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LotjaGi1g1v0640700.1

Overview

Field Value
Gene ID LotjaGi1g1v0640700
Transcript ID LotjaGi1g1v0640700.1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7CYD3|V7CYD3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0640700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:119765334..119768564) extracted from Lotus japonicus Gifu genome v1.2.

GGATAGTGATGTTTGCTTTATCACTGTTGGATAAAATTTGAATTGATTTCTTTTGCTTTTTACCCTTTAATCTGCCGACA AAAAAAAACAAGAGCCATAATAAAGGGTGCACTGAGTTCTAGCTTGGAGCACCAATTTTGGCTTTCTTTCCTCTTTCCTC TTGATATTTCCCCTTCTCTTGGTGGGTTCCAAAATTACACAGTCCTAAGTTCCTAACCTTATGACCATGGATGTGTGCCA AAATGTATCAGTTCCCAGTGAGTGCCAGAAGCAAGAGCAACAACAAGCCCTTGCTACTAATTGCTCCATTGATGACCTCT TCTCTGCTCAGAACATGGTCAGTGTTTCACTTTAATGATAGCTAGTAGTTCATCTTTCTTTCTTTGGTACTTTCTAGATA AATTGAACTCCCCTTGGTCTTCCTAGTTGTTTACAAGTTAGTTTTTGTTTTGGGTATCTATATCTCTTACCAAGTTTGTA GCTTTAATGTCATATTTCTTATGCTTAGCTTCTTGGTGTGTTCAAGTGTTTGTGTTCCTCTCTGTCTTTGGTACCTTCTA GTTCTGGATAAATTGAGCTCCTTTGGTCTTCCTAGTTGTTTACAAGTTGGTTTTTGGTTTTGGGTAACTATATCTTTTGC AAAGTTTGTAGCTTTAATGCCATATTGCTTATGCTATGATGCTTCTTGGTGTATTTTAAGTGTTTGTGTTCCTTTCTGTC TTGTTGCTGCCACTAAACTTTGCATTGCAGGAAGTGGATAATGGCTTGGAATGGCTCTCAGAATTTGTTGAAGATTGCTT TTCAACCCCCTCAGGCTGTGTTTTGGTTCCAGCCAGTGTTCAAACTGCAAGCACAAGCTCCAAGTCCAAACCTTTAGGCA CCACTGTGCAGAAACCTTTGGAAAGTGAGTCTCCTTTGCAGAAAAATTCAGTGCCTGGGAAGGCCAGGAGCAAAAGGAAG AGGCTTTCAGCTCCAAGAACCAAAGACCCTTTAAGCATGTGGTCACACCATTTGAACCCACAAAATGAGGCCTTTGGTCC TGACCCTCCTCTGCTCAAACAGGACTATTGGTTGGCAGATAGTGAACTTATTGTCAAGAAGGAAGAGCAAGAGGTGACTA CCAAAGAAGAACAAGAAGTGGTGGTGGTGGTGAAGAAGGAGATTATTGTGAAGGAGGAATTTGAAGATGGTGAGGTTAGC AATAATGGTCAAAACCCAATGCCAAGGAGGTGCACCCATTGCTTGTCTCAGAGGACCCCACAGTGGAGGGCAGGGCCATT GGGGCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCATCCAGAGTATAGGCCAGCCAAGA GTCCCACTTTTGTTAGCTTTTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTCCTCTTTCTTCCATT CCTATTAGTAAGCAGTAGTAGTGTTTGGTTACTATACTTTAATGTAAATCAAACTTCAAAATTTAGGAACAACAAACTAT TTGGAAACAGAGATACTATTAAGGGGAGTGATTAGTTGTAATGATCACAGTCCATGTGATTAGTGGTAATGATCACAGTC CATGTGCTCATTTATATGGCTAATATCCACTTTCCTTTTTAGCATGTCTGTATGAGCTTATCTTTCACCATATTTAATTC TCAAACTCAGAAGCACTCGAAGAAACTTTTCCCCATATTTGATTTTGGCTTCAAAGTGTGTTTGGTACAGAAACCTTAGA ATTAATTTTGATAAAATGAAATCAATTTTGGATTACAATATGGATGTTTGTGAATCATAATTGCAGAATTGATTTGGTTC TGGAACCTTAGAATTAGCTCTTATAGAGGTAAATCAATTTTGAATGACAATATGACTGTTTATGTCATTTTGTAGAATTG ATTCCAGTCCCAGAATCAATTCTGCTTGAAGTTAGTGAAAATAGCTTTTACATTGAACCTAATTAATTCTGAGATTTTAC AATTGAATCTCACAATATTATCCTAAAAACCACTTGTTGTATCAATGTATTTAAACATAAATCATTTTACTTTAAAACTC AAATGTTTACTCTAATCAATTTTGCCAAATCAATTTTATCTGTAGGGAATCAACTGTAAAAGAGCTTCTTCCAATCATGC ATTGCATTTTTCATTTAGCTAATAGCATTTATTCTCATTCAAGAAACAAGTGTGTAAGTAGAGATAAACCTTGGTCTAAC CCCTCACATCTTGCCAATTGGTAGTACTGAGGTATCTTTCCATTTCTATCTTGAGGAGAGGTTAGAAAGTAGAACTCAAA AACAACCAAATAGGTAAATGAGTGTAGATAGATTGTGGAACCACCTAGGGTATGAACGTCCTTATCAAAGGGTAAAGGTG TGGGCTATGCTATGCAATGCACATGACACTGCCTTGACTTTTCCAATTTCCTCTTGTCATATTTACATTTGAATATTTCT TTAAAATAATTAAAAACTACAAGAATTTTGTTCCACTTGGTATCATATGCTGTCAGCATAACCATGTGGGACTGCTCTTT ATTTATACTTGGCAGTTGGCATGCACTACCACAGAGAAGATAAGATAATGCATCACGGTATGCATATGCACGTGACCTTC AATTCTCAAGACTTTTAATTCAGAGGATAAACTAAACAAAATGGAAGAAGATCAAGAAGAAGAAAAAAACTTCAAATTTG AATATTGTATTCTTGTTTATTTGTTTGATTTGATTCTAAGTAAAAGGGGGTTATGTGTTGGAAACAGATTTTAATTTTGA AGAGATTCTGGTAATTTTGTTTTGTTCTTCACCATTAAATTCAACCCACACTTCTGATAAGAACCACCCAGCTGGAAATT CAGACCATATGACAACTATAAATAATAATGAGGTAACCTGATTAATTTTTCAACATTGTTTGTAACGTCAGGCCATTAGT CATTAAATTGACTTTAGACTTATTAGTTATCACAGTATTTTTAGTTGACTAGGGCTATCCTTTTTTACTTGTCAATTTGC TATTTCATTTTTAGGTCTCGTCCTCCTCGTATGATACGTTGTATTAGACTTAATAGTATAATATATTATGAATTTATTTA TTGTTTGGTGCTAACATGGTATTGTATAGACATATCTATCAATTTACTTTTATATATTAAAATGATGGATTATTTCATTC AACATATAGAGGTGAGATAAGGTCTCATAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0640700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCATGGATGTGTGCCAAAATGTATCAGTTCCCAGTGAGTGCCAGAAGCAAGAGCAACAACAAGCCCTTGCTACTAA TTGCTCCATTGATGACCTCTTCTCTGCTCAGAACATGGAAGTGGATAATGGCTTGGAATGGCTCTCAGAATTTGTTGAAG ATTGCTTTTCAACCCCCTCAGGCTGTGTTTTGGTTCCAGCCAGTGTTCAAACTGCAAGCACAAGCTCCAAGTCCAAACCT TTAGGCACCACTGTGCAGAAACCTTTGGAAAGTGAGTCTCCTTTGCAGAAAAATTCAGTGCCTGGGAAGGCCAGGAGCAA AAGGAAGAGGCTTTCAGCTCCAAGAACCAAAGACCCTTTAAGCATGTGGTCACACCATTTGAACCCACAAAATGAGGCCT TTGGTCCTGACCCTCCTCTGCTCAAACAGGACTATTGGTTGGCAGATAGTGAACTTATTGTCAAGAAGGAAGAGCAAGAG GTGACTACCAAAGAAGAACAAGAAGTGGTGGTGGTGGTGAAGAAGGAGATTATTGTGAAGGAGGAATTTGAAGATGGTGA GGTTAGCAATAATGGTCAAAACCCAATGCCAAGGAGGTGCACCCATTGCTTGTCTCAGAGGACCCCACAGTGGAGGGCAG GGCCATTGGGGCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCATCCAGAGTATAGGCCA GCCAAGAGTCCCACTTTTGTTAGCTTTTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTCCTCTTTC TTCCATTCCTATTAGTAAGCAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0640700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTMDVCQNVSVPSECQKQEQQQALATNCSIDDLFSAQNMEVDNGLEWLSEFVEDCFSTPSGCVLVPASVQTASTSSKSKP LGTTVQKPLESESPLQKNSVPGKARSKRKRLSAPRTKDPLSMWSHHLNPQNEAFGPDPPLLKQDYWLADSELIVKKEEQE VTTKEEQEVVVVVKKEIIVKEEFEDGEVSNNGQNPMPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLHPEYRP AKSPTFVSFLHSNSHKKVMEMRMAPLSSIPISKQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45658
28 263 236 1.7E-62 –
PANTHER
PTHR45658:SF37
28 263 236 1.7E-62 –
MobiDBLite
mobidb-lite
73 100 28 - –
MobiDBLite
mobidb-lite
73 123 51 - –
Coils
Coil
147 167 21 - –
Gene3D
G3DSA:3.30.50.10
189 255 67 3.8E-13
IPR013088
SMART
SM00401
194 244 51 7.9E-15
IPR000679
SUPERFAMILY
SSF57716
195 258 64 1.09E-14 –
ProSiteProfiles
PS50114
198 230 33 11.095
IPR000679
CDD
cd00202
199 246 48 2.83784E-12
IPR000679
ProSitePatterns
PS00344
200 225 26 -
IPR000679
Pfam
PF00320
200 234 35 2.9E-14
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0640700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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