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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0635800 |
| Transcript ID | LotjaGi1g1v0635800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A1J7I4K7|A0A1J7I4K7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119064630..119069694) extracted from Lotus japonicus Gifu genome v1.2.
TAATGTTGTGTGTTCTTCAATTCAAAACCCATTATAAACCCTGACTCCGAAAAAACCCTGAATCTGAACCCCAAATTGTC TCAAACACCAGTTTTGAGGTTTATCATTACAAGTTCTGCAGATTGGTAAGTCTCTTGTCATGTTTGCAAAACATCATAGT ATTTGCTTCTGAATATCCTTTTGTTTCTGTCTGAAGTTCCATAGATAGATGAAAATGGAGCCTAAACTATTGCTCTCTTC TTCATCATCATGTACCCCTTTGCCATTTTTCATCTCAAATAGACTCCCTTTCCTTCAAAGACCCAAACCTTCTGTCAAAC TCCGTTGTTCTCTCCAGAATTCCCAATTTTGGGGGAGGAATTTGAGCTTGGTTTCATCGCAGAGAAGTGTTTGTAACCCC CCACTTCGAATTGGACCCATAAGAGCAGCAGTGAAGAGGAGGAAGGAGATGCCCTTTGATAACGTGATTCAAAGGGACAA GAAGCTCAAGTTTGTGCTCAGGGTGAGGAAGATTCTGGTGAGTCAGCCGGATCGCGTTATGTCGCTGAAGGAGTTGGGGA AGTATAAAAGGGAACTGGGTTTGGATAGAAAGAGGAGACTTATTGCTCTGTTGAGGAAATTCCCTGCAGTGTTTGAGATT ATGGAAGAAGGGGTTTTTTCCCTCAAGTTCAAGATGACGCCGGAGGCTGATAGGCTTTATCTTGAGGAGTTGAGGGTTAG GAATGAAATGGAGGATTTGGTGGTTGTCAAGCTTAGGAAATTGTTGATGATGTCTTTGGAGAAGAGGATTTTGTTGGAGA AAATTGCCCATCTTGGGGCTGATTTGGGGCTCCCGCAGGATTTTCGCGAAACCATTTGTCATAGTTACCCTCAGTATTTT AAAGTTGTTGCAACTGAAAGAGGCCCTGCTCTGGAATTAACACACTGGGATCCTGAGCTTGCGGTTTCTGCGGCCGAGCT ATCCGCAGAAGAGAATCGGATTAGGGAGCTGGAAGAACAGAATTTAATCATAGACAGGACTCCCAAATTCAATAGAGTAA AGCTTCCTAAGGGTCTTAATCTTTCTAAGGGTGAGATGAGGAGGATAATGCAATTCAGGGACTTGCCTTATATATCTCCA TATGCGGATTTCTCAATGCTGACTTCGGGAACACGGGAGAAAGAGAAGCATGCTTGTGGTGTTGTTCATGAGATTCTGAG TCTCACTCTTGAGAAGAGAACTCTGGTTGATCACTTTACTCATTTTCGAGAGGAGTTCAGATTCTCTCAGCAGCTGAGGG GGATGTTGATTAGGCATCCTGATATGTTTTATGTGTCGCTGAAAGGAGATAGGGATTCTGTGTTTCTGAGGGAAGGTTAT CGAAACTCTCAGTTGATGGAGAAAGACCGGTTGTTGCTTATAAAGGAAAAGCTCCGTTCTCTGGTTAATGTTCCACGATT TCCCAAGGGACCTGCTCGAAGAAGAGTTGGAGATGGCTTGGAAGAGGGTGATAGCAGAGAAGATGATAGTGGTGAAGAGG AAGACTGGTCAGATGTTGATAATGCTATGAGCGGCAATGAATTTGAAGACAACGACGAAGATGATGATGATGATGATGAT TGGAGTGACGAAGATGATGATGATACACCGCCTGATTTTGATGAGGATGCTGGAACATTGGAGATCAGTCAAAGAAAGAC AATTAATCAAGTTGAAGACTCAGAACCGAATAATGAAAAGGTCCTTGTTCCTACACTCCCGGATGGCCGTCCCAGAGAAC AGTGGTAATCTTCACAAGAGCCTTCAAGGTTGGAGTTTTTCACGCAAGAAATGCTTGGCTTCAAATTTGATTTTGGACTC GCTGATTTGTGATGGAAGCTTTACACAATGAGTTTGCATTCACTACCTTAGAAGAATATGCATTATCTTGCTAAAATGAG CATTCTTCATGGACCATCCATGGTTCCTGAATTTGCTATGTCAACAACAAAGAAATGGATATCACATCCAAACCATAACA GATTGTCCAACTGATGTAGATGACTATATCTTTTACCTTTTTGCTGTATAATACAGTAGTGATGCTTGAATTAGTATTAT CCTTGAAACTTATGTTTGCAGGGCAAATTGGAATGGATGAATGTGTGTAAAGGTTCAATTAAATGACATTTGTTGCAGCA TAAATTCTCTATATTGATTTTTTTTTTATCGTTAGAATGTAACTAGTGAACTTCATGCTACACAATTTTGCATGCATAGT GAAATAAGTATGACTGCAAGTTTAGTGTAAAGTAATTCTATATATTGCATAATTGAAATATGAAAATATAAAGTAAATTC ATATATATACTATAACAAGTAAGCTTGACTATGATGTATTTGTTTTTACTTCATTAGAGGATATGTACATAAAAAATGAT TGCTTAGAAGAAGCTCAAATGGTGTTTCATAATCTAGAAAGCAAAAACATTTGTGCTTGAAATTCATTGATATCAGGGTA TTATATTGAGGGCCTATTTCATGATGCTGTAGCACTACTGGATGAAGAACAATGGGATAAACCTGATTTGATGACATGGA ACGGCCTGGTTTCAGGTAATTCAATGAGGGGCTAAAAGCCTAAAATGAGGAAGCTATGGCTGTAGTATATCAGATCAGGA TTTTGAAATTAACTCCCAATGTGGCTTCATGCAGCGATATGATATCAGCTTGTCCTCACAATGAGAACGTCCCACAGTAT TTTCAGCCAACTGCAAGCAGAAAATGTAAAACACAACTCTACTACCATTTTCAGCTTGATATCATGTATGTGCAATTTGG TTAACTGTGATTAACCAAACCCCTGTTTCTGAAAATTTCAAAATATTAGAATCATAAGATCCCTCTTGCTTTCTTTGCAT TGAACCCTAGCCCACCCTTCCATCTATTAAATGAATCTACTTCTTGTTTGATTAAATCAATCTGATTGGAATTGGTTAAC TAAAAAAGGGACTTGGTTATGTGGTGTTTAGTTTTCTGGGTGTGTTGCATAGCTGTAAAACCAAAAAAATTGAAAGGCCC AATCATACTAGCTTTGTGAGTGTTTGTTATAGTTTACATGTTGGTTTCTGGAGCTACACATTGAATTATTGAGTACAGTT ATATACTTAGAGTTCTGCTTAACAAGGGTTCAACTTGTTTGATTCATTCTAATGGGAGGGAATTGAGTGCCACCTGATTG AAGAAATGAACCATTATAATTTTTGTGGCTGTGGTTAATTATGACACTAGTATATGACTTGGTTCCATCTTTAGTTGACA GAGGTTGCATCTTCGTCATCATCCATCCATCAGGTTTGTGAGCCCCATTCATGTTCTTCCATTTTCATTGCTAGGCTGGG TCATCTATGGCATGTTGTTGAATTTGTGCTTCGCTTTTTAGATCTCTAATCTGGCATTTTGCTACTTATGTTGTGATCTT CCTTCTCTTTTTGTTGCTCTTGCTTGGAATTTCATCACAGAAGCTTGAATTGATGATAAAGATTTTATTAGGTTGTAATG GTTTTGGATCTTACTGATTTCTTATTACTACCGTGATTTGTTAAGCACAATTGTATGTTTACCCTATCTCGTAGAAATTG AGGTGTCAAACTGTAAATTGCTGATTTTTCTTTATATGAAACATTTTGATACATCAGGAGCAGCAACTTTTGATCTACTT GGTACGCCATGCTATTATGCGTTTGTTGCTTGATTATTACATGATGCCTTTTCACTCATTCTGCTAGTTTATATGTCATA ACAGACCTGTAGTAAAAAGGTCTTTTACGATGGGGGTGAGAGGGTCAGGGTATGACAGGTCCCAAACTGAAAGTGAAGTC AGTTAGTGTTTGTTGGTGAGTTGTTAGAGTTAGTTAGGGTCTGTTGCTATTTGGACCACAACAGTAACAGGTTGAGGGTT CTTTTGGCAGAATTTTACTGGTTGTTAGGAGAGTCCATACCTCTTGAATTGTTCTGGAGCAATTGGATCAATCTTAGTTA TGTACCTTCTCTAGGTCAGCTTTCTTCATCAATAAACTCAATCCTTTTCGTTCTAATTCAGTACCAGTTGTAACAATATA GAAGCAAAGAGATATAAGAGGGAGTGCTTAAAATCTTGAGTTAATTGTTAAGCTATTAAAATCTTATTGAACTTAACTTA CTGGAGTTAGAGAAGGAGAAGGATGGGGGCCAATCTCTAGATGCCTAGTTGAAACTGCTGAAGAAATTTAGGAACATTGT GCTTTGTTTCCTATTTGTCTTTCTAATTCATAAATATATGGTTTCATAGAACCAAGACAAATTCCTTTTGTTATATCTCA ACAATAGGCTTGCTTGAGGCTGTTATCTTCTAGGAGCCCGGAAGAATTTAAATTCCAAGTTATGGTCTGCTGGTGCAGGC CGGCTTGTGTCGTTGTCATAGGTGCGGAGCCTTATGTAGCACTTCATCAGGTACGCCTCAAGCAGGTAAATACCGAATCT CATGATTTCAAATTTTCCAGAGCTATTTCTAAACTTGCTTTATTTTCTCCAATTTATGAGTAGTAACTAAGGCTGTTGAC AAGGGTACAGAAGAGAACAAGTTGTTAGTCTTATAAGTTTCGGTGTATTCATTCTGGCAAGATTCTAGTTTATATTTATT TGCTAAAGCATGTTTCTATTTTCTCTAAATCTGAATAGGAGGCAACTTCCTCCAGAAGAACAGCAACCTAGCAGATTCCG AAGTTTGAAACATCACACTACCTGTGAGGGTTCATGGCTTGTTGACCACATATTGCATTCTTCCTCAGTTGCGCATTACA ACTTCAAATTGTTATTATAGGCAAACAACGAGACTAGTGAGATATGTTGAAATGAGTCCCCAACCACTAAATTCTGTAAG CTTTGGATGTCTCGGTTCTCGAGTGATCGTTATGGCACATTTAACTTTCAATTTTATTTGTGATAAACATGTTCTTTTCA GTTTAAATTTCTATGTTAGGAAAAAGAAGCCTTTCCTATATCTGAGTCTGGGCTCAAGCACAGTAAACATCTTAGTGATA TTTTCAGATTTTCTATAAAACTTTG
CDS sequence (LotjaGi1g1v0635800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATGGAGCCTAAACTATTGCTCTCTTCTTCATCATCATGTACCCCTTTGCCATTTTTCATCTCAAATAGACTCCC TTTCCTTCAAAGACCCAAACCTTCTGTCAAACTCCGTTGTTCTCTCCAGAATTCCCAATTTTGGGGGAGGAATTTGAGCT TGGTTTCATCGCAGAGAAGTGTTTGTAACCCCCCACTTCGAATTGGACCCATAAGAGCAGCAGTGAAGAGGAGGAAGGAG ATGCCCTTTGATAACGTGATTCAAAGGGACAAGAAGCTCAAGTTTGTGCTCAGGGTGAGGAAGATTCTGGTGAGTCAGCC GGATCGCGTTATGTCGCTGAAGGAGTTGGGGAAGTATAAAAGGGAACTGGGTTTGGATAGAAAGAGGAGACTTATTGCTC TGTTGAGGAAATTCCCTGCAGTGTTTGAGATTATGGAAGAAGGGGTTTTTTCCCTCAAGTTCAAGATGACGCCGGAGGCT GATAGGCTTTATCTTGAGGAGTTGAGGGTTAGGAATGAAATGGAGGATTTGGTGGTTGTCAAGCTTAGGAAATTGTTGAT GATGTCTTTGGAGAAGAGGATTTTGTTGGAGAAAATTGCCCATCTTGGGGCTGATTTGGGGCTCCCGCAGGATTTTCGCG AAACCATTTGTCATAGTTACCCTCAGTATTTTAAAGTTGTTGCAACTGAAAGAGGCCCTGCTCTGGAATTAACACACTGG GATCCTGAGCTTGCGGTTTCTGCGGCCGAGCTATCCGCAGAAGAGAATCGGATTAGGGAGCTGGAAGAACAGAATTTAAT CATAGACAGGACTCCCAAATTCAATAGAGTAAAGCTTCCTAAGGGTCTTAATCTTTCTAAGGGTGAGATGAGGAGGATAA TGCAATTCAGGGACTTGCCTTATATATCTCCATATGCGGATTTCTCAATGCTGACTTCGGGAACACGGGAGAAAGAGAAG CATGCTTGTGGTGTTGTTCATGAGATTCTGAGTCTCACTCTTGAGAAGAGAACTCTGGTTGATCACTTTACTCATTTTCG AGAGGAGTTCAGATTCTCTCAGCAGCTGAGGGGGATGTTGATTAGGCATCCTGATATGTTTTATGTGTCGCTGAAAGGAG ATAGGGATTCTGTGTTTCTGAGGGAAGGTTATCGAAACTCTCAGTTGATGGAGAAAGACCGGTTGTTGCTTATAAAGGAA AAGCTCCGTTCTCTGGTTAATGTTCCACGATTTCCCAAGGGACCTGCTCGAAGAAGAGTTGGAGATGGCTTGGAAGAGGG TGATAGCAGAGAAGATGATAGTGGTGAAGAGGAAGACTGGTCAGATGTTGATAATGCTATGAGCGGCAATGAATTTGAAG ACAACGACGAAGATGATGATGATGATGATGATTGGAGTGACGAAGATGATGATGATACACCGCCTGATTTTGATGAGGAT GCTGGAACATTGGAGATCAGTCAAAGAAAGACAATTAATCAAGTTGAAGACTCAGAACCGAATAATGAAAAGGTCCTTGT TCCTACACTCCCGGATGGCCGTCCCAGAGAACAGTGGTAA
Protein sequence (LotjaGi1g1v0635800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMEPKLLLSSSSSCTPLPFFISNRLPFLQRPKPSVKLRCSLQNSQFWGRNLSLVSSQRSVCNPPLRIGPIRAAVKRRKE MPFDNVIQRDKKLKFVLRVRKILVSQPDRVMSLKELGKYKRELGLDRKRRLIALLRKFPAVFEIMEEGVFSLKFKMTPEA DRLYLEELRVRNEMEDLVVVKLRKLLMMSLEKRILLEKIAHLGADLGLPQDFRETICHSYPQYFKVVATERGPALELTHW DPELAVSAAELSAEENRIRELEEQNLIIDRTPKFNRVKLPKGLNLSKGEMRRIMQFRDLPYISPYADFSMLTSGTREKEK HACGVVHEILSLTLEKRTLVDHFTHFREEFRFSQQLRGMLIRHPDMFYVSLKGDRDSVFLREGYRNSQLMEKDRLLLIKE KLRSLVNVPRFPKGPARRRVGDGLEEGDSREDDSGEEEDWSDVDNAMSGNEFEDNDEDDDDDDDWSDEDDDDTPPDFDED AGTLEISQRKTINQVEDSEPNNEKVLVPTLPDGRPREQW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 519 | 496 | - | – | |
| PANTHER | 54 | 492 | 439 | 3.5E-234 | – | |
| PANTHER | 54 | 492 | 439 | 3.5E-234 | ||
| Pfam | 79 | 407 | 329 | 1.6E-107 | ||
| Coils | 244 | 271 | 28 | - | – | |
| MobiDBLite | 412 | 519 | 108 | - | – | |
| MobiDBLite | 427 | 479 | 53 | - | – | |
| MobiDBLite | 486 | 500 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0635800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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