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IPR016095 is a Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain.
<p>Ribosomal protein uL1 is the largest protein from the large ribosomal subunit. The uL1 protein contains two domains: 2-layer α/β domain and a 3-layer α/β domain (interrupts the first domain). This entry represents the 3-layer domain.</p> <p>It has been shown that the 2-layer α/β-sandwich domain is for RNA binding. The 3-layer α/β domain is to stabilise the uL1-rRNA complex [[cite:PUB00048552]]. The 3-layer domain of ribosomal protein TthL1 hinders binding of intact protein with RNA due to interdomain flexibility. As a result, the rate of complex formation with mRNA increases for the isolated domain I as compared with that for intact TthL1 [[cite:PUB00049840]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: 60S ribosomal protein L10a-1-like isoform X1 [Cicer arietinum] gi|502083554|ref|XP_004487494.1| | 13 | ||
– | PREDICTED: ribosomal L1 domain-containing protein 1-like [Glycine max] gi|356555162|ref|XP_003545905.1| | 12 | ||
– | 60S ribosomal protein L10a [Tupaia chinensis] gi|444729141|gb|ELW69568.1| | 2 | ||
– | PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gi|356550103|ref|XP_003543429.1| | 15 | ||
– | PREDICTED: 50S ribosomal protein L1-like [Cicer arietinum] gi|502143820|ref|XP_004505478.1| | 11 | ||
– | PREDICTED: 50S ribosomal protein L1-like [Cicer arietinum] gi|502143820|ref|XP_004505478.1| | 11 | ||
– | PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Glycine max] gi|356531651|ref|XP_003534390.1| | 17 | ||
– | PREDICTED: 60S ribosomal protein L10a-1 [Glycine max] gi|356550103|ref|XP_003543429.1| | 15 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1MJ53|I1MJ53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0641400 | 10 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1MJ53|I1MJ53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0641400 | 10 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1MJ53|I1MJ53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0641400 | 10 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1MJ53|I1MJ53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0641400 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0155300 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0155300 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0155300 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0155300 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|A0A072V9E5|A0A072V9E5_MEDTR Ribosomal protein L1p/L10e family protein; Found in the gene: LotjaGi3g1v0177000 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi3g1v0177000 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|A0A072V9E5|A0A072V9E5_MEDTR Ribosomal protein L1p/L10e family protein; Found in the gene: LotjaGi3g1v0177000 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|A0A072V9E5|A0A072V9E5_MEDTR Ribosomal protein L1p/L10e family protein; Found in the gene: LotjaGi3g1v0177000 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1; TrEMBL-Plants: tr|A0A072V9E5|A0A072V9E5_MEDTR Ribosomal protein L1p/L10e family protein; Found in the gene: LotjaGi3g1v0177000 | 10 | ||
– | 50S ribosomal protein L1; TAIR: AT2G42710.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B3PW56|RL1_RHIE6 50S ribosomal protein L1; TrEMBL-Plants: tr|A0A1J7H5Z5|A0A1J7H5Z5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0252500 | 10 | ||
– | 50S ribosomal protein L1; TAIR: AT3G63490.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic; TrEMBL-Plants: tr|I1L5L1|I1L5L1_SOYBN Ribosomal protein; Found in the gene: LotjaGi3g1v0548100 | 15 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1KU61|I1KU61_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0342900 | 10 | ||
– | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1KU61|I1KU61_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0342900 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 10 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 12 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 14 | ||
– | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T8H5|I3T8H5_LOTJA Ribosomal protein; Found in the gene: LotjaGi6g1v0076800 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd00403 | CDD | 1 | 2.70 |