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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0639600 |
| Transcript ID | LotjaGi1g1v0639600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ricin B lectin domain-containing protein; TAIR: AT2G39050.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q945P1|EULS3_ARATH Ricin B-like lectin EULS3; TrEMBL-Plants: tr|V7CUG7|V7CUG7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0639600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119608956..119612844) extracted from Lotus japonicus Gifu genome v1.2.
GCCCGCACCCTATTATTACTACTTTTTCAAGTAAACATCGATTCTATAAAATAACACAGAGAAATGCAAACTTAGTTTAA CCAGTGAACTCAAACTCAAACCCTCTCGCTTCATCATCAACCATGGAGTTCCCCTTCAACCAAGGCCGTAACAACTCTCA CGCCACCCACACCCACCACCACAACAACCGCAGAGACGACGACGAAGAACAACACCCCAACTACCCTCCTCCACCAGGCA GCACCGGCAGCCCTTACTCCTCCTTCAACAACCCTTACCCACCACCACAACAACAACCACCCTTTTACGGCGAACCTCAC CGTCCACCGCCACAACAACCACCCTTCTACGGCGAGCCTCACCGTCCACCACCATCTCAGCCAGAAACCAACGTGTTCCA CACATCTCACGACGTCACATATGGACACGTGTCCCATCCTCCTCAATCTCATCACCCTGATCACTCACCCAACTATGGTT ACCCTGTACCACCAGCACAACAACCACCCTTTTCAAGTTACTCCGCCCCTCCACCTCCCAACGCTGCCACCGTGCACCAT GTTTCTCACGAGGTTCATCCACCTTCCAACACCAACGTGCTCCATGTTTCTCACGAGACTAATCAGTTTCCAAACTCTGT TCACCATGTCGGCCATCAGGGTCCCACTGCTCTCTCTGGGAAACCCACTTACCGGGTTGTCACCAAGGCAAACCCTGATT ATGCTCTCACTGTTCGTCACGGGCAGGTCATTCTAGCACCGTTCAATCCCAACAATGAGCACCAGGTAATGCGAAAATGT GGTATTTTGTTTCGGGTGAATGGTCAAATTGTTCACTCAAAGGGTTGGATGCTGGTAAGAACTACCAAGTTGTCAGCGCC CAACACTTTCGTGACCAATTTGACCATTCACTTGATCTTTTGAATAATGTTTCTTGTACTTGTAATTGATTTATCTTCTT TTTTAATTTATATTTCTGATTTTTCTTGTTGCAGCTCTGGTACAAGGATGAGAAGTACAGTACCCGGGTGAAGGATGCAG AGCGTTGCCCTGCATTTTCTTTGGTCAACAAGGCCACTGGGGAGGCCATTAAGCATTCCATTGGTGAAAGTCATCCTGTA AAATCTCTGCTTCTGTTTTACTCACATTTGATTAGGCTGCAAAGTGTTACTTTCTTTTTTTAGTTTGAACCTGCAACTCA TAGTGTATGTGTGAGTAAATTGGATGCTTATGATTGTTGTGCTGATTATACAATTAGGATTTAGGATGCAGGAATAACAA ATTGTCAATTCTTAAAGTTGTAATTATTTTAATGATCTTAATGCTTTAATGTGCTTGCAATCTTTTATGTTGATGTCTTA TGTGATTTCATCGTGTTAAAATTTGTGTCTATTTTGTTTCATAAGTATTCACAAGTTTTGATAAGATCTTATGTTTAATG TCTATAAAAAGAGATGTAGACATAAAATTTCACTTAGATCAAATTTAGTGAAATTTCAATATGTGAACTGCCATGATGTC AACTCTTCTGTAGGTGAAACATGATTGGATTGAATGTGCTGCCTTTTATAGGAAGTGGCTGTCAATCTGTAATCTTTAAT GTTTAGTTAGTTACTTTCGGCTTGCATCTTATAAAAAGAATGATGCTGCAAACTTTTCTGTTTCAAATAAAATGTAATGG TGAACTCTACTCTCAATACTTTTTCTCCATTGCTTAATGATGAATTTCTTGAAGCTTTATTGGGATAGTTTGTCTATTGC CTTTCCTCCATAATAAAGAAAAAAGTGAGTTCAACTTTTCAAAATGTTATCAAGTGAAACAGTTAAACAGTATTTCGATC AATTGCTGTTACTGGTCTTTCTTTTGTAAGTCATCTTTAATTATCATTGTAAGCCGTGGGACAACCTTCCCAACCCCTGA ACTTCCTTATACCAAAAATAATGTTTGCCAGTATCTCTTCTTTTCTTTTTATAATTTTACAGTTTGATCTTATAAATGTG CTTTCCATATTATGGATTCTCTAATTTTATGATTCAGATGTATGGTGTGTGTCAGAGTGAAGTTTTCCCTGTAATGTGTT TCATTAGTGGAAACTATTTGATAGGAGAGATCATTTGGTTGGAAGAAAATAACACCCCCTCTCTACCATTCTCTTCCTTT CTCCCTTTTGGTAATTGGTTATTTACATTAGAATTTTCATAATTCTTGTGTAGGTTCGGCTGATACCCTACAAGCCAGAC TATCTCGATGAGTCTATTCTGTGGACTGAAAGCAAGGACCTGGGTGATAGCTACAGATCTGTAAGGATGGTGAATAATAT TCATCTTAATATGGATGCTTATCATGGTGATAAGAATTCTGGAGGTGTGCATGATGGCACTACTATAGTCCTCTGGCAAT GGAACAAAGGTGATAACCAGCGATGGAAGATCATTCCCTACTGTAAGTTATCCATCCAAATCATAATTGAGTTCTTAGTT CTAACTTACTATCTATTATGCTTGTTCCTTTTGAAAGGTTCCTTAAAAAATGATTTAGAATTTAACTATCTAAAGATAAA ATCTTTCTGTGAAATGTTTGCATGTATGCTGTTTTGTTGTCCAGTTTTTAATTGTTGCTGTATGACTGTATATCTTTTAA GTTGTACCATTTGACTGGAGGATTTCTTTTATTTGTTCTGACATCTGTGTTAGCTTTCTAATGAATCAAAATTTCCACAT ATCTATTTGTTTTTTTAATTTTCAAGGAAAGAAAATTGTAATTGATTCTTCATTTTGGTTATGCTAAATGCAGGAGTACA ATTTACGGAACTGAAAATGGCTTTCAAGATGGATTATCTTTAAGTTGAGAAGATTGCTGGCTCTTTTGTTTTAGTGGGTT GTGCTAACAAACATTCATGTCGTTTCTAGAGTGTAAACGAATGGTTTGTAATGCGGCTACTGGTATGGGGCATTCAGCTA TAGATTTTTCAATCGAATGTGTGTTTTCAATAATATACATGTATGTCACTGGTAATTGTGCTGATTGCCATATGATAGTA TGGAATTTATGTGCTTCTTTATATCTTTGACGTGATTTAGTCTGAACCATTACTGCTGTTGTTGTATCCGTCACTAGTAA TTAACTGGCTTGTGGAGAACAATGTAACTAGCATCATGAGCTTTTATATATTATAGTAATGGTGCTGATTGCCATATGAT AGTATGGAATTTATGTGCTTCTTTATATCTTTAATGTGATTTAGTCTGAACCGTTACTTTATTTCTGGGATTTTACTTTC AACAAATTGGACCATCATATTCTGGTGAGATAAAGAAACAAGAAACAAGAAACAAGTGATTGATTCACCCTTATCCTGCT ACATGGTTTTTCTAGGCTTTCCTCTTGTGGCTATTATATCTTTAGCATTCTCTCAAGAGCATGGAACTGAAATAACTTAA ACCTTAAAGAAGTATCTTGACAAAACGAAAGCGGCCGAAACTTGAGTATTGTTCTTATCAGAGTTATAAGACTCTTTTTC TTATCAAGCTAAGGTACCAAGTTTTTCTACAAACCCTAGTCCAAGAAGTGAGTACAGCCTTGCAATTCTTTTATGAACAT CTCCTTTCCATTTCCCCTCTCTTCCATTGTATAATTATGAGCTTTTTCTCTTGGGCTTTTCCAATTCTCTGTGTCATCTC TTCTTGCCTTGCATGTAATCATCATTTTTCCACGTGGATGATTCTTTATCGCGTCTCCTCCATTATGTGCCTCCTCCATT ATGTGCCGCAACATTTTCAAGACTTGTTCCTTTTTATTGTCTATCCTCTGCTGGTACTAATTTCGTGACTCCTTTTCCTT GGAGGGACGGTTTAGGGCCGCATAGGGAGGTTTATTTAAAGGTTTGGGG
CDS sequence (LotjaGi1g1v0639600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCCCCTTCAACCAAGGCCGTAACAACTCTCACGCCACCCACACCCACCACCACAACAACCGCAGAGACGACGA CGAAGAACAACACCCCAACTACCCTCCTCCACCAGGCAGCACCGGCAGCCCTTACTCCTCCTTCAACAACCCTTACCCAC CACCACAACAACAACCACCCTTTTACGGCGAACCTCACCGTCCACCGCCACAACAACCACCCTTCTACGGCGAGCCTCAC CGTCCACCACCATCTCAGCCAGAAACCAACGTGTTCCACACATCTCACGACGTCACATATGGACACGTGTCCCATCCTCC TCAATCTCATCACCCTGATCACTCACCCAACTATGGTTACCCTGTACCACCAGCACAACAACCACCCTTTTCAAGTTACT CCGCCCCTCCACCTCCCAACGCTGCCACCGTGCACCATGTTTCTCACGAGGTTCATCCACCTTCCAACACCAACGTGCTC CATGTTTCTCACGAGACTAATCAGTTTCCAAACTCTGTTCACCATGTCGGCCATCAGGGTCCCACTGCTCTCTCTGGGAA ACCCACTTACCGGGTTGTCACCAAGGCAAACCCTGATTATGCTCTCACTGTTCGTCACGGGCAGGTCATTCTAGCACCGT TCAATCCCAACAATGAGCACCAGCTCTGGTACAAGGATGAGAAGTACAGTACCCGGGTGAAGGATGCAGAGCGTTGCCCT GCATTTTCTTTGGTCAACAAGGCCACTGGGGAGGCCATTAAGCATTCCATTGGTGAAAGTCATCCTGTTCGGCTGATACC CTACAAGCCAGACTATCTCGATGAGTCTATTCTGTGGACTGAAAGCAAGGACCTGGGTGATAGCTACAGATCTGTAAGGA TGGTGAATAATATTCATCTTAATATGGATGCTTATCATGGTGATAAGAATTCTGGAGGTGTGCATGATGGCACTACTATA GTCCTCTGGCAATGGAACAAAGGTGATAACCAGCGATGGAAGATCATTCCCTACTGA
Protein sequence (LotjaGi1g1v0639600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFPFNQGRNNSHATHTHHHNNRRDDDEEQHPNYPPPPGSTGSPYSSFNNPYPPPQQQPPFYGEPHRPPPQQPPFYGEPH RPPPSQPETNVFHTSHDVTYGHVSHPPQSHHPDHSPNYGYPVPPAQQPPFSSYSAPPPPNAATVHHVSHEVHPPSNTNVL HVSHETNQFPNSVHHVGHQGPTALSGKPTYRVVTKANPDYALTVRHGQVILAPFNPNNEHQLWYKDEKYSTRVKDAERCP AFSLVNKATGEAIKHSIGESHPVRLIPYKPDYLDESILWTESKDLGDSYRSVRMVNNIHLNMDAYHGDKNSGGVHDGTTI VLWQWNKGDNQRWKIIPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 154 | 154 | - | – | |
| PANTHER | 12 | 338 | 327 | 1.7E-107 | – | |
| PANTHER | 12 | 338 | 327 | 1.7E-107 | ||
| MobiDBLite | 33 | 86 | 54 | - | – | |
| MobiDBLite | 117 | 136 | 20 | - | – | |
| Gene3D | 186 | 338 | 153 | 8.6E-14 | – | |
| SUPERFAMILY | 187 | 338 | 152 | 7.72E-22 | ||
| CDD | 190 | 335 | 146 | 1.75827E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0639600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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