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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0655700 |
| Transcript ID | LotjaGi1g1v0655700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G53840.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840; TrEMBL-Plants: tr|A0A0B2S773|A0A0B2S773_GLYSO F-box/FBD/LRR-repeat protein; Found in the gene: LotjaGi1g1v0655700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121529223..121534966) extracted from Lotus japonicus Gifu genome v1.2.
CCCAGTCTCACATTCCCATCACACACAATTACTCGAGGTAATTCCAAGCCCATGATGGGCTCCACTGCCGTTCGCACTGC TAGCAGCTTGGTCAAGAAGACATTTTCAGTTCAGAGTGCCAAGATTACGACTAAAGCCCTTTAGCCAAATGCCAGCAGCA TCCCGAATAACAACCCCATAGCTGGAACTGAGGCAGTTACTAATAGCCCAATCCACATTGACCTTTAACCAGCCAGCGTC TGGTTTAATCCAACCCGAGTTAGCTAGCGGTACTCACCATGCTGCAATCAAAAGTCACACATTGGTCGTAAGCAAATCCT GGAAAAGATCCAATTTCCACCCGGTAGCCATATCATTGAAGTGAGAAAGTGGAAGCTCAATCTCAGCATGAGGAATGGAG AGAGTTGCCAGGTCTTGTAAAATATGTTCAGACACATTCTAAAGTCGCATAATCAAAGGGTAAGCATTTTTTTTAACACT GCCTTCAATTGTTCTTTATAACCAGATAAACATCATGCATCAATTTCCCAGTTTCCTACATAATTAGTTAGTTATTAATA CATAGCAGCATATATGAATATGTTGGTCTGAGTTCAAAAGTCATATCATTAACTAAAGAACAAAAACAACTAACTAGATT TCAGAGGGATCCATTTTTATACACACCAGAGATTTCCATCTGTGGTAAAATATTACTTTTGTTTATTTGCCCTCCAGGTT CTTACACAGCAAAGAATGGCTGCACTGCCTGTATTTGAAATGTTGACCCATTTGGAGCTTAGTTTTTTGACTGGTGGAGT TTTGTTAGGCCTATATCAAAGGTCGCCAGTTCTCAATACTCTACGTCTCAAGGTCAGTAAATGAAACTAGCAAAACTACT CTGCCTGCACCTTTTTCTTTTCTCCCCTAAATTGCTTGTTATATACTAACTGCTTGTTTTGGATCATGTACCAAAATCTT CCGTCTCGAGGCAAAAAATAGAAGGAAGAAAAGGTTACTTTTTCGGTTATAGGATTTTGTTACATGATCCCAAACAAGCA CTAAGATTTGTGAAGTCTCTGTCTTGATTTATATTGCAGGCGTAATTTTTTATTTTTTTTGCCGAAGTTTCTTAAAAACT TTTTTAAACCTTACACTAGCAGTCTTATATTTGGACTTTATTTGATGATTTGTCATCAGGGAATACCAAAATTCGACCAA GAGCTTATGGATTCTGCTGTGCCTGCCTGTTTGGCATCTACCCTCCAATTTGTGCAGTTTGAAAAAGTTTATGCACTCAA GCATGAGCTGTGTTTAGTTAAATTTGTGATGGAAAATGGCCTGGTGTTGAAGAGGATGAGTTTCGCCATTGTGAGAACTA TGAAGGGCAAGCTGAAGATCATTGACGAATTTAGAGAGAAAATGCACTCATTTAAGAGAAATTCGTCTTTTCACTATGTG GATTTTTCGTATGATTACAACAATTAGGGGTACATATCTACAATGTTTTCTGATACAATGGTAGAAATTTTCTAGTGTAA AGCAGCTCAGCCCTTTCAATTTTCCCCCATCATTCTTTAGTACTATTTGGATAAAATAGTCCTTCATGACAGCAAAAGTG ATTTGAGCACCCTCTTTCTGCAGATACTCCCAAGTTCCCTTTCCTCTATTCTGTGTTAAACTTTTTTTTTCTGGGTCCTA GTCTAGTGAATCCTAAATCCTAAATCTTGGGTCTTAGATAGAAAGAAAGGTCTAGAAAAGAGGGAAACAAATTCAACATG AAGAAAACTAACTTATCTCATATGGTAAGGGGAGAGAGATAGAGGAGAGGTGGGGATTCTTTCCTTAATTTTCTCTTCCC CTCCCCTTTCATACGTCAAAGCAAATCTACTACACTTTAAAAGAGACTCATGAATTCACTATTCCTAAAAGAACTTCCAA TCCTGGCCGTTTATTTGACTCTCTCTCCATTTTCACTCTTTAATCCTGCCCCTTCATCTGTGAAACTTTTTTCTCCTCTA TTCTACTCGAACTTCTCTGTTTGGCTTATGTCACTGATGGCGTTGAAGCAGTATGGGATGAAGGAGAGGAGTGTTTCCCT GGTATAAGTTCGTCAGTTATAGTCACCCTGCAGGCCCTGTCTCTGTCGTGGATGAATGCGAAGTGGGTACCCATGGTCTT CGTTCGTGAGCGATCGTCATTCTTTCAGGTACGTCCTCTGTTCCAGTGGTTAGGTTGCATAAGGAATCAAAGCAGGAATA CGAAATGTTATGTTTTACTGTTGAGCACAATTTTGTGTCAAATTTCGTCACCATGACCCATGTTTCTTCAATCCTTTCTG TGTTAGGTGAAAATCAGAAGGAAGATAATAGATTATTCAGGAAATTGTTCAATTTGTTCACAATTTGTTGTCAACAGATC ATGTGTATCAGAACTCATATATGTGCTTTACTTTGTCAGTTGATTGTTTCAATGTCAGTTGAGTACAACAGGTTTGGTAT GCATAGTTGTCAAGCAAGTTTGATTCTGACATTCAATTGAATTTAAGTGAATTTAATCAAATTCTCAAAGGTTTCTCGGA AGTACAGGAAGCAGAAGCACAGATCATGGGAGAAGGTTCAATTTCGTCAGATGAACAGGTTCGTACTCTTCCCTTCAATC CCCCATGCCTCCACTAAAATTCATGATTTAATCTGGACAAATAGTTAACCTATCCTATGCGAATGACGTTCTACCGGTAG ATTTATGGGTTTTATTTTTTTATATTAAGGTTTTCATCCCAATCCCTCTATAAATACTGCTATTGTTTTTGTGTTTGTTG CTGTCTGCTATGGCTGGATCATTGAATCCCCTCCGCTCCATATGAACCCTCAAAACCATATGCTCTGCATCTTGTGCTTA TTGATGGAGAGGTTGTATACCAGTATTGTCATTTCTTTTTAGTTAGTCATCTTATAGTTACTACATTTATATAATACTTA TTTTTTGTTGTAGCAGGGCGTGGAAATTGAAGGCTGAATTGGATAAAGATAGGAGTGTGACTATGGAGCTTCAGTCTTGC TGTTGGTGAAGCTAAGCCATTGGCAACAGTGGAAAGGTGAGAAATTTCATGGGTTGTATTTTCAGAATTTCCTGATAAAA TATGGAATGTGTTTGAACTTCAAATACCCTTCATAAGTTCCAATAAAATGTTGATAACTTATTCTGTTTATAATTCCAAG GCGATTGCTTATATTTTCCATAATGATAATGCCATTTCTGTTTATAGGTAGCTCTCTCTGCATTGGATAAGTCCCTTTCT AAATTAATAGAATTTAATCCCCCTTCTTCTATTGTTCTAAGTATATTAAGTGATATTCCAGTGACGTGCCCAACTGGTAA TATTTTCCCTCGCCACAACAATCAACCAGGTGGGAAAGAAACACCTGCAGTTGTGATAGTTCTGAAAATAACCTCTTCGA TGTCATGGAAATTGCTTTGAGCTTTGATCAAGCTGATTGTTGAAAGATTTTTTACCACTCTACGTTTGAATCTCTCAAGA CTCAATTGTAGTATAGTAAAAGGTTTTGTCGTATCCACAGGGAGGTGTAATACTTATGCCGTTCAATAGTTATCAAGCTT AAATGATGGTTGCACAATAGTTTGATTTTTGTTTAAAAACATAAAAGTAAATGAAAATAAGTAAAATAACGGAGAAACAA CAGGTATGAGGAATTGTTGGGATGAGATTTCATTGAATGGCCTCTGTGCCTTCTAGTGATTCAAATACAACCAAGTCTAT GCTTATGACTCATCTACACTAGTTCAACCCTACATCATCGATGTCTCGCATGAGTGGATAACAATAACTCTCTAATCCTA AACATTTATGTCTCACATGATTAAGAAAGATAGTTATCATGAAGCTTTGGTGTTTAAGTGACTAACAAACCTAACTCTAT GTCTAGCAATTAGGATTATTAGGTGATTAACTCTAGTTCGGACTCTAGGCGATATAGCTCTCGCTCTCACGCCGAATCAA GCATATATGTTCTAGGTGCGCAAACTAAAACATAACATGAAGATCAAGAGAGAATCACTAACTCATAAACAAAGAACATG ATTTATATCAAGGAGAATCAAATAGAAAACATAAGTATCAATCAATTACATCAAACCCCAACAAAAGAGAGATTAGTTAT CCATTTTCATGGATAACTTTACAAATAGAGAAGAAGAATGAGAAGAACTGAAACCGTCGCGATGTCTCGCCGCCGAATCC GATGTCCAAGCCTCTTCTCTAGCCTCCTAAGCCTCTCTCCATGTTTCTCTTGTGTTTCCCCTCTGTTTGGGTTCTGTTCT GATCAAGATATCTCCGTCAAAATATGAAAATGACCTTTTTATAATGTGCTGTCGAGTGCCAGAGCGCTGAGCGCCCCTAT TTGGCCGCTGAGCGGCCAGTTACTTAAAAGGAAGATTTCTGGAACCTCCATGGGCGCTGGGCGGCCTCTGCAACCCGCTG GGCGCCCTGTACATCTTCAAAGTCCATTTTTCTTGCCAAAACTTGCCCTCTTCCTTGAATCTTCAATCCTACAATACAAG TTGAGATTAAAACAAACTTAAGCACATTTTAGCCTAATGTTTACCTATCAATAAGTTCTAATAAAAAAAAGTATGATTTG ATCAAGATTTCTCATGAATTTACAAAGATAAGTGTCTAAATTGCTCATCAAAACTAGGTAAAATTGACACTTATCACTGA TGAATGGTGGGGAAATACGCTTATAAGCATGATTAAATCAAATTTAAGACTTATTCTCATGGTCATGAGAATAAACTTCT GTCTTTTTGTTTACTTATATTTAAGGATTGAGTGAAGGTACTAAAATGCCAACCAATAAGCTTCTTATTTAAGCAACATA TAACTAAGGGAAGAAGTCGACTTTCAAATTCTGATGTGGTTATACACTTATAATTTGTTTTATTGTTGATGGACATGAAT TTAATTGAGAGTGATTCTTCATTAGCAGTGGGGTGGGTGAATAGAAAGGAGCACAGACCATGGAAGCTTTTTTCTGTTTT GGACTATATTGATTGGCTGGTTGTGGAGGTTAATTGTGTGGTATTAGGCATATTATAAGGGAAGGGAATGACATGGCTGA TTGTCTAGCAAAGAGAGGTCGGGATAGGGTGATTGATTCCATTGCGGGCTTGCTTTTCATGATACAGAAATTGTTTTGTT GGTTTCTGCATTTTGGACTGCATTTCACATTTGTGACTGAGGAGCTGGTTACATATGCTTCATGTTTCTGTGATATTGAT TTGTTTGCTTTATTCAGGGTGTTGGGAGTGTGCAGGTTTTGCTTGGACAGAAGTTTCGGCTTTTTGCAAATCTTGGACCA AATGGGAAATTCTCTGGTACTCACTTGGTGGGAGTAGCAGAGAAATTGGTTTGAAGGGTCAGGTTTGTGGCCATTGTGTG AAGTTCTACAAGGAGACATTTAAGACCCTTGGAAAAACTGTTGCAATACATAGGATGCAGATTTGGAAGATGGTGCAACC AAATTGTTACAGGGTTTTGTATTCACCCGTTAATCTAGCATGAAGAAGTTGTAAATTTGATCCTTGTACTTCTACTATGT TTAGTTGGATCTTGTCTTATGTTGTTCTACTTTGTTTTTGGTTACATGGTTCCCAATATGTACTTAACTAGAATACTATC CTAAGTCTGTGATGCATCTGGATTTTAATTTGCCGTGACTTTGGATGTTTTTTTTATGCGTTGA
CDS sequence (LotjaGi1g1v0655700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGACACATTCTAAAGTCGCATAATCAAAGGGTTCTTACACAGCAAAGAATGGCTGCACTGCCTGTATTTGAAAT GTTGACCCATTTGGAGCTTAGTTTTTTGACTGGTGGAGTTTTGTTAGGCCTATATCAAAGGTCGCCAGTTCTCAATACTC TACGTCTCAAGGGAATACCAAAATTCGACCAAGAGCTTATGGATTCTGCTGTGCCTGCCTGTTTGGCATCTACCCTCCAA TTTGTGCAGTTTGAAAAAGTTTATGCACTCAAGCATGAGCTGTGTTTAGTTAAATTTGTGATGGAAAATGGCCTGGTGTT GAAGAGGATGAGTTTCGCCATTGTGAGAACTATGAAGGGCAAGCTGAAGATCATTGACGAATTTAGAGAGAAAATGCACT CATTTAAGAGAAATTCGTCTTTTCACTATGTGGATTTTTCGTATGATTACAACAATTAG
Protein sequence (LotjaGi1g1v0655700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRHILKSHNQRVLTQQRMAALPVFEMLTHLELSFLTGGVLLGLYQRSPVLNTLRLKGIPKFDQELMDSAVPACLASTLQ FVQFEKVYALKHELCLVKFVMENGLVLKRMSFAIVRTMKGKLKIIDEFREKMHSFKRNSSFHYVDFSYDYNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 15 | 145 | 131 | 1.8E-34 | – | |
| PANTHER | 15 | 145 | 131 | 1.8E-34 | – | |
| Phobius | 21 | 45 | 25 | - | – | |
| Phobius | 46 | 152 | 107 | - | – | |
| Pfam | 69 | 112 | 44 | 4.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0655700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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