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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0655400 |
| Transcript ID | LotjaGi1g1v0655400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-L-arabinofuranosidase 1; TAIR: AT3G10740.1 alpha-L-arabinofuranosidase 1; Swiss-Prot: sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1; TrEMBL-Plants: tr|I1N8I8|I1N8I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0655400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121504377..121509167) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGTTAGTGATCTTATTCCTTTATAAATAGAGGTGGTAGCTAGGAATGAAATTGTTCATATCGAATTAGAAAAAAAAT GTCTTTCTTTACTAGTTCCTACAAAGCTTTTCTTTACTCTTGGTCTTTGCTAGCAATTTTGGTCATTCTTCAATGCAGTG CTGATGGAAATTACACATCAACACTTGTGATTGATGGTTCGCAAGGATCTGGAATGAAAATTCCAGACACATTTTTTGGA GCATTCTTTGAAGTAAATTACTTCTTCTTATTCTTCTATTTTTTTTTTTGCAGAGTTTACTTTAATTAGTTAGTTATTAT TTCACAAAGTGACCAATAAAAACTCTTTGAATGTCTTTGGTAGGAGATTAACCATGCTGGAGCTGGAGGATTGTGGGCAG AACTTGTGAGGAACAGAGGTCATTCATTATAACATTTTAACCTTTTTTTTTTCATAAAGATCAATTTCAACATTTTCAAG GATAGATTTATTTTACTTTTACATTTTAAAATTAATGTTTCAGGTTTTGAAGAGGGAGGCCCCACAATTCCCTCAAATAT TTATCCTTGGACAACAATTGGAGATGAATCATTAGTATATGTATCAACTGATCGAACCTCTTGTTTTGAGCGTAATAAGA ATGCCCTGTATATAAAGGTTCTTTGTGATGGACCCAAAACTTGTCTACATGGTGGTGTTGGTATCTCCAACCCTGGTTTT TGGGGCATGGTACTTGATCAATCTCACATTTTTATTAAGATATGAAATTGACAAGAAAAATATCATTAAAATAATTTCTG ATGTATATTCTCTATTTTTTCTTTTTAAATCAGAACATTGAGAAAGGGAAGAAATATAGAGTGGTCTTCTATGTTAGATC ATTACTTGGTGAAATTGATCTAGAAGTTTCATTTGTCGGCTCTGACAATGGTACAAAACTGGCTTCAACTCGCATAAGGT GAGTTCACTATCATCGCTGATTCAAACATGCTATTATATTAAATTTCCCTTTTAAGACTACATTTATTTTGTAAAAGTAA AAATAAATTGATTACTAATCTTGGCAGGGATTCTGGGCATCAAGTCGAAAGGTGGAGAAAGATTGAGACCATACTTGAAG CCAAGGATACAAATCATTATTCAAGTCTTCAAATAACAACAAGCCTTTCGGGAGTTGTATGGTTAGATCAAGTTTCAGCT ATGCCTTTGGACACATATAAGGTTTGCATGATTGCTTGCAATACTATGATCTTTTCTTTTAAGTGCATTATTATTACTTT AATTTCATAGTTTCATGCATTATTGATAACATTATATTGTCTCTTTGGCACAGGGTCATGGTTTCCGAAAGGATCTTTTT CAAATGGTGGCAGATCTCAATCCAAGATTTTTCAGATTCCCGGGTATGTTAAAAAAAAAATTCAAAAGTTAATTTGTTTT GCTAAGGAGAATAATCTTGTAACTAAATGATTATTTAACAAAGCCTATTATATATTTGAGAATTTTCTAATGTACTTACT AAATAGTTTTTCAATCTAACACTATTTTTTTTTTATGTGGAAATAGGTGGTTGTTTTGTTGAAGGAGATTATCTAAGAAA TGCATTTAGGTGGAAAGACACAGTTGGATCCTGGGAGGAAAGACCAGGACACTTTGGTGATAAATGGCATTACTGGACTG ATGATGGACTAGGCTATTTTGAGGGCCTCCAGGTAGCATCCTTTACAAGTATTGGGCTTTTCTTCTTATCAAAATGTTTA AAAACTGAAATAATTTTTTAGATGTTTTGCCAGACATCCAATCGATATAATATTTACTGCAGTTAAAAATTGTCGTGAAT ATGTATACCATTGGATGTTTGAAAGAAACTATATATTTACAACTCTTTAAAAAAAGTCCCCTATATAGCTTAAGTGATGA AAGGGTTAGGAAACACTCTTGAGAAAAATCCACCCATGACAAAAAAAAGTTTAAAAAGAATTCTAATATATTTGCTTTCT TTGTTGAGCAGCTAGCAGAGGATCTTGGTGCGTTGCCAGTGTGGGTGTTTAACAATGGTATATCTTTGTCCAAATCATTT GTCTCACCAATAAAAAACTGATATGCCATTTAAAACCAAAAAGTAATTAACCATGAATGCATTATGATATTTTTATTTTT TGATTTCTAATTAATGAAATATCTCACTTAGGTATCAGCCATAATGAAGAAGTCAATACTACAGAAATTTTACCGTTTGT GCTAGTATGATTCTTTTCCTCTTCTTTAAGTTCTTATTATTTTCCAATAGTTTTATTTATGAATTTAGTTTTATTTATTT GTGTTCATAATTTTGCAAACAGGAAGCCTTAGAGGGCATTGAGTTTGCCAGAGGTTCTCCAACATCATACTGGGGCTCTC GTAGAGCTGCCATGGGACATCCTAAGCCATTTGACTTGAGAATTGTTGCAGTTGGAAATGAAGATTGCAGTCATTATAAC TACCAAGGTATACATTTTTTTTTTTAATTATAGGATTGTAGATGTGAATTTATTTTACCAATATTTGTTGCATAACTCAA CTAGTCAAAATTTTCTTTTTACATTTTAAATATATCTTAAGCCTATTCATCCATATTGAATTTATTCTTATTTGTCTAAT ATTGTATTTTTTATTTCTCTTCTTGACCAGGAAACTACATGAAGTTCTATAATGCTATAAAACGTGCTTATCCAGATATT CAGATTATCTCAAACTGCGATGGCTCCAAAAGCCCGTTAAAACACCCCGCTGATTTTTATGATTTCCATGTAACATTCCA ATATAAACAATTTTTTTTAATTTTTTTCTTTCTAAATTTACAGCAAATTTGTCACTCGAGCACATTTTAGTATTTACATT CTTAATATGTTTTATTTGTTAATAGCTTTATGGACCTTCGATGGAGATGTTCTCGAGTCATACCAAGTTTGATCATGCAC CAAGATCCGGCCCAAAGGTTTGAGCACTTACATTTTATTAATTTTTTTGAAATTATTGATGGAGTATAACTATATTTTGA TTTATGCATATGATAGATAATTAATTAAATAATTCAACTATTTGCTACTCAGGCGTTTGTTAGTGAATATGCTGTAAATG TGAAGGAAGATGCTGGAACAGGAAGCTTATTATCAGCTTTGGCTGAAGCTGCATTCCTTATTGGACTTGAAAAAAATAGG TAGGAACATGGTTCATGGTCCATTGACCATTGTAGAATTAAACTTTTCTTTCAATTTTATGAACTAGTTTTTGTTAGCTA TATATAACCCGAGTGACTTTCTCATCTTTCATTTTTATGGCAGTGATGTTGTCCACATGGTCAGCTATGCACCTCTCTTT GTAAACTCAAATGACCGGACGTAATTTACTCAAACTATTGATTACATTTATTATTTTCTTACATTCATTTATCTTGTTAC ATATAATTTTTTAGAGTTTAATTTCTATGCACCGACGGTGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTCAAGGA TGTGAGAAAATCTCTCATTTTATTTAATTTCATCAATTGACGTGGCACATCCTTGAAATCTAATTGGTTGACGGTGTAAA AAAACTTTACACCGTCGATGCATCAAACTTTTTCTCAATTTTTTATCAGGTAAGAAAATTGAGATAATTTAATTTCTATC TCTATAGGTGGTCACCGGATGCAATTGTATTTAACTCTCACCAGCATTATGGAACTCCTAGTTATTGGCTCCAACGTATG TTCACAGAGTCAAGTGGAGCAACCTTGCTTAAATCAACACTTCAAACTTCTTCCCAGTCACTTGTTGCATCTGCAATTGA GTATGCAAATTCTGAAGATAAGAAGAATTACATAAGAGTGAAGGTAATTGACTTGCCTAAGTTAATATTTCATTTAGAAT GAATGTGAGTTTAAATTTAACACCTTATTGACTTTGGAATTATTGAATTTTGCAGGTAGTTAACTTTGGAAGTGGTTCTG AGAGCTTTAGGATTTCCATAAATGGATTGAAGTCAAAAGTGAAACAGAGTGGCTCAAGAAAAACAGTCCTCACAGCAGCC AATGTAATGGATGAGAATTCCTTCTCAGAGCCAAACAAGGTAGAATTTGTTTTTCTAAATTATATACATACATATATGAT AAAAAATATCTTAAATTTGGTTTTTGTTGATTTTGTATACAGATTGTGCCACAACAAACTCCAATTGAGGGAGCAAGCAC AGACATGAAAGTTGAACTTCCTCCTCATTCAGTTACATCATTTGATCTATTAAAGTAGATAGGAGTGTTTAATTTCTTAG AATGAATGGGTGGTCAAGACTAAAGCTTGGTTAAGGAAATGTATATTTCTTTTACATAAATAAATTGTTAATTTAGCTCT TTCACAACAAGAAATCTGGTGATTGGGGCTACAATGCAATTTATTAAAGAAACAAGCAGATTATGCATTCAATTTTAATA TAACAGCAATATCAAAAGTCTAAACAAGGTATCAATGACTTGCTGTTTTGGGGTATTTGATCCTCTTGTGCTGTCTGTCA TGTTAATAAAGAGGGAAAACAGTAATACTTAATCTTAGCTGCTTAGATGATTCAACCAATTTGAACTTAAGAATAGCAAT TTTAACCTTACAGCTGCTAATTGACCATTGAAAATACATGATTTATTATTAGTCATATGGAGAAAGGACTACAATTTAAC ATATGGATGAATAGTGAGATTAGCTCATAAGACTCAAATAGGCATCTTCAAGGACAAAATGTTATAAGAAT
CDS sequence (LotjaGi1g1v0655400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCTTTACTAGTTCCTACAAAGCTTTTCTTTACTCTTGGTCTTTGCTAGCAATTTTGGTCATTCTTCAATGCAG TGCTGATGGAAATTACACATCAACACTTGTGATTGATGGTTCGCAAGGATCTGGAATGAAAATTCCAGACACATTTTTTG GAGCATTCTTTGAAGAGATTAACCATGCTGGAGCTGGAGGATTGTGGGCAGAACTTGTGAGGAACAGAGGTTTTGAAGAG GGAGGCCCCACAATTCCCTCAAATATTTATCCTTGGACAACAATTGGAGATGAATCATTAGTATATGTATCAACTGATCG AACCTCTTGTTTTGAGCGTAATAAGAATGCCCTGTATATAAAGGTTCTTTGTGATGGACCCAAAACTTGTCTACATGGTG GTGTTGGTATCTCCAACCCTGGTTTTTGGGGCATGAACATTGAGAAAGGGAAGAAATATAGAGTGGTCTTCTATGTTAGA TCATTACTTGGTGAAATTGATCTAGAAGTTTCATTTGTCGGCTCTGACAATGGTACAAAACTGGCTTCAACTCGCATAAG GGATTCTGGGCATCAAGTCGAAAGGTGGAGAAAGATTGAGACCATACTTGAAGCCAAGGATACAAATCATTATTCAAGTC TTCAAATAACAACAAGCCTTTCGGGAGTTGTATGGTTAGATCAAGTTTCAGCTATGCCTTTGGACACATATAAGGGTCAT GGTTTCCGAAAGGATCTTTTTCAAATGGTGGCAGATCTCAATCCAAGATTTTTCAGATTCCCGGGTGGTTGTTTTGTTGA AGGAGATTATCTAAGAAATGCATTTAGGTGGAAAGACACAGTTGGATCCTGGGAGGAAAGACCAGGACACTTTGGTGATA AATGGCATTACTGGACTGATGATGGACTAGGCTATTTTGAGGGCCTCCAGCTAGCAGAGGATCTTGGTGCGTTGCCAGTG TGGGTGTTTAACAATGGTATCAGCCATAATGAAGAAGTCAATACTACAGAAATTTTACCGTTTGTGCTAGAAGCCTTAGA GGGCATTGAGTTTGCCAGAGGTTCTCCAACATCATACTGGGGCTCTCGTAGAGCTGCCATGGGACATCCTAAGCCATTTG ACTTGAGAATTGTTGCAGTTGGAAATGAAGATTGCAGTCATTATAACTACCAAGGAAACTACATGAAGTTCTATAATGCT ATAAAACGTGCTTATCCAGATATTCAGATTATCTCAAACTGCGATGGCTCCAAAAGCCCGTTAAAACACCCCGCTGATTT TTATGATTTCCATCTTTATGGACCTTCGATGGAGATGTTCTCGAGTCATACCAAGTTTGATCATGCACCAAGATCCGGCC CAAAGGCGTTTGTTAGTGAATATGCTGTAAATGTGAAGGAAGATGCTGGAACAGGAAGCTTATTATCAGCTTTGGCTGAA GCTGCATTCCTTATTGGACTTGAAAAAAATAGTGATGTTGTCCACATGGTCAGCTATGCACCTCTCTTTGTAAACTCAAA TGACCGGACGTGGTCACCGGATGCAATTGTATTTAACTCTCACCAGCATTATGGAACTCCTAGTTATTGGCTCCAACGTA TGTTCACAGAGTCAAGTGGAGCAACCTTGCTTAAATCAACACTTCAAACTTCTTCCCAGTCACTTGTTGCATCTGCAATT GAGTATGCAAATTCTGAAGATAAGAAGAATTACATAAGAGTGAAGGTAGTTAACTTTGGAAGTGGTTCTGAGAGCTTTAG GATTTCCATAAATGGATTGAAGTCAAAAGTGAAACAGAGTGGCTCAAGAAAAACAGTCCTCACAGCAGCCAATGTAATGG ATGAGAATTCCTTCTCAGAGCCAAACAAGATTGTGCCACAACAAACTCCAATTGAGGGAGCAAGCACAGACATGAAAGTT GAACTTCCTCCTCATTCAGTTACATCATTTGATCTATTAAAGTAG
Protein sequence (LotjaGi1g1v0655400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFFTSSYKAFLYSWSLLAILVILQCSADGNYTSTLVIDGSQGSGMKIPDTFFGAFFEEINHAGAGGLWAELVRNRGFEE GGPTIPSNIYPWTTIGDESLVYVSTDRTSCFERNKNALYIKVLCDGPKTCLHGGVGISNPGFWGMNIEKGKKYRVVFYVR SLLGEIDLEVSFVGSDNGTKLASTRIRDSGHQVERWRKIETILEAKDTNHYSSLQITTSLSGVVWLDQVSAMPLDTYKGH GFRKDLFQMVADLNPRFFRFPGGCFVEGDYLRNAFRWKDTVGSWEERPGHFGDKWHYWTDDGLGYFEGLQLAEDLGALPV WVFNNGISHNEEVNTTEILPFVLEALEGIEFARGSPTSYWGSRRAAMGHPKPFDLRIVAVGNEDCSHYNYQGNYMKFYNA IKRAYPDIQIISNCDGSKSPLKHPADFYDFHLYGPSMEMFSSHTKFDHAPRSGPKAFVSEYAVNVKEDAGTGSLLSALAE AAFLIGLEKNSDVVHMVSYAPLFVNSNDRTWSPDAIVFNSHQHYGTPSYWLQRMFTESSGATLLKSTLQTSSQSLVASAI EYANSEDKKNYIRVKVVNFGSGSESFRISINGLKSKVKQSGSRKTVLTAANVMDENSFSEPNKIVPQQTPIEGASTDMKV ELPPHSVTSFDLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 10 | 24 | 15 | - | – | |
| PANTHER | 11 | 653 | 643 | 0.0 | – | |
| PANTHER | 11 | 653 | 643 | 0.0 | – | |
| Phobius | 25 | 28 | 4 | - | – | |
| Phobius | 29 | 654 | 626 | - | – | |
| SUPERFAMILY | 214 | 543 | 330 | 8.43E-77 | ||
| Gene3D | 220 | 534 | 315 | 1.0E-74 | – | |
| SMART | 459 | 646 | 188 | 2.2E-68 | ||
| Pfam | 460 | 646 | 187 | 1.0E-37 | ||
| SUPERFAMILY | 526 | 650 | 125 | 1.55E-5 | – | |
| Gene3D | 535 | 652 | 118 | 4.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | L-arabinose metabolic process | The chemical reactions and pathways involving L-arabinose, the D-enantiomer of arabino-pentose. L-arabinose occurs free, e.g. in the heartwood of many conifers, and in the combined state, in both furanose and pyranose forms, as a constituent of various plant hemicelluloses, bacterial polysaccharides etc. | ||
| Molecular function | Alpha-L-arabinofuranosidase activity | Catalysis of the hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides. |
Expression pattern of LotjaGi1g1v0655400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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