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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0649400 |
| Transcript ID | LotjaGi1g1v0649400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wuschel-related homeobox protein; TAIR: AT5G17810.1 WUSCHEL related homeobox 12; Swiss-Prot: sp|Q8GY25|WOX12_ARATH WUSCHEL-related homeobox 12; TrEMBL-Plants: tr|B7FL74|B7FL74_MEDTR Wuschel-related homeobox protein; Found in the gene: LotjaGi1g1v0649400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120750835..120754250) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTACCTAGGTTTCAGTTTCAACATAACATTTGTTATTTCATCTTTGTGCATTGGAATGGAAGATCATCAGGGGCAGA AGGACCCCAACACCAAAAACAACAACGCTCCAAGCCCCCACCATGGCTGCAGCTCCGAGAAGAGTGAACCGGTTAGGTCA AGGTGGACTCCAAAGCCAGAACAAATCCTCATCCTTGAGTCCATCTTCAACAGCGGCATGGTGAACCCACCAAAAGATGA AACCGTCAGAATAAGGAAGCTCCTTGAGAAATTCGGCACCGTCGGTGACGCCAACGTGTTTTACTGGTTCCAGAACCGCC GCTCCCGATCTCGCCGCCGCCAGCGCCAGATGCAAGCCTCCCTTGTTGAGCAGAGAAACAACCTGCAGAACAACAACATG CAGCAGCAGCTTCTTGAAGGTGCACCAGCTGCAGCAAGTGCTATTCCTTGTGATCAAGCTCAGGGTCATCCCAACCTTGC TGCTGCAATTTCCATGGGTTTTGGTTCTTCCTCTTCTCCATCTTATCTTGCTGGTTCCTCTTCATCTTGTGGTGTTGGCC AACAAGGCTTGGATGGTTACTTCTCACTTTCTCCTCAAATGGGTTACCCGGGAATTGATCAAAGTTTTGCTGCATCATCT CTTGTGTATCCTCCTGTTGCTCCTAACTTGAACTACCAATCTGGTAATTAAATTGCATGCCTATTCTACTCACAAAATTT CAATTTTTTAGCATGTTTGAATTAGTTTCTATTCATCAAAATCATTTCCCAGACCAACAAATTACTTATTGAGGTTTTTT CTTCTAATTGATTCCTACCTCATGACTAACTAATTGTAAACCTGTTTCCAAACATGCATTTTGAGAACTAGTTTTATTAA AATCAATTCTGATACTTAATGCATGTTTGAAAACTCTACTACAATTGTTGATTCTCAAATTAGAAGCAATACCGATGAAA AGCTTCCTTGAGTAACTTCTGAATTTCAGAGTCGATTATAGTGAAACAAAAGCCGATCCAAACATGTTAAGAATTAAAGA AAAGCTTACAAACATATATGCATTTTATTGCTTGAACCAAAGTACTATTTTTTTTCCTTCAATTTTTGTTGTTGTTGAGT GTCTTCTTGCATAAATTTCCCATCTAGAGGTTTCATTCATCTTTCCTTCAAGAATAGTAGCCTTCAAGAAAACGAGTAGT AGGATCCAGAAATTGTGATTGAAGCTAGCGTTATTAATTTAACGCGTTTTTGGGAGTTAAAGTTTATTTCTTTTTTCGGG TTATTAGGTTTTTAAGGTCGGCTATGCACAATAAAGTGAGAACCTTTTCCATGATTTGACAGTTCTTCTGTGTTTTGAAT TGCATGAAAGTTGTACTTTCCGGAAAAACATGACTCTACTTTCCGGTTGCAGTTTCTGCTCCTTCCTTTTTACTCATTCT CTCACTTCTCTCTTTTCAGGTTTCTTCCATCAAACAAAAACTTCTGTGCAAAGATTTCCAAACCCTAGTTTATTTTTTTT ACCCTCATTCTCATTTTATTTGTTTGTTTCCCCCTTTTAGTAATTTGGTTACTCCTTCCTTTCTTCCCTGGATATGCATC TATCATGTCAAGTCCATCATACTTACATTTGACCTGTAACCTCTGACTAATGACGTGGTCATCAAAGACAACTTGACATA AGGTGTGAGATCATTTAACAAATTCTGTGTGGTTTAAGCGGTTTAGAGTTTGATTTTTAATGAAAAAAACTTTTTGGTGA ACCTCATACTAATTGGGTAAGAGACTGGTCTTACAGTTATTAATTGTAAAACTAAAAAAAGACATGTTAAATCATTTGTC TTAATGTCTTATTCTTTATTAGGCTAATGAGATTTTATCATGTCAATTAAAAATTAGATGAATATGAAATTTATAATATG TTTTTAATTGACATGACACAATTTTATTGATAGGACAAAAAATGAGATAATTTTATAGACTAAGGATATTGATCGTGGCG GTGATACATGGTTGAATAGATTTATTACAACGTGCGTTACTGCTTGATTTCTTGCATTTTTTAAGTAATTGGCCGGAGCA TTGTTGAGTTTCAAAGCGTTTTGATGGCATCAGCTTTTTATTTCTTGATTATTTTATGATTGGTGTGTTCTAATTTTTTT GTTTTGCTGATTTTGGGGGAAGGATATGAGGGTTCTAATGTTTCAGGATACATCACGGTGTTTATCAATGGGATTGCAAC AGAGCTTCAAGGGGGGCTAATAGACATGAAAACTATGTTTGGGGAAGATGTGATGTTAGTTCATTCCTCTGGAGTTCCTG TTCCCACAAATGAATTTGGGTTCTTGATGCAAAGCTTGCAGCATGGTGAAAGCTACATTCTGGTTGGCACTTAGCATAAC TTCAACTCAATTGCTTCTATTCTAAATCTGCTGCTGTTTTATACGATTGATTAATTCTCAATTCTATGGTTTGAACATGT TAAGAACTTATCTGCTTACTATAAAATTTAAATTTAGCATATATTATTTGCAATATGATTTTTATGCTTAAGGATAATTT GCAAAAATACCCTCTTTTAATTTGTGGAGGAGTCTTTTTATATATCTATAGTAGATAAAGTCTTAATAAACACATGCTAA CTTAATTGATGTGATGACCAATTCTTCTTAGAAGATTGTGTATTTAATGTTCAATTTCCGCTTCTCACATGAGAGTTGTG TTGGTAACAATTTGTAAGTGCTTAACAAATGGTTTTAGAGGCATACTTATGGTGGTGAAGCTGAAATCACCCAAACACTT TCTTGAAAAAAAAAGCCTACAGTCCAACTTTTATTGTTTTTACTTGAATTTTTATTTTTAAACACCAGAAAGTAAGTTCA CAGCATATATTGTCTATTTTTCTCTCTAAGTTTTTTTTTTTATCTTCTTGTTACTCACATATATATCACTTCTATCTTTT CTATTAATTTTTGTTTAGTTAGACTAATTGAGGATTTTTTTCTCTCACGCAAACATCTTTTTCTTTTATGTGAATCCTGA TTCTTAAATTTTGTTTTACAGGTCCCGAAGGCACCACAAGAATGAAACCATCAGCCTATGTAGCAGACGTGGAAGCTTCC TATACGTGTTTCTCTGACTGCTGCTTCTCTCTTTTTTCCTTTTACCAATTTCGTTATTTCATATAATAGAGATCTATCGT GTGATTTTAGTAGCCCATATATCCCTCTATCTACCTTAGCAAAGATATATACTGTATGTTCTTAGTTTGGTTTCAGTACA AACATGTTTTATGAAACTCTAGATATTTGATCAAAACAAGTTGTGTAATGTATTTTACATAGCTCATTCAGTTCTTGGAA ATGCTTCTAAGTATGTTCTCTGACTGAAAAAAAAAACATGATAGAGTAAATTCTTC
CDS sequence (LotjaGi1g1v0649400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATCATCAGGGGCAGAAGGACCCCAACACCAAAAACAACAACGCTCCAAGCCCCCACCATGGCTGCAGCTCCGA GAAGAGTGAACCGGTTAGGTCAAGGTGGACTCCAAAGCCAGAACAAATCCTCATCCTTGAGTCCATCTTCAACAGCGGCA TGGTGAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTCCTTGAGAAATTCGGCACCGTCGGTGACGCCAACGTG TTTTACTGGTTCCAGAACCGCCGCTCCCGATCTCGCCGCCGCCAGCGCCAGATGCAAGCCTCCCTTGTTGAGCAGAGAAA CAACCTGCAGAACAACAACATGCAGCAGCAGCTTCTTGAAGGTGCACCAGCTGCAGCAAGTGCTATTCCTTGTGATCAAG CTCAGGGTCATCCCAACCTTGCTGCTGCAATTTCCATGGGTTTTGGTTCTTCCTCTTCTCCATCTTATCTTGCTGGTTCC TCTTCATCTTGTGGTGTTGGCCAACAAGGCTTGGATGGTTACTTCTCACTTTCTCCTCAAATGGGTTACCCGGGAATTGA TCAAAGTTTTGCTGCATCATCTCTTGTGTATCCTCCTGTTGCTCCTAACTTGAACTACCAATCTGGATATGAGGGTTCTA ATGTTTCAGGATACATCACGGTGTTTATCAATGGGATTGCAACAGAGCTTCAAGGGGGGCTAATAGACATGAAAACTATG TTTGGGGAAGATGTGATGTTAGTTCATTCCTCTGGAGTTCCTGTTCCCACAAATGAATTTGGGTTCTTGATGCAAAGCTT GCAGCATGGTGAAAGCTACATTCTGGTCCCGAAGGCACCACAAGAATGA
Protein sequence (LotjaGi1g1v0649400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANV FYWFQNRRSRSRRRQRQMQASLVEQRNNLQNNNMQQQLLEGAPAAASAIPCDQAQGHPNLAAAISMGFGSSSSPSYLAGS SSSCGVGQQGLDGYFSLSPQMGYPGIDQSFAASSLVYPPVAPNLNYQSGYEGSNVSGYITVFINGIATELQGGLIDMKTM FGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILVPKAPQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 12 | 279 | 268 | 1.5E-105 | – | |
| PANTHER | 12 | 279 | 268 | 1.5E-105 | – | |
| SUPERFAMILY | 28 | 100 | 73 | 2.91E-14 | ||
| ProSiteProfiles | 29 | 94 | 66 | 11.256 | ||
| Gene3D | 31 | 101 | 71 | 2.5E-9 | – | |
| SMART | 31 | 98 | 68 | 8.3E-7 | ||
| Pfam | 33 | 93 | 61 | 1.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0649400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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