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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0639700 |
| Transcript ID | LotjaGi1g1v0639700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT5G18270.1 NAC domain containing protein 87; Swiss-Prot: sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100; TrEMBL-Plants: tr|V7CWR8|V7CWR8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0639700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119629282..119632188) extracted from Lotus japonicus Gifu genome v1.2.
GGTAGATATAGCGAAGAAACTACCCGGATAGGACATACGTCATAAACCAACAGAATACACGTATTTACAACACAACAAAA ACAAATTGAAAAAATAAAATAAAAACAAAATAATAACAGAAATTGTAAGCTTCCTTAGCAAGTGCCTTGAACACCACGGA TCTCACAGCGTGTGAGGTATGTCTAGACGCAGCACGCTCCTCTATTTAAACCCACAATCTTCTCATTGCTCCATTTTCTA AAAAACCCATCTTCTCATTCTTCTTCTTCTGTTTTTTTTCATCATCACTAGATCTCTTGAATTTTATTACACTTTTCTCT TCTCTCTCCTCTTATATTCCACCTTGGAAATTTTCTGGAATTTGAGATATATTGTTTGAATAGTTGTTTGCTTCATGGAA GAGCCGATTGTGTTGAACAAAGGTGATGAGCCTCTGGATTTGCCTCCAGGGTTCAGGTTCCACCCAACAGATGAGGAGAT AATAGTTTATTATCTGACTGAGAAGGTGAAGAATAGTAGTTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGT GTGAGCCTTGGGATTTACCAAGTGAGTTATTAATTTAATTTCCTCTCTCTATCATGTTTGTTATGTTCTTTTGATCATTG TTTAGAAGATTGATGTTGTTGTTCTAAATTGTGGAATTGTGATGATGATTGTGCAGAGAAAGCTAAGATGGGGGAGAAAG AGTGGTACTTCTTCTGCCAGAAGGATAGGAAGTACCCAACGGGGATGAGGACGAACCGAGCAACTGAATCCGGGTACTGG AAGGCAACCGGGAAAGATAAGGAGATTTTCAAAGGAAAAGGGAACCTTGTTGGGATGAAGAAGACCCTCGTGTTCTATAG AGGTAGAGCTCCGAAGGGAGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTTACAGCC TCCCTAAGATAGCAAAGGTATGAAGTTAGCTAATCTTCTCTTAATCACAATGGATCGTGCCGGCAAGAGCCGTCTATCAT TTACAATATCTTTTTGTGTATTTTTCTATATGCTTATATTTGACTTTTGAGGATTGAGAGATTGAGACTTAGTAATCATG GAATTTAATTTCTCATCATCAATCCTCCTCTCCCTTTATCACTTTTTAGAAAGTGGCTTTTTTTTTATGGTAGTTTCAAA GTTTCTTTCATGCAGTTCCTTTAATCATTTACATGCTTTTGCTATTATTATTTTATCAATTTTCATAGATTGTTGATCGT TTTTTTCTATTATTGCAGGATGAATGGGTTGTGAGCAGGGTTTTCCACAAGAGCACAGATGTGAAAAAGTCCCCAATCCC TGGCCTATTGAGGATGAACTCAATTGGGGATCAGCATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTT CTTATAACAAGCCTTCAAGCTTTAATGAAGATGACTTCAAAGGAACCAACCCAATCTCATCATCAAGTACTAAATCACCA TCGGACGGCTATTATCTCCCCAGCTTCTCCATCAACAATCACCACCACATGATCAAGCCAGAAGACCAAAGGAACTATGA GATGAACACTATTCCCACCATTAACTACACCTCCAATCTCAGCAACCCAATGGGGAACAACAACAACACATTCTCACACT CCCAATTTCAGAAGAACTTGTTGTTACCTGACTATTATGTGCACCAAAACAGGATCAGTGGTTTTGGAAACAACAACAAC AACCATGACGATCAAGCTTTCCTAAGAGCATTTGCATCCAACAATCACAATGATTACATTTCTGTATTGGAAAAACAGTG CAAGGTGGAGCAATTCTCTTCAAACCACTCTCAAGACACTGGCCTCAGCAACGACAGAAACACCACAGAAACATCCTCAG TTGTTTCAGGGAGAAATAGGGCATCATTGTATGAGGATCTTGATCAAGGTCCCGCATCAGTCGCGCGAGCTTTCTCAGAT TTGGAATGCTTGTGGGACTACTAGTACTACTGAGGAATTGAATTGAAGTCTGAAGAAGAAGAAGCAAATTTGCCAGATCC ATGGTTTTTTAATTTGGGATCATAAGCAGCATCATCAAACATATAGTAATTCGTGTTTAATTTTTTGCTGGTTTTATTCA AACTGAACAGTCTTCTATATATACTGATTTATATTATAAACATAATACATTATTATAGGCATCACACCGGGAAGTTCATG GATAAGAATATATACTGTATAGATTTATAATATCCATGACTTTCTGGTGTTAGTTATTTTTTATTCATAGGTTATATCGA AGAGGAGGACTTGATGAATCATATGTACATCTATATTCTTTTGTTATATTAGTGGGTTTGTTTTTTATTTGGGATTTTTT AGTTCCTTTGTTCTATGTTGAACTCGTCACTTCTGTGTGCAAATCAAAATTTTCTTTGTACTATCAAATCTGTACTTATT ATTCATTTGTTCTTGTAGATATTAATTATATTCTTGCTCACAATTTTAACCTATATTTGGCACTCATTTATATCCCTTCC AGCTGCATACTATATTTTTTTGGCTGTCGAATAAATCTTTGTGACAACCTGGCCAGCCAAGAGTGGGAAGCATTAATTCG CATGAAAATTAGTGCTCTTTTTTTTTTTCAATTGGGGAATTTAGTTTAAAGCTTATTGTATTTACCTAGCTAGTGCCTCC CAAGTACTACATCTCAGCACACCATGTTCTTGATCATGTCAGAAATGTTTTGGGAGCATTAATTTGCGGTGAATTGAAAT CATTATGTGATGAGTAGTACAATTTTGTTTTTTTGGTTAGATTTTCCATCATCGTGAAGTTTAGAAGTTTGTCATTTGTG TAAATATAGCATCTTTGAAAATAAAAG
CDS sequence (LotjaGi1g1v0639700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGCCGATTGTGTTGAACAAAGGTGATGAGCCTCTGGATTTGCCTCCAGGGTTCAGGTTCCACCCAACAGATGA GGAGATAATAGTTTATTATCTGACTGAGAAGGTGAAGAATAGTAGTTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGA ACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCTAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGCCAGAAGGATAGG AAGTACCCAACGGGGATGAGGACGAACCGAGCAACTGAATCCGGGTACTGGAAGGCAACCGGGAAAGATAAGGAGATTTT CAAAGGAAAAGGGAACCTTGTTGGGATGAAGAAGACCCTCGTGTTCTATAGAGGTAGAGCTCCGAAGGGAGAGAAGACCA ATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTTACAGCCTCCCTAAGATAGCAAAGGATGAATGGGTT GTGAGCAGGGTTTTCCACAAGAGCACAGATGTGAAAAAGTCCCCAATCCCTGGCCTATTGAGGATGAACTCAATTGGGGA TCAGCATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTTCTTATAACAAGCCTTCAAGCTTTAATGAAG ATGACTTCAAAGGAACCAACCCAATCTCATCATCAAGTACTAAATCACCATCGGACGGCTATTATCTCCCCAGCTTCTCC ATCAACAATCACCACCACATGATCAAGCCAGAAGACCAAAGGAACTATGAGATGAACACTATTCCCACCATTAACTACAC CTCCAATCTCAGCAACCCAATGGGGAACAACAACAACACATTCTCACACTCCCAATTTCAGAAGAACTTGTTGTTACCTG ACTATTATGTGCACCAAAACAGGATCAGTGGTTTTGGAAACAACAACAACAACCATGACGATCAAGCTTTCCTAAGAGCA TTTGCATCCAACAATCACAATGATTACATTTCTGTATTGGAAAAACAGTGCAAGGTGGAGCAATTCTCTTCAAACCACTC TCAAGACACTGGCCTCAGCAACGACAGAAACACCACAGAAACATCCTCAGTTGTTTCAGGGAGAAATAGGGCATCATTGT ATGAGGATCTTGATCAAGGTCCCGCATCAGTCGCGCGAGCTTTCTCAGATTTGGAATGCTTGTGGGACTACTAG
Protein sequence (LotjaGi1g1v0639700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEPIVLNKGDEPLDLPPGFRFHPTDEEIIVYYLTEKVKNSSFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDR KYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYSLPKIAKDEWV VSRVFHKSTDVKKSPIPGLLRMNSIGDQHDLLDYSSLPPLMDPSYNKPSSFNEDDFKGTNPISSSSTKSPSDGYYLPSFS INNHHHMIKPEDQRNYEMNTIPTINYTSNLSNPMGNNNNTFSHSQFQKNLLLPDYYVHQNRISGFGNNNNNHDDQAFLRA FASNNHNDYISVLEKQCKVEQFSSNHSQDTGLSNDRNTTETSSVVSGRNRASLYEDLDQGPASVARAFSDLECLWDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 397 | 389 | 2.5E-120 | – | |
| PANTHER | 9 | 397 | 389 | 2.5E-120 | – | |
| SUPERFAMILY | 14 | 167 | 154 | 7.06E-62 | ||
| ProSiteProfiles | 16 | 167 | 152 | 58.612 | ||
| Pfam | 17 | 142 | 126 | 2.4E-40 | ||
| Gene3D | 25 | 173 | 149 | 1.3E-59 | ||
| MobiDBLite | 203 | 231 | 29 | - | – | |
| MobiDBLite | 344 | 366 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0639700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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