTATCTATAAGCTAATTTGTGGAGTTTATTAAATAAGCGTTTCTGCATTAACTGGGCAGTTTATGAGAA TAAACAGAAAACTTAAACGTAGATTATAAGCTATATTTATCAACTTACACAAATACTTGCATAGTTTTATGTTATAAGAT AAACTCAAATTAGATCTTTC
CDS sequence (LotjaGi1g1v0632200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTTTCACGCTTCCCCTACCACCAAGACCTCACACCACCACCCTTCAATGGATGGAACAACAACAGCAACAGCA ACAACAACAACAACAACAACTGGTAGAAGCTAAGCATCACAACGAAGACGACATTGCCATTGCCATTGCCATGGCTGGTG GTACCCCTCTTCATTTCTTCAAACCCATGCCAGAATCTGAACCTGACTACTACAACATCAGCTCAGCAATTGCAAACACT AATGGTGTTAACATAAACAACCCCTTTGCTTCAATTTCCAACCCAGCTACCACTGATAGCTTCGTCATGCACCAGACCCT GAACATGGACTCTTTCAATCTTGACCCGTCAAATTCACAAGGTTTTTTCAATAGCAACAGTTTTGAAACTGGATTTGACA GTGGATTCTTCATGGGTGGGAGCAGCAACGCTTCAAACTCCCCTGCTCTGATGGGATTCTCTCAGGGTAATCAGATGGGT ACCCTCGATCTGAGTTCGTGCTCTGAGTTTCCTCCTCCGGGTCTTGAACTTGAAGGGTTTGGTGCTCCGAGGGCTCTTGA GGCGGCGCAGCAGCCGACGCTGTTTCAGAAGCGGAGAGGGTCGGTGGAGATTTCGAGGTTGGAGACGGTGAGGAAGAAGG GGAGGAAGTGGGAAGATGGGGATGTTGAGGCTGATTTTGATGATTCTGGATTGAATTATGAGTCTGATGAGAATGGGAAT GATTTGAACTCAAATGCCACCACTGTCTCTGGTGGAGACCACAAGGGGAAGAAGAAGGGTCTCCCTGCTAAAAATCTCAT GGCGGAGAGGCGCCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTGCCAAAAATTAGCAAGATGG ATCGGGCTTCAATACTTGGGGATGCAATTGATTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAACTG GAGTCAACTCCACCTGGCTCAGCGCTGCCGCCTTCTTCAAGCTTTCACCCTCTGACACCCACTCCTCAAACTCTTCCCTG CCGAGTCAAGGAGGAACTATATCCTGGTGCCTTGCCAAGCCCTAAAAACCAGCCTGTGAAGGTGGAAGTTAGGGTAAGGG AAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCAGACCAGGTCTTTTGCTTTCTACTATGAAGGCGTTGGACAAC CTCGGATTGGATGTTCAGCAGGCTGTTATTAGCTGCTTTAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAC AGAAGGCCAGGATGTCCTCCCTGAGCAAATCAAAGCAGTGCTTCTTGATTCAGCTGGCTACCCGGGTATGGTGTGA
Protein sequence (LotjaGi1g1v0632200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGFTLPLPPRPHTTTLQWMEQQQQQQQQQQQQLVEAKHHNEDDIAIAIAMAGGTPLHFFKPMPESEPDYYNISSAIANT NGVNINNPFASISNPATTDSFVMHQTLNMDSFNLDPSNSQGFFNSNSFETGFDSGFFMGGSSNASNSPALMGFSQGNQMG TLDLSSCSEFPPPGLELEGFGAPRALEAAQQPTLFQKRRGSVEISRLETVRKKGRKWEDGDVEADFDDSGLNYESDENGN DLNSNATTVSGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL ESTPPGSALPPSSSFHPLTPTPQTLPCRVKEELYPGALPSPKNQPVKVEVRVREGRAVNIHMFCTRRPGLLLSTMKALDN LGLDVQQAVISCFNGFALDVFRAEQCTEGQDVLPEQIKAVLLDSAGYPGMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 20 | 40 | 21 | - | – | |
| PANTHER | 67 | 451 | 385 | 1.8E-160 | – | |
| PANTHER | 67 | 451 | 385 | 1.8E-160 | – | |
| MobiDBLite | 227 | 260 | 34 | - | – | |
| MobiDBLite | 235 | 251 | 17 | - | – | |
| Gene3D | 256 | 324 | 69 | 1.8E-14 | ||
| ProSiteProfiles | 260 | 309 | 50 | 15.682 | ||
| SUPERFAMILY | 263 | 330 | 68 | 9.68E-17 | ||
| SMART | 266 | 315 | 50 | 4.2E-14 | ||
| Pfam | 267 | 309 | 43 | 1.8E-9 | ||
| CDD | 267 | 313 | 47 | 1.00511E-13 | ||
| Coils | 303 | 323 | 21 | - | – | |
| CDD | 380 | 421 | 42 | 7.66627E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0632200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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