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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0641400 |
| Transcript ID | LotjaGi1g1v0641400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1MJ53|I1MJ53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0641400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119883842..119892150) extracted from Lotus japonicus Gifu genome v1.2.
CCTTCCTCTGCTTTGCTTCTCTGATTTTTCTCCTGTTTCAAAGTCCCCTACCCAATTTCACGGTCTGATTCCACTCTACC CAATTTCTCAAAGATCCAGGTTCGTCTCCCTCTCTCTTTCTAGTTCTACTGCTTTTCCAAAAAAATTAACAATCTTCACC TCTTTCTCCTCATACACTACTTTTCAATTTTCAGATTCCGATTAATGTTTTGGTCCTTGTATCACGTTTTTCTTATTTCA AAATCTATTTTTAGAACAGAGTTATCAAACAGATTTTTTCATCGTTTTTTTCTCAAAAGTAGTTTTTTAAATTTGATTTG TAAAACACTTTTCAAAAACAAAAAAAACAAAAACACAATCAAACGGGCCCTTAGTCTTTTTTCCAACTAAACCCTATATT TGATTATAAAAAAAAAAACTAAACCCTATTTTTTTTTGCCTATATACCTTCTTCTTCTTCATACCTCATCACTTGTTTGT TAAACCCTCACTGTCTCATCGTTTCTTCTTCCCGCCGCCGCAGCAACAGCCCCCACCAACCGTTACTCCATGGCTTCCGA AACCGTGATAAGCCCTGAGACAGTATCGAAAGCCGTCACCTCCCTCCTCAAATGGCGAAAATCCCAATCGGAGACGCAAA AACCCAACCTCTTAGGCCCAGACGAGGAGTTCGTGTACCTCGTTCTCACCCTGAAGAAGGTCCCTCAAAAGGGTCGCGTG AACCCTCACAAGCTTCCCCTCCCTCACTCCCTCCACTCCGATTTCTCCCAGCACTGCCTCATCCTCGACGACCGCGCCAA CAAGGGCCGTGTCACCAAGGCGGACGCGCAGGCCAAGATCAAGGCCGAGTCCATCCCCATTGCCAAGGTCCTCAAGCTCT CCAAGCTCGCTTCTGATTACCGCCCCTTTGAGGCCAAGCGGAAGCTCTGTGACTCCTATGATCTGTTTTTCACCGACAAG GCGGTCGTTCCGTTGCTCGCCCGCCTTCTCGGGAAGCAGTTTTTCAAGAAGCGTAAGGTGCCTGTGCCGCTGGATTTGAC TAAGAAGAACTGGAAGGAGCAGGTGGAGAAGGCGTGCTCGTCGGCGATGATGTTTTTGAGGACCGGGACGTGTAGTGTGG TGAGGGTTGCGAAGGTGAGCATGGAGAAGGATGAGATTGTGGAGAATGTGGTTGCGGCGGTTCGTGCTGCAGTTGAGCTT GTTCCGAAGAAGTGGGGGAATGTGAGGTCGTTGCATGTTAAGATGTTGGATTCTCTGTCTTTGCCGATTTATCTGGCTGT TCCTGATGTGAGGTTGAAGATTGATGGAGGGAAAGCTGAGGCGGAAGCGAAGGAGAAGGATAGTGTGAAGGAGAAGAAGA AGAGTGGTGAGGATGGGGATAGGGAAGTGGGGAAGAAGAATAAGAAGGGGAGGATTCATCAAGTTAAGTACATGGATGTG GATGCGGCGTCAGGGAGCAAGGATGAGGATGGTGACAATGCTGTGACCGAAGATGATGCTGAAAGGAGTGATGGAGGAGT GGAAAAATTGGGGAGTAAGAAGAGGAAGAAAGGAAGCAAAGTGGGGAAAGAGTCTGCTAAGTTGACTAGTGTGAAAACAT TGGGGGAACCTGAAACTCCTAAGGAAGGGGTCAAGAGGAGGAAAAATAAAGATGGGTCGTCTACCAAAGTGACAAAGAAA GGTTTGATCAAGAAGGGTGGAGATAAATTGCATGCTAAAAAGGAGGGGTCCAGTGAGAAGAAGAAGAAGTTGAAAGGAGC TGATGCGAAGGTTAAGGCGAAGAAAATTAAGAAGGCGGCGGCATGAGTTAACTGTTGATTGCAGGGAATTTTTGCTTTTA GAATTTACTGCTTGATGTAGCTCTGTGCAATACTGTGAACTTTTGCTTTTTGAGTTCTCTGGCAGATTTTGTTTTTGAGC ATTTTATTATGCCTTTGTTTTGGTGATAATTTAATTTACTATATTTGAGCTTTAGAATGGTTCTCTCACTCTACAGGTAC AATCAAAATATTGTTTCTCATCTCAGATTGATCTGAAGTTATTTAGATATTATATGCTTATCAGAAATGATTCAAGAAAT TGTGAGATCAAAGTTGGTGCTTTACTTTAAGCAAGAAACTTATCAATAAATAATAGGAGATTTGCATAGCATGTTCAGTT TCAGTTTTCCATTTCTTGACTGCTAAGTTTAATGGAAAATCCATTCTGCTGTACGCACCAATTGTCAAATGTTTCAGGTT TTGATTTTTCAGTGCAATAGGAGTAGAAAGGTTTATGGGATTAAAGTCAATTTTGTTTTCCAATTTGTAGTATCATTATT TAATTAGTGTTAGGAGTAGAAAGGCTTACAGGTAGTATTTTAACCAGTAGTATTATGGTGACATAGCTATCTGAGGCTGG CTGGATTCGGGTCTATGTTTTAAGCAGTTCCATGTGTTGGGGATTGACATTGTCTGCTCATTGTTAGTTGTGATGGGCAC ACAATACTTTGATGGGTGGGAGAATGCACCGTCAGATTGCCCTGTTACTGATCTTCTGCAGATTATGGGTTGTGCCATTG CCAGCGACCTTTGGTGGACAATTCTGGAAAATGTGTAATCTTGTGCCGTGCACCTAGTAAGGAGTACTACAAGAAGTTCT TCTATGACGCATTCCTGGTTGAAAGCCATCTTCATCACTTCTTGCATGCTAACTTGAATAATTGTTGCTGGAATTGTTGA AAACAAGCAAGATGCTGTAGTTTATCTTACATAGACATCTATAACTACTACAAAGGGATAGCATTTTGCTACTATTCATA TAAGGGTTTTTATTCAATGTGGTGGAGGTGCACCATAAGGAACTATTTTTACTCAATGTTTCGCAGGACCACCATAAGGG AGGAACTAATTTGCTTTTATTCTGGTTTTGTGTCAGAAGGTTCAATTTTAAGTTGATTTTTATGTTCCGCTGTTGCAACA AAAGTTAATTTGGAAATTTGTAGTACATATTACTTTTTGGACAACTTTTGTTATGTTTTGTTTTAAGGACAACTTTTGCT ATGTTAAAGTGATTCGAATTGTGTTCTGTGTGATTTTGTGTTGAGTTTTTTGCTATATAAGTGCCTGGTTTCGGTTTTCA ATGCCTAAAACTCATTCACAAAATTGTGCTATCTACTATCTACATTGCTATTTGGTCATTTGGTGTGATTTTGCAAGGTT TTCTCGATGGCTTTCTTGGCTGCTGTTGGCAGTGTTGCATCGCTCTGTCCTCCAAATCACCTTCCTGATTCCCTCTCTGA AGCAAATCTAAGGTGAAGATTGCCAGGTACAGCAGCTTGATCTTCTTCCAGATTTTGCACCCTAGCACACATCATTTATA TTTAGCTCTAGCCTGGGTGTGGCAAGAAAGGCTGGGTCTTTGTGAGTAGCGATTGAAGTCTGGGTGTGGCGACAAGAAAG GCTGGGTCTTTGTAAGGGTCTGTTGGAGAAGTATGTCCCTGAGAGGGTTCTTGATTTTAAGGAAGGGCCAGATGGTTTTG GTGTGTATGCTTCCAAAGATGTAGAAGCTCTTTGCCGGCCAAGGGTGAGTAGCTTCATTTAAGACTTTTGCAATTGATGG CACTATACTTACAATCTACCTGATATAAAGCCTTTGTGACTGCTGGCTGTGGCGCATGAGTAGATAATTGCACACATAGT ACATAGTTAGTTATTTGCATAATGTCCTTTATTAGGAGTTGTTGATGGTTGTTTTTCCTAATGATGTACTTGGACAGGTT ATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAGCTACCGTGGATGTTTTTCCCTGATATAATTCCCAT TGGTCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGGTAATTGAAATTCTCCTCTAAAGCCATTAGTTCATAA TAAGATATAATTGATATGCTTGATTTTCCATATTTTCCATTTTCATTCATTGGAAACTGAATCTTTGATTGTTTCTCTGT CTCACACAGGTGAAGCAGTTCCCACCCAGATGTCATTAGAGATGAAAATGATAGATATTATGATTCCATGATTCGTCGTG TAATTGAAGCATACCGGGTTGGTATTTACCATTCGTTACTATCATTCTTTCACTCCACTCACTGCCATATATATAGCTTA GTAATCAAATTTCCACCTTCATGGTTCATTCTTGTTGACTGCAGATGCTATCCAACTTCAGCCCTTCACAAATAATTGAA AGGTAAGTCCTTTTAATCAATAAAAATCTAAGGTTTATTACATTTTGGTATTGGAATTTGGAAGTGAGTGCATGTTTGGA AATTGGGAGAAGCTTGTGTAGGTAACTTCTGTGTTTCTGAATTGATTCTGAGGAGATAGAAGTTGATTCTTCACATGATT CTAACTCCTTATTGTTTTTGACATTTACTGCATGCTTTCTTTTGCAATGCTGACATTTGGTGCTGCATTTTCAGGGAATG CTTAGATCCCTTTGACACACCAGAGTGTGAAGCTTTTGATCTTTTTGTTAACGAGCTTTTTTGTGTTGGTAAAGGTATCA CAATGCCTCTGAACTTTAGTTTATGGTTTTTTCCCCCTTCCTTCTTGTAGGCATTAGCAGCCAGCACTAACGCTTAGCAT ATTTTCTGCAGCGTGCTCAAATTCCTGTGTGGAAAGAGCCCCTCATTCTTTCACGTATGTCTCTTCAACTGGAACAGCTC GTGCTTCTTCTCAAGGTTGTCTTATCTAAAATTCATTTTCTTGGTTTTTAGCAAGGCATTCATGTAAGGTTAGGCATGTA AATTTTCGGTAGGTTTAAAAAGTCTGGTGCAAATAACATTTTTCATCTCAGTTTTCTTATAAATACTGTTATCTTCACTA AATATTTAAGGTCGCAGGGAGGATTACCAAGTTCAACAGGCTGTTGGACAGTGTCCTAGAAATTGCATTCTTATGTTACC CCCCATCACAAAGAATTCTCTTGGAGGAGCTGTTGGACAGTGTGAGCTGCTTGATAATCCAGGAGGAACTTCTGGAGCTG CAGGATCCTAATCTTGCTTCTACTATGAGAAGTCAGCAACAACGAGCCTTAGAATTCTGGGAGAAAAACTGGGTAAAAAG CAAAGTGTTCTTGTTGAATTTGTTAGTTTTCCATTATGCACATGCCTTATTTTGTGTTACTAACAAATTGTGTTAATCTT GTCAGCATAGTGGTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAGAGGTTCATTTGGGCAGTAGGTATTGCA CAATCACGATGTATTAATATGCAAATGAGAGTTGGCGCGTTAACTCAAAACGCAAACATGCTGGTTCCTTATGCTGGTAA GCTAAATTTACCTTAGATAGTCTGATTAAACATGATAACTTTGTTGTAATATTAATATAATAAAAAATATATTTTACCTT CAATTCTCACCTTAGCTCTACGTTTTACTATCATGTCCTTTACATATTTGAGGTGTTCGTTAATATTAAAACTTGATGAC AAGTACCACAAAATTATGCATGGAATAGATATTTTCTGCTCTACAGAAAGAAAAGTCAAAATCTTTGAGCAGAAGGGCAA AATGTGTGCAAGATGTTACACACCCTTCTCATGGGGGAATTTTTTATGTTACACACCCTTCTCATCGTAGTAGTACTTAT TTTCTCCACTTTAAATGTATAGTTGTTTTTCTAAGTTGACAGATTAACTTAGTCTTACTTTTCAGATATGCTGAACCATT GATTTAAGCCAAATTGTTTTTTTCATTGGCCTTTTAAGGACTGGATGCTTGAAGTTCTTATAAATGCTGGAAGGCAGATT AAAAAGGGAGATGAGGTAAATCATTTGAAAACATAGCTTAAAGAAAAGCAATATTAGCCCAAGAAGGATGTTAAATTTAT TGCATATTTGCTAAAGAAACCCCCTACACAACCCATACAAATAAGAATCTGTGGCTAAAAATTCTCATGTTATACTACAG ATATATTGGTCTAAAACCAGCAAAGAGAGCATAGGTCCGCAAGTCCTCTAAATTTCCGAAACCTCTAAATTGAATGAGGG GGGAAATGGAAAATTGAAGTTGAGAAGGCAAATCCATGTTCCACTTGAATGCTGAACTTCTTATGTCACAACTGCCAATT CATAGCTATTGTATCATTTTATCTTTATATTTGTACATCATATCTTCAATGTTATGCTCTCTTTGAAAGTCACAATGTCT TACTTTTATTTAGATTACTTTGTAGGCTTAATAAAACCTGATGCGAAAATGAAAGTTGGTAGCGACATGTTTTTGGTATC AGTTTCATTGGCTTTGCTAGCTTGATTCATGCTTTCATTAGTTTCATAACTTCTTTTTTATAGGTATATGTGTGTTGTCT TTTGTTTTGTCCTATGAATTGTTGTCTTTTGTTTGGTTGGTTCCTAGAATGGTATTTATGAGCATGCAACTGATATATGT CTTGGCTTTGCTTTCATTTGCAGATTTATATTCTGAAGTTTAATATCCACTTTAAATGCGAAGGCTGTGAGCAGAAAGTA AAGAAACTGCTGCAGAAAATCGATGGTACATACATTGATCATGTCATTTCTTTTGCAATTTGAAGTTTCAAATGGATCTC TTCTGAATTTTCTTTAGACAGTTATTACAGTATCGGCTTATATAGCCACTGGCCACTACTCTCAACTTATCAGGTTCGCT ACTTCACTTTTATCTTTACCTTCAATTTATTTTTTTTTTCTTTTTCAAATTTCATTCAAACACAATTTCTTGTCATTTTG GAACATTGAAATTTTCACTTTTGTTTCCTCTTTTTGATATTCCCTCATTATCCCATCTCATTTCAATTTCATTTGAGGTG TAGACTACTAATATATTTTTGTTCTTTGGTACTTTTCTTTAAGAGCTCATTTCTATTTGTTCTTCGTGTAGTATTGATCT TATGGTTCCAATTCTTAAACACTTGAGAACTGATATGTGTGTTGGGGTCTGTTGTTGGTAAGCAATCTGATTCTTTCTAT GAATAGGTTTTGGTATTTAGCCACGTGTCTATGTAGCTCTTATTTTATCATTGTTTTTTTCTTAAATCATTTTGTTAATA TGTCCTCTTTAGGTTGACTTTGGCTTCTTAGAAATTGAGAACTTGAAAAAGGTAGACCTAGAGGAGAAAGTTAAAGAAAA CTTACAAGCAACATCGTATATCAAGGTAGAACTTGACATTCATATGTTCATGTTAATAATTTTTGTTCTTTCGTGTGGTT CTCTTCTCTCCTTCTATAATGCTGTGATATTTTGCAAACGATATTGAGTCTCTCACCACAACACACTAAGTTGTCTGTTA TCAGTTTTATATTGAGTTTTTGTTTTCTTACACTGTATTTTCCTTTGTCAGGAAACACACAGTTTAACTGTAGATATGTG GGGGACTACACATTTAGGTGGGGCTATCTACATCCTAGAGTGTGCTTTCATTTCATACGAAAAAATTATGCTTCTTTCAT GGAATGGGATTTGAGTGCAGAAGAATTTTGGGTGTTAAATGGTAGGTATGAATAGTAATAGTACTTTTGTTTGTCCTACT TTCAGTAGTTAGTTATTTCTTCTCTTATTATGTTTCACCTCATGACTCCTTAGCATTTTGTAGATATTCACATCATCTCC TTCCAAACTCTGCCTTGGTTTGTTTTGCATCATTTGACTTGGGAGTTGGGTTGTGGTAGTTGATTATTGTTCTTGGTTTT TACACTTTTGTAGCATCATCTATCACCACAATCCACATGAAATAGATATCCCACATAGAAACTTCTAATTTGATTTTGGC GATCGTAATATTTTTATTGAAGCATATAAAGAGAACCCAAATAGAGCAAATTAGCGTTAGACAATCTTCCTTCTATTAAG AAAAATTGTCAACTATTTTATTGGTTGCAGAATCGAACCTACATTGGAAGTTTCTGCTGCTACCCCAATTGCAAGGTCAG AGCATTATGCTGCTAATAATTTTAGCTGCTCTAAGAACAAGTTTGACTTTAAGGTTTGCTATAACCAATGTGTAATAGTT TGTAATTATTACAAACTTAGAGTAGATAATTCATCTTTGAGAAGCTTGCTGGCAAATGGCTATAACCAAAAGGCAATTTC AATTGTGATAGTGGTTTGATAAACTAATGTGTAATAGTTTGTAATTGTTTGTCCTATATAGCATAGAATGATGGGATGTT AATGTAAAACTCATTTACATTAATAGTGCATATTTATTAAACTTATTTTATTAAGTATTAACATAAAAT
CDS sequence (LotjaGi1g1v0641400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGAAACCGTGATAAGCCCTGAGACAGTATCGAAAGCCGTCACCTCCCTCCTCAAATGGCGAAAATCCCAATC GGAGACGCAAAAACCCAACCTCTTAGGCCCAGACGAGGAGTTCGTGTACCTCGTTCTCACCCTGAAGAAGGTCCCTCAAA AGGGTCGCGTGAACCCTCACAAGCTTCCCCTCCCTCACTCCCTCCACTCCGATTTCTCCCAGCACTGCCTCATCCTCGAC GACCGCGCCAACAAGGGCCGTGTCACCAAGGCGGACGCGCAGGCCAAGATCAAGGCCGAGTCCATCCCCATTGCCAAGGT CCTCAAGCTCTCCAAGCTCGCTTCTGATTACCGCCCCTTTGAGGCCAAGCGGAAGCTCTGTGACTCCTATGATCTGTTTT TCACCGACAAGGCGGTCGTTCCGTTGCTCGCCCGCCTTCTCGGGAAGCAGTTTTTCAAGAAGCGTAAGGTGCCTGTGCCG CTGGATTTGACTAAGAAGAACTGGAAGGAGCAGGTGGAGAAGGCGTGCTCGTCGGCGATGATGTTTTTGAGGACCGGGAC GTGTAGTGTGGTGAGGGTTGCGAAGGTGAGCATGGAGAAGGATGAGATTGTGGAGAATGTGGTTGCGGCGGTTCGTGCTG CAGTTGAGCTTGTTCCGAAGAAGTGGGGGAATGTGAGGTCGTTGCATGTTAAGATGTTGGATTCTCTGTCTTTGCCGATT TATCTGGCTGTTCCTGATGTGAGGTTGAAGATTGATGGAGGGAAAGCTGAGGCGGAAGCGAAGGAGAAGGATAGTGTGAA GGAGAAGAAGAAGAGTGGTGAGGATGGGGATAGGGAAGTGGGGAAGAAGAATAAGAAGGGGAGGATTCATCAAGTTAAGT ACATGGATGTGGATGCGGCGTCAGGGAGCAAGGATGAGGATGGTGACAATGCTGTGACCGAAGATGATGCTGAAAGGAGT GATGGAGGAGTGGAAAAATTGGGGAGTAAGAAGAGGAAGAAAGGAAGCAAAGTGGGGAAAGAGTCTGCTAAGTTGACTAG TGTGAAAACATTGGGGGAACCTGAAACTCCTAAGGAAGGGGTCAAGAGGAGGAAAAATAAAGATGGGTCGTCTACCAAAG TGACAAAGAAAGGTTTGATCAAGAAGGGTGGAGATAAATTGCATGCTAAAAAGGAGGGGTCCAGTGAGAAGAAGAAGAAG TTGAAAGGAGCTGATGCGAAGGTTAAGGCGAAGAAAATTAAGAAGGCGGCGGCATGA
Protein sequence (LotjaGi1g1v0641400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASETVISPETVSKAVTSLLKWRKSQSETQKPNLLGPDEEFVYLVLTLKKVPQKGRVNPHKLPLPHSLHSDFSQHCLILD DRANKGRVTKADAQAKIKAESIPIAKVLKLSKLASDYRPFEAKRKLCDSYDLFFTDKAVVPLLARLLGKQFFKKRKVPVP LDLTKKNWKEQVEKACSSAMMFLRTGTCSVVRVAKVSMEKDEIVENVVAAVRAAVELVPKKWGNVRSLHVKMLDSLSLPI YLAVPDVRLKIDGGKAEAEAKEKDSVKEKKKSGEDGDREVGKKNKKGRIHQVKYMDVDAASGSKDEDGDNAVTEDDAERS DGGVEKLGSKKRKKGSKVGKESAKLTSVKTLGEPETPKEGVKRRKNKDGSSTKVTKKGLIKKGGDKLHAKKEGSSEKKKK LKGADAKVKAKKIKKAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 286 | 280 | 4.9E-93 | – | |
| PANTHER | 7 | 286 | 280 | 4.9E-93 | – | |
| CDD | 12 | 240 | 229 | 3.0086E-33 | ||
| SUPERFAMILY | 14 | 241 | 228 | 4.19E-41 | ||
| Pfam | 19 | 235 | 217 | 2.0E-56 | ||
| Gene3D | 86 | 178 | 93 | 1.1E-19 | ||
| MobiDBLite | 256 | 418 | 163 | - | – | |
| MobiDBLite | 256 | 284 | 29 | - | – | |
| MobiDBLite | 315 | 329 | 15 | - | – | |
| MobiDBLite | 355 | 403 | 49 | - | – | |
| MobiDBLite | 404 | 418 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0641400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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