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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0645400 |
| Transcript ID | LotjaGi1g1v0645400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LEM3 (Ligand-effect modulator 3) family protein; TAIR: AT1G54320.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q9SLK2|ALIS3_ARATH ALA-interacting subunit 3; TrEMBL-Plants: tr|I1N8A7|I1N8A7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0645400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120256516..120261036) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAGGCCAAGCTTTTTGCTTTTTCATCCTCCTAAAATCTCTCACTTTGCATGTCATATTTAAATTTTAATCAGCCTC CTCCTATTTTCTCTCTTCTTTTTAGTAGGCACATTGGGTTTCTTGGCTATGTCTATACAACCTTCATCCACCTCGACCGT TGAGAGAGATGGACAATCCAAGAATTCCAGGAAACCCAAATGTAATTTCATTAATTTTCTCTCCAATCTTGTTCTTTATT TATTCATTTTATTTTTTGTTTCTGTAAATTTCATGTAGAATTTTGTCCCTGCCAAAACAATGAGCCATTTCCATGCTGTT ATAGGGTTTTGGTAATCAACAAGAAAGTTTTACTTTAAACTGGTTCAGGGATGCTTATTATGTTAAGTTTGGATTTTCAA TTTGCAAAAAAATTGGTTCATATAGGTTTCTGGAAAGGATTTGAATCCCCTATGATGTTGTTTGATTGAATCCCATATAA TGAATGATGTTAATAGTTTTCTTTATAGTCTCTCTATGATTCCAGACTCTCTGTGTGTGTCCTCTATAGCATTTATTTGG CAATGTGACTCATGAATTTTTTATTTTTTTCATGTTAGATTCTAGATTCACCCAGCAAGAACTTCCTGCGTGGCAACCGA TTCTAACACCAGGATGGGTATAGCTTCCAACAACATAACTTGTTTAGTTTTACAACAGAAAACTAAACTCTGATTTTCTT ACGCTAACTCTGATTTTATTTTTTGTTTTCCAGGTTATTCTAATATTTACAGTTATAGGAGTCATCTTCATCCCTATTGG TCTTGCTTCATTATTTGCGTCGGAGCGTGTAATAATTTGTTTGCATATATATAGTAGTATCACATGGAATTTGGGAAGTA CTCAAACTGATTATATATTGAATGAGAATTTTTAACGCAGGTGGTGGAAGTTCCGTTCCGGTACGATGATCAATGCCTTC CACCTGCTTATAGAGACGATGCAGTGGCATACATTAAAGATGATAGCTCTAGCAAAACTTGCATAAAGAAATTGACTGTG AGTACAATTCCTTATCATTAATGTTTTGTGATGAAAATATGTGTTCTCCATTTACTCAGCAGTATTTTTTTCTCCTTGTT TGATATGATATGATAGCTTAAGCTGCAATTGTTGAGAAGTAATTTGCTGCAAACTTTGCAGGTTAAGAATAAAATGAAAG CCCCTGTTTATGTCTATTATCAGCTTGACAACTTTTACCAGAACCATCGCCGGTATGTTCAATTAACTAGCAAAATCTTT TTCCCTTTTTTCTATGTATCAGTGAAATTGATTCGGCATTTTCCCCCCTTTTTTAACTTGAAAGGCCTATTGATTAGAGT AACCAAACATGTTTGTTACTTTCTGATTATTTGTAAGAATTAGGAAAGGATGCATGGATAATATGAATCAAAATGTGAAG CTTGATGTATCTGTCCGATAGAAACAGCAGATCTCTATTAAATACTAGTTTCATTATGTTTCTATACATATACCAGTAGT GGTAGTTTTACATTAATATGAAGAAAAAAAAAAGTTGAAGGGCTTTCAAGCAACGCATTAACTTTAAGAAATGCAACTTT GTAGGGCTTTCAAGCATATGTGGGATAAGTATCATAATTTGAGTTTCACAGGGAAAAAAAAAAGCTCCAGACTCTTTGGT TGAGTTCTCTCTCTTCTTTCCTCTCTAGAGCTCACACAACCTCACTTTCCCTCTCCCTCACCAATCTCTGAATCCTGTAA CTAATATCCATTTTTCAATTTCTACAGGCAATGAGTTTTGTCACAGGGTTCTATATTCTTATTTTCACACAAAATCTCTT TGCTCTGTGCCGTTCCCCCCTCCTGCATATTAAAATTAAATCTGACTAGATAATATATTGATTTTATGGTCTTCTATTCA TCTTTTACTTTTCTGGTTGGAGCAATAGGGGGGTATTAGTAAGTTTTAGTTCTAAGATTAGGAACTGCTTCAGTTAACTC ATTTATCTGTGCAATCTCTTTATCCACAGATATGATCCCGCAAATCTTCTGTCGATCCAAGATGCTTCAGATTAGCATAA AATTCTCCTCGTATTATAATCAGCTGTTTCCTTTATATTTCTCTCTTTTATCTGATAAACTCATCGTCACTTGGACTTGT ACAATTCAAATTTTTACGGAGTTCTCAGCTTAATTGAGTGTGTCAATTTTGACGTGAAGTTTTTGGCTCTTTCGGTGTCT TGATCACTTGCAAGTTGTTAGTTACTGCTGATGCAGATCCTTGTTAGTCTTTCGTGCACTCATGTATGAATAGTCAACTT TGTGTCATAATCCTTTTCAAGACAATCTTCAGAATAAACATGGATTTCAGATTCCAAAGTATGATAAAAATGTAGTTTTA TTTTATGTCATTTCAGATTTTGTTCATGGTGAATCTTCATCAAGATTGTTATGTTTTATTTATATTCTCCTTCCATATTC CATTATAGAATTTCAAACATTAATATTTGAAAGACCAAGGACTGTAAGATCACAACTATCAATTCTCACTTCAGCTATAA CTTTACCTGATAGGCTAATCTTTAAGGTTGAGCTCACTTCAAGGTTTGAGTCATAACACTACTTTGATCTCCATTTCAAC CATGTTATGAGGGTTTATAGATACTAAAGGGGAAAGTTCTTTTTCCTCTCTCTTTTGCTTCTACATTCAAAAAGACCACT CATCTGATATCATTTTCCTGAATCTTATGTTTGTATATCTATAGGTCCATTATATCATTGTATCTATGAAAAACTGCAAT GCAGTCCATATTTCAGTTCCGGAAATTATATTTCGTAGATTGGGTTTATCTCATACTGTACAAAAGTTCCCAACATATGA TGGTAGAAAATATAGTAATTCTCTTTGTGAGTTTGCTTCTTGTAGAACCACTTCTTTTTTCCCTCATTTAGTGCTCAATG TTGAAATTCTTTCCCCTACCTAGATTTTGGATGACATTATTCGCAGATACGTTAAAAGTAGAAGTGACACTCAACTGAGG AGCAAGGCAGCTGAGTATGATGTAAGCTCATGTAGTCCCGAAGACTATACACCAAGCAACTTGGGTCATCAACCAATTGT TCCTTGTGGCCTTATTGCATGGAGTCTGTTCAATGACACATACAGGATTTCAAACAATAATAAGGATTTGGTGATCAACA AAAAGAACATAGCATGGAAGAGTGACCAAAAGGCCAAGTTCGGGTCGGATGTTTACCCAAAAAACTTTCAAGCTGGAGGT TTGATTGGGGGTGCTAAACTTAATCAGAGCATACCTGTAAATATATCTATCTACATTGCTGTTTAAAATTTCTATTGATG TTCACTTTTTTTGTGAAAAATCCTCTTATACTCTTTTTGATATTTAGAGAAATTAATCTTTGTTATCATGTGGCATGCAC CAGTTGAGTGAACAAGAGGATCTCATTGTTTGGATGCGAACAGCAGCACTGCCCACTTTCAGAAAACTATATGGGAAGAT TGAGAATGACCTTGAAGTTAATGACGAAATAACAATGGTAATAGAGAACAATTATAATACATACGAGTTTGGAGGAAAAA AGAGCCTGGTTCTCTCAACCACAACCTGGATTGGTGGAAGAAATCACTTCCTGGGAATTGCATACATTTTCATTGGGGGG ATGTCCTTGTTATTTGCTATAGCTTTCCTTCTTATGTATGTGATGAAGCCAAGGTGAGTAATATATTGAACATTCTCCCT TTCTATACTTAATGGCTAGGCTATGCTTAAATACATTGCAAATTGGCATTAACACTCACTTCGAATCTTTATGTCTATAT ATTCTGAACTAATAAGCTGAGATTGCTATACATGCAGGCCTCTTGGGGATCCAACATATCTGTCTTGGAACAGAAATCCA GGAAGTTGGACCAGAATATTTCATCTTATGAATTGATTTAACAATTCACTATTTCCCATTTATGAAGAAAGGGATGTCTC AAGGAGGCTTGTACCTGAGTGATCGAGTTGAAGAACTTCAATGTAACATCTGAGTTTTATACACACATAAATGCTATATA TATTGAATACCACATGCATACATGTTGGGAAAAACTCTTCAAAAGTGACCTCTGTCTCAAATGAAGACTAAAAGTTTTGT TGACAAACTTGAAAAACTCATCCCAAATGGTTTATTATCCTACAAACTCAAGTCCACTACTTTAGAGTTACAAGGAATAA AAGACTCTCACAAGAGACACTTCCACACTTGCAGCTTGCTTACTTTTCTACATCTTGAATATCTCCACTCTTAACAGACT CTCACAATATTGAATTTCAAGAAATAACAATTCACAGGCATTGCGATTTCTCACTCACATCAATTAAAGGTTGTCAAGCC TACAGAAGAATGTTGGTGGAATAAGCTCTAGAGTAATTTTTATACAAAAAAATTGTCGAATTTAATACTACGGAATAGAA TCTCTTAAGTGAACTGATAATGTCAATTGAAGCATTGTGTC
CDS sequence (LotjaGi1g1v0645400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATACAACCTTCATCCACCTCGACCGTTGAGAGAGATGGACAATCCAAGAATTCCAGGAAACCCAAATATTCTAG ATTCACCCAGCAAGAACTTCCTGCGTGGCAACCGATTCTAACACCAGGATGGGTTATTCTAATATTTACAGTTATAGGAG TCATCTTCATCCCTATTGGTCTTGCTTCATTATTTGCGTCGGAGCGTGTGGTGGAAGTTCCGTTCCGGTACGATGATCAA TGCCTTCCACCTGCTTATAGAGACGATGCAGTGGCATACATTAAAGATGATAGCTCTAGCAAAACTTGCATAAAGAAATT GACTGTTAAGAATAAAATGAAAGCCCCTGTTTATGTCTATTATCAGCTTGACAACTTTTACCAGAACCATCGCCGATACG TTAAAAGTAGAAGTGACACTCAACTGAGGAGCAAGGCAGCTGAGTATGATGTAAGCTCATGTAGTCCCGAAGACTATACA CCAAGCAACTTGGGTCATCAACCAATTGTTCCTTGTGGCCTTATTGCATGGAGTCTGTTCAATGACACATACAGGATTTC AAACAATAATAAGGATTTGGTGATCAACAAAAAGAACATAGCATGGAAGAGTGACCAAAAGGCCAAGTTCGGGTCGGATG TTTACCCAAAAAACTTTCAAGCTGGAGGTTTGATTGGGGGTGCTAAACTTAATCAGAGCATACCTTTGAGTGAACAAGAG GATCTCATTGTTTGGATGCGAACAGCAGCACTGCCCACTTTCAGAAAACTATATGGGAAGATTGAGAATGACCTTGAAGT TAATGACGAAATAACAATGGTAATAGAGAACAATTATAATACATACGAGTTTGGAGGAAAAAAGAGCCTGGTTCTCTCAA CCACAACCTGGATTGGTGGAAGAAATCACTTCCTGGGAATTGCATACATTTTCATTGGGGGGATGTCCTTGTTATTTGCT ATAGCTTTCCTTCTTATGTATGTGATGAAGCCAAGGCCTCTTGGGGATCCAACATATCTGTCTTGGAACAGAAATCCAGG AAGTTGGACCAGAATATTTCATCTTATGAATTGA
Protein sequence (LotjaGi1g1v0645400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIQPSSTSTVERDGQSKNSRKPKYSRFTQQELPAWQPILTPGWVILIFTVIGVIFIPIGLASLFASERVVEVPFRYDDQ CLPPAYRDDAVAYIKDDSSSKTCIKKLTVKNKMKAPVYVYYQLDNFYQNHRRYVKSRSDTQLRSKAAEYDVSSCSPEDYT PSNLGHQPIVPCGLIAWSLFNDTYRISNNNKDLVINKKNIAWKSDQKAKFGSDVYPKNFQAGGLIGGAKLNQSIPLSEQE DLIVWMRTAALPTFRKLYGKIENDLEVNDEITMVIENNYNTYEFGGKKSLVLSTTTWIGGRNHFLGIAYIFIGGMSLLFA IAFLLMYVMKPRPLGDPTYLSWNRNPGSWTRIFHLMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PIRSF | 2 | 345 | 344 | 1.7E-136 | ||
| PANTHER | 17 | 348 | 332 | 1.7E-185 | ||
| PANTHER | 17 | 348 | 332 | 1.7E-185 | – | |
| Phobius | 44 | 66 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Pfam | 64 | 332 | 269 | 5.8E-90 | ||
| Phobius | 67 | 306 | 240 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 307 | 329 | 23 | - | – | |
| Phobius | 330 | 357 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0645400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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