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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0636100 |
| Transcript ID | LotjaGi1g1v0636100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT5G13910.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9M644|LEP_ARATH Ethylene-responsive transcription factor LEP; TrEMBL-Plants: tr|A0A151R452|A0A151R452_CAJCA Ethylene-responsive transcription factor LEP; Found in the gene: LotjaGi1g1v0636100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119121434..119122841) extracted from Lotus japonicus Gifu genome v1.2.
GCAATTACAAGCAAGTTAGGGTGCAAAAAGAAGAATTCACAAACCTTGGTCTCTCTTATTTATACCCAACTCACATGCTG ACACTCCACAACAAAAAAAAACCGAAACCAAAACACAAACAAAGAAGAAACAACAAGAGTCCCATTGTTTTGTTACTACA ATGAGCCCTCCTCATACAACCCCGTCAAAGGGAAAGAAGAAGACGGAAACAACGCCGCAACAATCACAAGAGCAGCAAAC AACCTGGGGAGGAAGGTACCTCGGCGTCCGGAGGAGGCCATGGGGGCGTTACGCCGCGGAGATTCGTGACCCTTCCACAA AGGAAAGGCATTGGCTGGGCACGTTCGACACCGCGGAGGAAGCCGCGCTGGCCTATGATAGGGCAGCGCGGTCCATGCGC GGGTCACGTGCCCGCACCAATTTCGTCTACACGGACACGCCTCCCGGCTCCTCCTTGACGCCAATCCTCTCCCCAGACCA ACAACAACAAGTGGTTGATCACACGTTCCACGACCTCTCCTCATTCTTGACACAAAACAACCATCCTGGTTCAGTTCAAC CCGACCCTGTTCCGGCTCTCGACCCGGTTATGCTTCTCGCCGGAATGCCGTCGGCTGTTTACGGATACGGTGGTTACGGG GAGGGAACAAATTGTGTAACTGCTGCTGCCACGGTGGAGGGTAATTATAACTCTAACAACAACAACTCTAATCATTATTT TATGAACCAACAACAAGTGTTTTTCGACGACGGTTGTAACGCCGCCGCCGGCAGCACTAGCGGTGAGATAGAGCTTCCGC CGTTGCCACCGGATATTACTAGCTCATGTTATGATAGTAGTAATAATGATAATGGGTGTTATTATTGGGAGCAGAATGCG GGGGGTTATGATCAGTATTTGCATAATGTGGCGGTTTCAGAGAATGTTGTGGCGGGTTCTGAAGGTTTTCAGTTTGGAGG CTCTTCTTCTTCTTCTTCTTCTTCATTTTTCTTCTGATGAGGCTCTTTCTCTTTCTATGTTGTTTTATGTTAATAGTTTA GTTGCTTTTTGGGTTTTTTTTTTTTGTGTGTGAGAGTTGTTGTTGTTGTTGGATTGGTTGTTTTGGGAGACAGGGGCAAA TTTTTTTTTGTTTCATGTGTTGTCCACGTTCGACGACGACCGTGAATGAGGAGAAATGTCTTGAGAGTTTGTCTGGTGTG TGTTGTAATGTGTAGAGTGTTTACGATGGGGTTAGTTTTTGTGTTGCGGCTTGCGACTATTTGCTAGCTTTAAGATGGAG ACTTGCGCAGCAATGAGCAATCAAATCGTGAATATGATTATAATTTTGGGTACTTGCTCCTAACTCTTTCTCTTCTTTGA CTACCAAGTCTTCTTTTCCTCTTTTTGGTCACTTTTTCATATTTGCAC
CDS sequence (LotjaGi1g1v0636100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCCTCCTCATACAACCCCGTCAAAGGGAAAGAAGAAGACGGAAACAACGCCGCAACAATCACAAGAGCAGCAAAC AACCTGGGGAGGAAGGTACCTCGGCGTCCGGAGGAGGCCATGGGGGCGTTACGCCGCGGAGATTCGTGACCCTTCCACAA AGGAAAGGCATTGGCTGGGCACGTTCGACACCGCGGAGGAAGCCGCGCTGGCCTATGATAGGGCAGCGCGGTCCATGCGC GGGTCACGTGCCCGCACCAATTTCGTCTACACGGACACGCCTCCCGGCTCCTCCTTGACGCCAATCCTCTCCCCAGACCA ACAACAACAAGTGGTTGATCACACGTTCCACGACCTCTCCTCATTCTTGACACAAAACAACCATCCTGGTTCAGTTCAAC CCGACCCTGTTCCGGCTCTCGACCCGGTTATGCTTCTCGCCGGAATGCCGTCGGCTGTTTACGGATACGGTGGTTACGGG GAGGGAACAAATTGTGTAACTGCTGCTGCCACGGTGGAGGGTAATTATAACTCTAACAACAACAACTCTAATCATTATTT TATGAACCAACAACAAGTGTTTTTCGACGACGGTTGTAACGCCGCCGCCGGCAGCACTAGCGGTGAGATAGAGCTTCCGC CGTTGCCACCGGATATTACTAGCTCATGTTATGATAGTAGTAATAATGATAATGGGTGTTATTATTGGGAGCAGAATGCG GGGGGTTATGATCAGTATTTGCATAATGTGGCGGTTTCAGAGAATGTTGTGGCGGGTTCTGAAGGTTTTCAGTTTGGAGG CTCTTCTTCTTCTTCTTCTTCTTCATTTTTCTTCTGA
Protein sequence (LotjaGi1g1v0636100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPHTTPSKGKKKTETTPQQSQEQQTTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMR GSRARTNFVYTDTPPGSSLTPILSPDQQQQVVDHTFHDLSSFLTQNNHPGSVQPDPVPALDPVMLLAGMPSAVYGYGGYG EGTNCVTAAATVEGNYNSNNNNSNHYFMNQQQVFFDDGCNAAAGSTSGEIELPPLPPDITSSCYDSSNNDNGCYYWEQNA GGYDQYLHNVAVSENVVAGSEGFQFGGSSSSSSSSFFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 7 | 244 | 238 | 2.0E-67 | – | |
| PANTHER | 7 | 244 | 238 | 2.0E-67 | – | |
| MobiDBLite | 13 | 30 | 18 | - | – | |
| Gene3D | 31 | 90 | 60 | 6.1E-29 | ||
| CDD | 32 | 88 | 57 | 3.79928E-32 | ||
| ProSiteProfiles | 32 | 89 | 58 | 21.14 | ||
| SMART | 32 | 95 | 64 | 2.7E-34 | ||
| SUPERFAMILY | 32 | 89 | 58 | 3.86E-21 | ||
| Pfam | 33 | 81 | 49 | 4.8E-12 | ||
| PRINTS | 33 | 44 | 12 | 1.1E-8 | ||
| PRINTS | 55 | 71 | 17 | 1.1E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0636100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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