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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0657700 |
| Transcript ID | LotjaGi1g1v0657700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT5G07050.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050; TrEMBL-Plants: tr|I3S1Y1|I3S1Y1_LOTJA WAT1-related protein; Found in the gene: LotjaGi1g1v0657700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121776997..121779310) extracted from Lotus japonicus Gifu genome v1.2.
TAAGTTTTTAACATTTGTAGTGCTTCTGAGCACGATTCTCCCCCTAGGGAGGACTATAAATACCATAGAGTGGGTAACGT TTTTAACTTAGGAGACACAAACAACTTCGAGTTCAAGTGTTCTTCCTCTCTAGTACAAAATTCTCTGCCCCTAGTAATTT TTCAGCAAACAAAAATGGAAGGAGATAGTTGGTGTGGTAGTTTCTTCCAAAGGTCCAAACCTTACATAGCCATGATTTCT CTGCAATTCGGGTTCGCTGGCATGAACATAATCACCAAGGTTTCACTCAACCGTGGAATGAGCCACTATGTTCTTGTGGT TTATAGGCATGCTTTTGCTACTGCAGCAATTGCTCCCTTTGCACTTGTTCTTGAGAGAAAAGTGAGGCCTAGGATTACAT TTGTCATGTTCATGCAAATGTTCGTGTTGGGTCTACTTGGGTTAGTAATTTCCTCTCTATAAAACTTGGTATTCAATGTT AAAAAAAATGTGTTCTAAAATTTGTTGCTTTCCTCTGTTTTTATACTCTGTTTTTATGCTCTGTTTTCCTCTGTTTTTAC AGGCCTGTGATTGATCAGAACTTATACTATGCGGGGTTGAAATTCACTTCTCCAACTTACTCATGTGCTTTAAGCAACGT GCTTCCTGCAATGACGTTTCTTATGGCAGTGATTTTCAGGTATTAATCATTAATCTCATTTATCTTGCTCTATTTAACTC TGTTTTTATGCTCTGCTCACTTTGTCTGGTTTTTCTATTGCTTTGAGCTAACATGATTTTTTGCTATGTGATTTTGATGA ACTAGGATGGAGAAGGTGGACATTAGAAAAGTTAGATGCCAAGCAAAGGTGTTAGGAACTGGAGTTACAGTTGCTGGGGC CATGTTGATGACATTGTACAAAGGGAAAGTCATCAATTTTTTGGGGTCTCAGTACATGCATCATCCAAGAAACTATGAGC CAGTGAACACCAATGCTTCTGCTGAACAGGATTGGGTTAAGGGTTCTATTCTTCTCATAATTGCAACCCTTGCTTGGGCT TCTTTCTTCATCCTTCAGGCAGTGACATTAAGGAAATACTCTGCTCAGCTCTCACTCACAGCAATAGTGTGTTTCTTGGG CACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGCACAGTCCTTCTGTTTGGTCCATTGGCTGGGACATGAACCTGC TTGCCGCAGCCTATGCGGTAAGTTATTTAACGGTCACCTAACCACTTAAAAATGTCACATGACTTAGTTTTTCAATGTTA ACAATTTATGATAAAATCTAACCATCATAATTTATTCTTATCATTCTCAGGGTATAGTATCATCTGGAATTACCTACTAT GTTCAAGGGATTGTGATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTCAGCCCTTTGATGATGGTCATAGTGGCCAT CATGGGCACTTTCATTCTAGCAGAAAAAATCTATCTTGGAGGGTAAGTCCTTATTTCACTATTTCCACTTAACATTTTTC AAAGTTCTTATCATAAACCAAAAGTGATGATGCATATTGCATCCATACGAAACATCACAATCATGTAAAAGCACAACGTC TGATAATATGGCAAACAATTAATGTAAGTTATCAGTGCAATAATTGATGTATGTTTATTTATTTTCAGGATCCTTGGAGC TATTCTGATTGTAATAGGACTTTACCAAGTTCTATGGGGAAAACAGAAGGAGCAAGAAGAGGAAACAGTAGAGGTAGTCA CTGAGGTGATGAAGTGCTGTGAAGAAAATGGGAGGATGGAAACTGTGATGGAAGAAAGTGTTGAAACAAATGACATTGAG AAGCAAAAGGGTGAAGATTGCAAAGAATTCAGGGTGGTTATTGGTGTTCCGAAAGCTTGAACGAACTAGAGATTAGGAAA TTAAGGGTGAATAATTCTATGGAGAACAGAGAAATTGCGAGGGGTTTTTGTTTTGTGTACCTTCATCCTCATTCTCACTG TTTCTGAAGAGAAACTTTTGTTAATGCTTTTTCTTTTCATGGTATGATTAGGACCATTATGTGGTGGCCTAGTTGCCCAT GATGTAACTTAAATTTTGCTTACATTCCTCAAAGGAAAATTATATGTATATTGCACAAATCTCTCTCTCTCTCACCCTCT CCCTCTCTCTAATACAAATATCATAATGCCTTATTATGAGATAATTGCTTAAACTCTACACCCTAAGTCATAGAGGTTCG AATACCATATTAAATAATTACTTATTTCAAAAGCTTAATATGTATAATATGAAACAACTCTAATTCATTTACAC
CDS sequence (LotjaGi1g1v0657700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGATAGTTGGTGTGGTAGTTTCTTCCAAAGGTCCAAACCTTACATAGCCATGATTTCTCTGCAATTCGGGTT CGCTGGCATGAACATAATCACCAAGGTTTCACTCAACCGTGGAATGAGCCACTATGTTCTTGTGGTTTATAGGCATGCTT TTGCTACTGCAGCAATTGCTCCCTTTGCACTTGTTCTTGAGAGAAAAGTGAGGCCTAGGATTACATTTGTCATGTTCATG CAAATGTTCGTGTTGGGTCTACTTGGGCCTGTGATTGATCAGAACTTATACTATGCGGGGTTGAAATTCACTTCTCCAAC TTACTCATGTGCTTTAAGCAACGTGCTTCCTGCAATGACGTTTCTTATGGCAGTGATTTTCAGGATGGAGAAGGTGGACA TTAGAAAAGTTAGATGCCAAGCAAAGGTGTTAGGAACTGGAGTTACAGTTGCTGGGGCCATGTTGATGACATTGTACAAA GGGAAAGTCATCAATTTTTTGGGGTCTCAGTACATGCATCATCCAAGAAACTATGAGCCAGTGAACACCAATGCTTCTGC TGAACAGGATTGGGTTAAGGGTTCTATTCTTCTCATAATTGCAACCCTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCAG TGACATTAAGGAAATACTCTGCTCAGCTCTCACTCACAGCAATAGTGTGTTTCTTGGGCACACTGCAATCAATTGCAGTT ACCTTTGTCATGGAGCACAGTCCTTCTGTTTGGTCCATTGGCTGGGACATGAACCTGCTTGCCGCAGCCTATGCGGGTAT AGTATCATCTGGAATTACCTACTATGTTCAAGGGATTGTGATGCAAAAGAAAGGGCCAGTTTTTGTCACTGCTTTCAGCC CTTTGATGATGGTCATAGTGGCCATCATGGGCACTTTCATTCTAGCAGAAAAAATCTATCTTGGAGGGATCCTTGGAGCT ATTCTGATTGTAATAGGACTTTACCAAGTTCTATGGGGAAAACAGAAGGAGCAAGAAGAGGAAACAGTAGAGGTAGTCAC TGAGGTGATGAAGTGCTGTGAAGAAAATGGGAGGATGGAAACTGTGATGGAAGAAAGTGTTGAAACAAATGACATTGAGA AGCAAAAGGGTGAAGATTGCAAAGAATTCAGGGTGGTTATTGGTGTTCCGAAAGCTTGA
Protein sequence (LotjaGi1g1v0657700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGDSWCGSFFQRSKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPRITFVMFM QMFVLGLLGPVIDQNLYYAGLKFTSPTYSCALSNVLPAMTFLMAVIFRMEKVDIRKVRCQAKVLGTGVTVAGAMLMTLYK GKVINFLGSQYMHHPRNYEPVNTNASAEQDWVKGSILLIIATLAWASFFILQAVTLRKYSAQLSLTAIVCFLGTLQSIAV TFVMEHSPSVWSIGWDMNLLAAAYAGIVSSGITYYVQGIVMQKKGPVFVTAFSPLMMVIVAIMGTFILAEKIYLGGILGA ILIVIGLYQVLWGKQKEQEEETVEVVTEVMKCCEENGRMETVMEESVETNDIEKQKGEDCKEFRVVIGVPKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 9 | 358 | 350 | 4.1E-194 | ||
| PANTHER | 9 | 358 | 350 | 4.1E-194 | – | |
| Phobius | 16 | 33 | 18 | - | – | |
| Pfam | 16 | 157 | 142 | 5.1E-12 | ||
| TMHMM | 17 | 34 | 18 | - | – | |
| Phobius | 34 | 44 | 11 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 45 | 66 | 22 | - | – | |
| SUPERFAMILY | 50 | 160 | 111 | 4.05E-8 | – | |
| Phobius | 67 | 72 | 6 | - | – | |
| TMHMM | 73 | 92 | 20 | - | – | |
| Phobius | 73 | 92 | 20 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 112 | 129 | 18 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| TMHMM | 141 | 159 | 19 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| Phobius | 160 | 190 | 31 | - | – | |
| Phobius | 191 | 211 | 21 | - | – | |
| Pfam | 193 | 331 | 139 | 9.2E-15 | ||
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 223 | 243 | 21 | - | – | |
| SUPERFAMILY | 230 | 336 | 107 | 2.35E-7 | – | |
| Phobius | 244 | 254 | 11 | - | – | |
| Phobius | 255 | 275 | 21 | - | – | |
| TMHMM | 258 | 280 | 23 | - | – | |
| Phobius | 276 | 286 | 11 | - | – | |
| Phobius | 287 | 306 | 20 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 307 | 311 | 5 | - | – | |
| Phobius | 312 | 331 | 20 | - | – | |
| TMHMM | 313 | 332 | 20 | - | – | |
| Phobius | 332 | 392 | 61 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0657700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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