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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0653000 |
| Transcript ID | LotjaGi1g1v0653000.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin; TAIR: AT3G43810.2 calmodulin 7; Swiss-Prot: sp|P62200|CALM1_DAUCA Calmodulin-1/11/16; TrEMBL-Plants: tr|A0A1D6K120|A0A1D6K120_MAIZE Uncharacterized protein; Found in the gene: LotjaGi1g1v0653000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121231013..121231420) extracted from Lotus japonicus Gifu genome v1.2.
TTGGGGGCCTCTGTGTTGAATTTGTACATTGCAGGTAGCATCACAACCAAGGAGCTTGGAACTGTTATGCGGTCATTGGG ACAGAACCCAACAGAGGCAGAGCTCCAGGACATGATCAATGAGGTAGATGCTGATGGTAATGGAACCATTGACTTCCCCG AGTTCCTGAACCTCATGGCGAGGAAGATGAAGGACACCGACTCTGAGGAGGAGCTGAAAGAGGCGTTCCGTGTGTTTGAC AAGGACCAGAATGGGTTCATTTCTGCTGCTGAGCTCCGCCACGTGATGACCAACCTCGGGGAGAAGCTCACTGATGAAGA AGTTGATGAGATGATAAGAGAGGCTGATGTTGATGGTGATGGCCAGATAAACTACGAGGAGTTTGTTAAGGTCATGATGG CCAAGTGA
CDS sequence (LotjaGi1g1v0653000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTCATTGGGACAGAACCCAACAGAGGCAGAGCTCCAGGACATGATCAATGAGGTAGATGCTGATGGTAATGGAAC CATTGACTTCCCCGAGTTCCTGAACCTCATGGCGAGGAAGATGAAGGACACCGACTCTGAGGAGGAGCTGAAAGAGGCGT TCCGTGTGTTTGACAAGGACCAGAATGGGTTCATTTCTGCTGCTGAGCTCCGCCACGTGATGACCAACCTCGGGGAGAAG CTCACTGATGAAGAAGTTGATGAGATGATAAGAGAGGCTGATGTTGATGGTGATGGCCAGATAAACTACGAGGAGTTTGT TAAGGTCATGATGGCCAAGTGA
Protein sequence (LotjaGi1g1v0653000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK LTDEEVDEMIREADVDGDGQINYEEFVKVMMAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 1.4E-81 | – | |
| SUPERFAMILY | 1 | 111 | 111 | 3.41E-43 | ||
| PANTHER | 1 | 107 | 107 | 1.4E-81 | ||
| Pfam | 1 | 39 | 39 | 3.3E-10 | – | |
| Gene3D | 1 | 74 | 74 | 6.5E-48 | – | |
| ProSiteProfiles | 8 | 43 | 36 | 14.541 | ||
| SMART | 12 | 40 | 29 | 2.5E-8 | ||
| CDD | 12 | 75 | 64 | 1.63092E-11 | ||
| ProSitePatterns | 21 | 33 | 13 | - | ||
| ProSiteProfiles | 45 | 80 | 36 | 17.554 | ||
| Pfam | 47 | 110 | 64 | 8.0E-19 | ||
| SMART | 49 | 77 | 29 | 3.1E-8 | ||
| CDD | 49 | 111 | 63 | 2.50351E-23 | ||
| ProSitePatterns | 58 | 70 | 13 | - | ||
| Gene3D | 75 | 111 | 37 | 6.8E-18 | – | |
| ProSiteProfiles | 81 | 113 | 33 | 15.183 | ||
| SMART | 85 | 113 | 29 | 3.0E-9 | ||
| ProSitePatterns | 94 | 106 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Calcium-mediated signaling | Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. |
Expression pattern of LotjaGi1g1v0653000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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