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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0639500 |
Transcript ID | LotjaGi1g1v0639500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein; TAIR: AT3G04070.1 NAC domain containing protein 47; Swiss-Prot: sp|Q84TD6|NAC47_ARATH NAC transcription factor 47; TrEMBL-Plants: tr|A0A0B2PKC6|A0A0B2PKC6_GLYSO NAC domain-containing protein 29; Found in the gene: LotjaGi1g1v0639500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119599967..119602375) extracted from Lotus japonicus Gifu genome v1.2.
CGACAAATTCCCACAACCATAAAATGCCATCCCTTCTTGCCATCCCAAAAATTTCAATCCTCTCTATTCCCCCCTATTCC ATTGGCCTTTTGTCTTTCTCTCCATCCACCCTCACCAAACTCTCCACATTTTGCTACTAGCTATACCCAACTAAGCACAT GGCAGAGTCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAAGAACTCATCCTTCACTACCTCAGGAAGAAGG TTGCTTCCATACCCTTGCCAGTTTCCATCATTGCTGAGGTTGATATATACAAGTTGGATCCATGGGAATTACCAGGTTAG TAATTGTGCAATTTTGTAACAAATTAAGATATGTATGATAATTGATACCTTGTCAAGTCATGGTAAGTGATGTGTATCCT TTGAATATTGTTTTAAATTGCAGTCACCAACCTCAATTGTAGCCGCAATATGCATTTTTTTTCCACAATTTTGCAATATA ATAGCAAATTTGGTTTCAACCCCACTTATAATATATTACAACCTATTGTGTGATGTGGAATATTAACTTTTTGTTTTGTT GTGGTTTCTTGATCAGGCAAGGCTTTGTTTGGAGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGAAAGTACCCAAA TGGTGCCAGGCCAAACAGGGCTGCAGCTTCAGGGTATTGGAAGGCCACTGGGACAGACAAGACCATAGTGGCTTCACTGC CAGGAGGAGGAAGAGCCCAAGATAGCATTGGTGTGAAGAAGGCTCTTGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTC AAGACCAATTGGATCATGCATGAGTATCGCCTTGTTGACCACAACAAGCCCATTAAGCTCAAAGACACATCCATGAGGGT GAGTCCCATCCCAACTCCAAAGTCCAAACACACTTTGTTAGCTTATTTTTTCTCAAAATCAATTCAAGAATTTGTTTGTT GATTTTTTTTTCAAGATTGATTTTGACTTTAGAATCTATTGTGATCGTGCAGTTAGACGATTGGGTGCTGTGCCGCATTT ACAAGAAGTCTAAATGTGCTCTATCACCAACAGAGGCAGGAACTGGTGTAGGTGAGGTGGATCAAGCAGAAGAGCAACTA CTCAACGACACTGTTTTCCCAAACACACTGATTTCTCAGAAATCTGTGTCCTTCTCCAATCTGTTGGATGCAATGGACTA CTCCATGCTGAGCAGTTTCTTATCAGAGAATCATTACAACCAAACAGGGACTGGATCAAGTGCGGGTTTCAACAATTTGG ATCAGCAATCCTCCACAATCAACACCACCAATGGGTACATGTTTCAGATGAAGAACACCCAATTGAACCATTCAGCTTCC AACACTGAAAACACCAGGCCAAAGCGTGAGCTTTCAAACATTGATGAGGAAACGGTTTATCCATCGAAGAAATACCTGAA TTCTTCTTGCAACTTCACTAACATCAATGCCCAACTTGAGAAGAATCCACAATGGAACCACCTCATGAAGCAGTCTTTGC TGAATCAGCAATTGCTACTTGGTCCTCATCTGCATTTTCAAGGATAGTCCAAACAATCCCAATATGTGTATGGCTGCATA GTAACGACCGCGTTTAGACAGTCACATTCATAACAGTTTTTTACTATTGCTAAGTTGAAAGTAGAAAACATAGTAATTTT CTACTTTGTGACGGTAAAAACTGTTACATAAGTGATTGTCTAAATGTGACATATACTATACAGCACTACCGGGAACATTT TCTTAGCAGTAAAGATCAAAAACCTAAAAAAAAATTGAAGTCTTAAAAAAAGACTTGAAACTAGGAAAAGAAAATATCTA GAACTGGGATTAGGAACCCACAAAGAACACCACCAATTTGATCATAGGTTTGGATTAGTACACAGAAAAAATTGGCTTTA TTTTTATTTATTTATTTACCTTAATTTGTGTTGAAGAATTAAGAAGAGGTTAGGTTGGAAGGAGGAAACTGTTTGGTAGG AAGTGAAAAGAAAGATTCCACCATTCGAAGACTCAATAAACTGCGAACATACAAAAATATCTAAGCTTGGTGACCAATCA GAAACAAATAGTGTACAAAATGTGAATTTGTACTTCTTTGGTTTGGCAGGGTAGCTTTATGATATACTCTTGTAGATAAG GCATTATTGTACTGAATACTGATGATTGTTTCTTGTCATAGTTCTCATTCTTTTTCCTGGAAAGGTTAGCTTGCAATTTT ACTTTCGGATTTGGATTGAAACCTTTTGCTATTTCAGTATTTTCCAATAGTGCACCTTTACATCTTTCTTATCCTGGTGT GATTATTCATTCAGATGCTTTGAACCATGTCATGCATTATGGAAGTCACATTGAACCTATAAATAAATTAAAATACCCGT TAATTAATA
CDS sequence (LotjaGi1g1v0639500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGTCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAAGAACTCATCCTTCACTACCTCAGGAAGAA GGTTGCTTCCATACCCTTGCCAGTTTCCATCATTGCTGAGGTTGATATATACAAGTTGGATCCATGGGAATTACCAGGCA AGGCTTTGTTTGGAGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGAAAGTACCCAAATGGTGCCAGGCCAAACAGG GCTGCAGCTTCAGGGTATTGGAAGGCCACTGGGACAGACAAGACCATAGTGGCTTCACTGCCAGGAGGAGGAAGAGCCCA AGATAGCATTGGTGTGAAGAAGGCTCTTGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAGACCAATTGGATCATGC ATGAGTATCGCCTTGTTGACCACAACAAGCCCATTAAGCTCAAAGACACATCCATGAGGTTAGACGATTGGGTGCTGTGC CGCATTTACAAGAAGTCTAAATGTGCTCTATCACCAACAGAGGCAGGAACTGGTGTAGGTGAGGTGGATCAAGCAGAAGA GCAACTACTCAACGACACTGTTTTCCCAAACACACTGATTTCTCAGAAATCTGTGTCCTTCTCCAATCTGTTGGATGCAA TGGACTACTCCATGCTGAGCAGTTTCTTATCAGAGAATCATTACAACCAAACAGGGACTGGATCAAGTGCGGGTTTCAAC AATTTGGATCAGCAATCCTCCACAATCAACACCACCAATGGGTACATGTTTCAGATGAAGAACACCCAATTGAACCATTC AGCTTCCAACACTGAAAACACCAGGCCAAAGCGTGAGCTTTCAAACATTGATGAGGAAACGGTTTATCCATCGAAGAAAT ACCTGAATTCTTCTTGCAACTTCACTAACATCAATGCCCAACTTGAGAAGAATCCACAATGGAACCACCTCATGAAGCAG TCTTTGCTGAATCAGCAATTGCTACTTGGTCCTCATCTGCATTTTCAAGGATAG
Protein sequence (LotjaGi1g1v0639500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPGKALFGEKEWYFFSPRDRKYPNGARPNR AAASGYWKATGTDKTIVASLPGGGRAQDSIGVKKALVFYKGKPPKGVKTNWIMHEYRLVDHNKPIKLKDTSMRLDDWVLC RIYKKSKCALSPTEAGTGVGEVDQAEEQLLNDTVFPNTLISQKSVSFSNLLDAMDYSMLSSFLSENHYNQTGTGSSAGFN NLDQQSSTINTTNGYMFQMKNTQLNHSASNTENTRPKRELSNIDEETVYPSKKYLNSSCNFTNINAQLEKNPQWNHLMKQ SLLNQQLLLGPHLHFQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 326 | 324 | 7.5E-111 | – | |
PANTHER | 3 | 326 | 324 | 7.5E-111 | – | |
SUPERFAMILY | 3 | 165 | 163 | 9.81E-65 | ||
ProSiteProfiles | 6 | 165 | 160 | 61.871 | ||
Pfam | 7 | 138 | 132 | 5.2E-40 | ||
Gene3D | 15 | 169 | 155 | 6.3E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0639500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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