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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0643700 |
| Transcript ID | LotjaGi1g1v0643700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G19790.1 related to AP2 11; Swiss-Prot: sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11; TrEMBL-Plants: tr|A2Q5W1|A2Q5W1_MEDTR ERF transcription factor; Found in the gene: LotjaGi1g1v0643700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120104236..120107237) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAATCAAAATTCTTCTTTAGAAAATTAAACAATTAGATTTCAAGACAATGTGCATGCAATATCTTAATCCCACTTGC TTAATCAAAAGCTCAGCAACTTTTTCAATTCGTGCATATAAATATGTAACAACCTTCCATTATTATTGTGAGAGCTAAAG CAATTTGTTCTATTCTTTTCTCTTCCTCATAACTTCCCTCACTCAATTACTAAATTTGAACAATTTGTGATGGAGATTCA ATTCCAGCAACCAAATTTGCAGCAACATCAGAAAGCAGGAACCAAAGGAGGAAAATTCAAAGGGAGAAACAGAAACAGCA ACACAAACAAATTTGTTGGAGTGAGACAAAGGCCATCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATA AGAATGTGGCTTGGCACATTTGAGACAGCAGAAGAAGCAGCAAGAGCCTATGATGAAGCTGCATGCCTCCTTCGCGGATC GAACACGCGAACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTCGCTTCGCGGATTCGAAACCTTCTTAACAACA AAAAAGGTAACAAAAAACAGGAAGGTGTTGTTGATGTTGGTGTTGATGTTGATGTTCCTGCCCCAAGTGCTAGCACAACT AGCACTAGTAGTAACACAAGCAATAGTGACAAAAATGATCATAACTCTCTTTCTAGTGGGAAAGTTCAAAACACAATGCT GTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAAGGAGGATTTTCAATCTTGTCCACCTCAATCCAACTTTTCTT GGGGTTTTGGACCGGTTTTTGATCGTTTTCCCATTGCTCAAATTTTGGACATGCCTAAGACTGATGGCATGATTGATGCA GCTAGCTTGGAGCTTTCAGAATTTGAGAGAATGAAAGTTGAGAGACAGATATCAGCTTCACTCTATGCAATTAATGGGGT CCATGAGTACATGGAAACTGTTCAGGATTCCAATGAAACTCTGTGGGATCTTCCACCCTTGTGCTCATTGTTCTGTTAAA CTTGATCTTGAAGGTCTTAAGTTAATGATCCTGCAAATGTTTCTTCCCATAGCATCAGTCTTAGTTTGTACAATTATTGA AAACTTGAGAGGGAGGAGTGTAGGATCAAGGATTGATTGAAATATTACAATAAATATATTGCTTTAATGAGAGATAATTC TGTTTTTACTGCTTTTTAAGTGTGTTTGGATCATCATTGTCACACTTGATTTTGGTAAAAGTGAGTTGAAGTGAGCTGAA AATGAATATATTTATATTTAGAAGCATTTGTGGAAAAGAGTGATTTTGGTAAGCTAATATTATGAAATACAGTTGTAAAA TCTTACAATTGATTATGTTGAATGCAGAAGCTACTCTCTCTAGCTTCTACCAAAAATTCATGTTGGGACTGAAATCATTT CTCTAAGTTGAGTCCCAAACATTGTCAGCCAAAAGTGATTATACTCAGTGAGAATTGATACTGAGGTTAACTCACTGAGA ACCAAACATACACTGAATATCAGTAAGAAGACCCATCACTTGCATTAGCTCCTTGAGGAAGCTCTTTATCAATCATTATG ATGTAAAAACTCGAAGCATTGATGTTCTTTTTCTTGTTCTTGACATCCCAAGTATCAAAAGTAGATCTTCAAATCTCTTT TCTATCAAAAATCTCTTTTCTAGGAATACGCCATTGTGAGAATCTAGACTTCAGAGACAAAACAAGCAAATTGGAATCTT GGACCTTACAGCCAAAATCACAATGACTATTCACTTTGTTTTACATGGATAAACAGTAGAGTTACACATAAATTTCCTTC ATACAAGAGACAAGTACTGTGCTCGTTTGATTAATAATTAATTGAAAAATGCTTCAGAATCTTCTCAGATTTTGGTCCAA TGCTTTTGTACAATTTATGCCTTTTGGTCATCTGGATTGGCCATGATTATATATTCTCAATCAATTATGGCTGCATAAAC TTGTCTCATTCTCATTCCCCAGGCCAGAAATTATAAACTCCAAAATCTTTGATTTATTTGGAGATTAAGTGATAGAACTG AAATTATATTACTCATGAGTCATGACATCCAAAGAAATGGTAACATCCTGCTCACAGTTCAAAGGCATCAATTTCATTTC ACCTGTCATGTGGACCCAGAAGGATCCCTTTCAATATTCTATTTTCTTAATCCTTATCCTCCATTCTCCTCCACTTGGCT CGTGAAGAGACTACAATAAGATATAGCTTTCAAGAAGTGTACTCTAAAACAGCCAACTAGCTTTTTATCAATAGCTTAAG TCTAAAATATGGATATACATTTAAGTGCATGCTTGAATACACGGTTGAACACCGGTGAAGTTAAAATCACAGGTGAATTG TCATAAAAGCTAAGGGAAGTTACTTATGTCCACCTGTCCACCGTAATTTTGGCTCACCATGGTTAATTTTCCACCGCGTA TACAAACATGCATAAGAATGTCTACTGGTATAGGTTGTGATACATTCACATTCACATTCATTTTCTTTTTCATTTCATTT CCATCCATTTTCGCTTCATCTGATCTCTTTTTTTTCTATCACATTAATTGGCCTATATGAATTGCAAGAAGAGACAAATT CCATAGGAAATATAACATGTGATGTGAAAAACTTAAAATAAAAACTCAGGCAGCATAACAGACTAGCAAAGAATAAAAAA TCATACCTAACATGTGGTTGATTCAAGTGGTACATGTTCAATTCCTCTTAAGTAAGATTTTGGATTTGAGTCTTGTGTAT GGAAAAAAAAATACCTGAAAGAGTTAGTTTCATCATAATATGGATGAACCTGCTCGAACATGATTACCTCTCCATGAATG ATACCTGTGTTATGAAAAAACCATTCTTGAAGGCATGCTTATATGGTAAAACCGTATAAGTCAGCACAATATTTATAAAA AGAAAGGAATAAATGAATGTTTATGATATACTTAATTTGTTG
CDS sequence (LotjaGi1g1v0643700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTCAATTCCAGCAACCAAATTTGCAGCAACATCAGAAAGCAGGAACCAAAGGAGGAAAATTCAAAGGGAGAAA CAGAAACAGCAACACAAACAAATTTGTTGGAGTGAGACAAAGGCCATCAGGGAGATGGGTAGCTGAGATCAAAGACACAA CTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCAGAAGAAGCAGCAAGAGCCTATGATGAAGCTGCATGCCTC CTTCGCGGATCGAACACGCGAACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTCGCTTCGCGGATTCGAAACCT TCTTAACAACAAAAAAGGTAACAAAAAACAGGAAGGTGTTGTTGATGTTGGTGTTGATGTTGATGTTCCTGCCCCAAGTG CTAGCACAACTAGCACTAGTAGTAACACAAGCAATAGTGACAAAAATGATCATAACTCTCTTTCTAGTGGGAAAGTTCAA AACACAATGCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAAGGAGGATTTTCAATCTTGTCCACCTCAATC CAACTTTTCTTGGGGTTTTGGACCGGTTTTTGATCGTTTTCCCATTGCTCAAATTTTGGACATGCCTAAGACTGATGGCA TGATTGATGCAGCTAGCTTGGAGCTTTCAGAATTTGAGAGAATGAAAGTTGAGAGACAGATATCAGCTTCACTCTATGCA ATTAATGGGGTCCATGAGTACATGGAAACTGTTCAGGATTCCAATGAAACTCTGTGGGATCTTCCACCCTTGTGCTCATT GTTCTGTTAA
Protein sequence (LotjaGi1g1v0643700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIQFQQPNLQQHQKAGTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACL LRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGNKKQEGVVDVGVDVDVPAPSASTTSTSSNTSNSDKNDHNSLSSGKVQ NTMLFDDAYKPDLSNCKEDFQSCPPQSNFSWGFGPVFDRFPIAQILDMPKTDGMIDAASLELSEFERMKVERQISASLYA INGVHEYMETVQDSNETLWDLPPLCSLFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 257 | 257 | 2.5E-100 | – | |
| PANTHER | 1 | 257 | 257 | 2.5E-100 | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 36 | 36 | - | – | |
| Gene3D | 33 | 93 | 61 | 2.0E-26 | ||
| SUPERFAMILY | 34 | 91 | 58 | 3.14E-19 | ||
| ProSiteProfiles | 34 | 91 | 58 | 19.585 | ||
| Pfam | 34 | 83 | 50 | 7.9E-13 | ||
| SMART | 34 | 97 | 64 | 1.6E-35 | ||
| CDD | 34 | 90 | 57 | 3.71864E-33 | ||
| PRINTS | 35 | 46 | 12 | 9.0E-8 | ||
| PRINTS | 57 | 73 | 17 | 9.0E-8 | ||
| MobiDBLite | 128 | 157 | 30 | - | – | |
| MobiDBLite | 131 | 157 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0643700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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