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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0661600 |
| Transcript ID | LotjaGi1g1v0661600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G41130.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O80674|BH106_ARATH Transcription factor bHLH106; TrEMBL-Plants: tr|I1N8Q5|I1N8Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122254864..122257582) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTTTGATTTCAATTTCCACCCTTTGGGGTCTCAGTCAAAAAGTGTAATGATAAGCACCACTCCACGTTCACAAGCAC AAAAACTGAAACTGTACCACGCTCTCTCACTCCCTCCTTATTATAGACACCATCACCATTCCCCTACCTACCACTAGTAC CTACAACACTATACACACTATACCCTCCACTCAGACAAGCACTCCCTAACTAGCTACTTCCATTATCATCATCATCATGT TGCAGCAGCATCAGATTGGGAATATGGAGAACTCATCAGAGCTGTTCCAATTCCTTACTGGCACCAACAACAACGCCTCC TTCTTTGAGGCTCAGCCACCATCGGTGCAGAACAGCTTTTGCAGTTCCTCTAATAACAACTATTACCCCTTGGAAGTGTC TGAAATTACAGAAGCAGCACCCTCCCAGCAAGATAGAAACCTAGCAGCTATGAGGAACCACAAGGAAGCTGAGAAGAGGA GGAGGGAGAGAATTAACTCCCACCTCGATGCCCTTCGCACCCTTCTCCCTTGTAATTCCAAGGTAACAATCATATGCATG CACACAACATAAACATGTAAGATTAGAGGCAAATATCGACGCTACGCAGGTTCGAGTCGTGGAATCAATGACTTACATTG CCTATTAAATACATAAATTGGTTTCGGCCCCTCCTTAAACCCCGTGAACAGCGTGAGCTTTATAGCACCAAATTTGCACT AAGTATGTTTGGTTATAAGTTTTGATGGTTGGAATCACTATTCAAAGGGTTTAAAGTATTGTCTCCATGAGCCATTTCAA AAAAGCACCATTGACTTTACAAACATGCTAGAGTTCCTTTTTGAGTAATTGTGTTCTCATTCACTGTTGGGCTTGTTGAG TTTTGGTTGTTGAGAAAAAGGGTTAGTTGTCTGTAGAATTTTTCTTCTCAAAGGAAGCACACTTTTGACCAACAAAGGTG AATGTAATGTATGTTTAGGTTTGACTGAAATTTTAGTTTCTATAGAAATAAAGTGGAATGATCAATAATGAATCATCCTC ATTTTTCATTTGCTTTTCTCTAAGATTCTTGTTCATATCATGATTCATTGAGCTTCCTCAAAAGCTTCAATTCATTATTG TGTTTTGTGAAATTCCCTCTACTTCAGCAATATAAGATATTACTACTAAAAGTGCATTTTTTTTTTATATAATTGATTAT GCAACCGAAATCAATTTTGGTGAGAAATTTCTGTAATTAGCATTTGAATGCCAAATTGATTTTGATAAAAAATAAGTTTA TAGCAAGATACTATAAACTAGTAATAATTGAGGGGAAAATAATCACTTAATATCCATGGTTCTGAAGAAATTAAAATAAA AATGTGTGATTAATTGTTTATGTTTCAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCCAGCGAGTGAAGGAGCTGA AGCAGCAAACATCTGAAATCACCAACCTGGAAACTGTTCCATCCGAAACAGACGAGATCAGCGTCCTCTCCAGCGGTGGC GCCGGCGATGGTAGGCTCATATTCAAGGCATCACTGTGCTGTGAGGACCGCTCCGACCTCATCCCGGACCTCATTGAGAT CCTCAAGTCACTTCATCTGAAGACCCTCAAAGCTGAAATGGCCACACTCGGAGGAAGAACGCGCAACGTTCTCATCGTCG CAGCTGAGAAAGACCACAGCATTGAATCCATCCATTTCCTTCAGAACTCGCTCAGATCATTGCTGGACCGGTCCAGCTCC GGCGACAGATCAAAACGTCGTCGTGGGTTAGACCGAACAATGATGGCATGACTTACCAACATGCAAAATGAGGACATTTT CATTCCATTATGTGTCATTTCAGTGCGTATTTGGATTTCGTTGAATTTGTCCAACCTCAACGCTCACAAAGTTTTGCTTC TTTGTTCGTATTTTAGGATGTGACTCAAACTTGAAAACATACATGCTAAAGTATAGATGGAGAAGCAAAATTTTAGTATG AGTTCAACTAGAATCCGAGCACAAATGTAATGTTTAGGTATTTTGAGTAGGATGTGTTCATGGGTTTTAATTTTTAGGTC TCTACATGTAAAGGGAAAGGTGGTCAATAAATGTTGTTTGAGAATATTTATGAAATTTGATCACAAACATAAAATCAATT CTGATGAGAAACCTTCTAGAAGAAGTTAGTGGAATCATAAGTTAAATACATTATGATTTTGTTAAGATCATCAATGAGTT AATTAGTTACCAGAGTTAAAGAATTAGCCATGAGAATGGTTTTATTGTTTAACACATGGTTAATTCCTTAACTCTAGTAA ATATCTCACTGATGTTAACAAACTCAGTTGGTTAGATTTAACTTATTTCATTAACCTTTAATATCTTGGCTTTTGAATGT AAGAGTTGATTTTCAAGAAAGAAAAATAGATCCAAACATGCTATAAGGTTATGTTGGATAGTTAGTTAGGATAGCTATAT AGTTAGGGTTTTTGCATGTGGAGTTTTTTATAGTCTTGCATGTGTAAGTAGGAGAAACAGGAGGTTAAGGATATTTCCGG TGGGTAATGAAGGAATTAAGAAATGTGATTTTTATTTTATTATTTATAGTTACTTACTGTGCAAGTGGAGAGTGAGTACT TTGTGACAGAGAAGAAAAAGGAGTCTGTCTTTTCTGTAAAAGCAATGCTTCTGTGAGTTTCCAAGCTATAGAAAATGGC
CDS sequence (LotjaGi1g1v0661600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGCAGCATCAGATTGGGAATATGGAGAACTCATCAGAGCTGTTCCAATTCCTTACTGGCACCAACAACAACGC CTCCTTCTTTGAGGCTCAGCCACCATCGGTGCAGAACAGCTTTTGCAGTTCCTCTAATAACAACTATTACCCCTTGGAAG TGTCTGAAATTACAGAAGCAGCACCCTCCCAGCAAGATAGAAACCTAGCAGCTATGAGGAACCACAAGGAAGCTGAGAAG AGGAGGAGGGAGAGAATTAACTCCCACCTCGATGCCCTTCGCACCCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTC ACTTCTTGCAAAGGTTGTCCAGCGAGTGAAGGAGCTGAAGCAGCAAACATCTGAAATCACCAACCTGGAAACTGTTCCAT CCGAAACAGACGAGATCAGCGTCCTCTCCAGCGGTGGCGCCGGCGATGGTAGGCTCATATTCAAGGCATCACTGTGCTGT GAGGACCGCTCCGACCTCATCCCGGACCTCATTGAGATCCTCAAGTCACTTCATCTGAAGACCCTCAAAGCTGAAATGGC CACACTCGGAGGAAGAACGCGCAACGTTCTCATCGTCGCAGCTGAGAAAGACCACAGCATTGAATCCATCCATTTCCTTC AGAACTCGCTCAGATCATTGCTGGACCGGTCCAGCTCCGGCGACAGATCAAAACGTCGTCGTGGGTTAGACCGAACAATG ATGGCATGA
Protein sequence (LotjaGi1g1v0661600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQQHQIGNMENSSELFQFLTGTNNNASFFEAQPPSVQNSFCSSSNNNYYPLEVSEITEAAPSQQDRNLAAMRNHKEAEK RRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITNLETVPSETDEISVLSSGGAGDGRLIFKASLCC EDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAAEKDHSIESIHFLQNSLRSLLDRSSSGDRSKRRRGLDRTM MA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 241 | 204 | 2.8E-101 | – | |
| PANTHER | 38 | 241 | 204 | 2.8E-101 | – | |
| Gene3D | 65 | 131 | 67 | 5.2E-15 | ||
| ProSiteProfiles | 70 | 119 | 50 | 15.878 | ||
| CDD | 73 | 122 | 50 | 3.83494E-12 | ||
| SUPERFAMILY | 73 | 128 | 56 | 4.97E-14 | ||
| Pfam | 74 | 119 | 46 | 1.1E-11 | ||
| SMART | 76 | 125 | 50 | 1.5E-12 | ||
| CDD | 157 | 221 | 65 | 0.00695956 | – | |
| MobiDBLite | 222 | 242 | 21 | - | – | |
| MobiDBLite | 224 | 242 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0661600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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