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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0662800 |
Transcript ID | LotjaGi1g1v0662800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein; TAIR: AT2G26850.1 F-box family protein; Swiss-Prot: sp|Q6NLB1|FB118_ARATH F-box protein At2g26850; TrEMBL-Plants: tr|K7KEN7|K7KEN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0662800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122392768..122396931) extracted from Lotus japonicus Gifu genome v1.2.
TATCGCAGGAAGATCGAATTCACCCTTCCCTTCCCTTCCATGGAGGAAGATCACATTGACAGATCTCTCTTGAATTTGCC TGAACCCATTCTGGATTGCATCCTCAAACTCCTCTCACCAATCGAGCTCATCAAAATGTCCATGGTGTGCACTTGTTTAA GGGATGCATGTCGAAGTGATCATTTGTGGGAAAACCACATCAACCAGAAATGGGGTACAATCGTTGGTGATTTTGCTTTC AAAGAGTGGCAATGGCACTTAACAAAATTCAAGTCAGAAGAAGAAGAAGAAGAAGCCCTCTTGGATCAAAATTGCTCACT TGGGTCTTTCTGTGGGTCTTGTCCTTTGCCATGCACTGGCTCATATTTACAGGATTTTAATCAACTTAGGACCTTCTTGC CAAATAACTCCATGTTGGCTCTTTATTTCTCTCTACAGGGTGGCAAGTTTTGGTTTCCAGCTCAATTTTACCGGGTAAAC TCTAGCTTCAATTTCAATTTTATGCTTTTCATTATCAAATTCTCATTACTATTTTTCTTCAGGGACCAAGGGTTCGAGAC GCCTTATTTCGCTATGACTCCACAAGTCAAACCTTCACAGCAAGGTAAGGGAAGAGATGGGGGACACTTTATTATTATTA ACACTTTTCACTTTTTATTTTTGAAATCTTAATTTAATATTAATATTAGTGATTTAATGATGGGATTGGTGGTCTGTGAT TGAATGTGCATTCTGGTGAGAAGCTAGAAGCTATAGTTTCTGGTGCCAGAATTGATTCTGTGAAGAAAAAAAACTTGTTA TTATACCAGGGAACAGAGGGTGGGTGGGCGATGGTTGTTGTGGAAAGGTATCATGTGGGAAAGGCTGAGACTTTCCCCAG TTGCAACCCCTCCATGCTTTTGTCACGTCTCTGACTGTTTGGAAGACTTAAAGCCTGGTGATCATATTGAGATCCAAGGC AAAAAAAAGAGTGACCCTCATTATGGTAGGTTTCTATTTTCTAACTGAACCTCTTTAAAATTTTAAGATGAAAACAACCA TTGGCTTGGATCAGATTTATGTAGGTTGGTTTCAATTATCAATTTTCATCTGCATTGTATGTTAACTTTTCTAATCAGTC ATGTTGATGATACTATGATAGCCTTACCTTAATTTTCGTTTGCAAAATAAATAATTGAGTATTTAACTAAGGTTTTTCAA TTATCACTAAGGAATTGTAATGGATGGATTGCAGAATGGTTTTATGCTGTTATTGGTCACTTGGACTCATGTAATGAGAA CGAGGAGTACTGTTGCTGTCGTCATTCAGGTGAGAAATCATTTTGCATAAATTGAATTGTCTCATATCAATCACATTGTT ATGTTTTGCTGATTAGTTGATTTGTTTCATTATCCTTAACCATTGATTTGTTTGTTTTACTAGAAGCAGAACAAGTAACT TCTCGGAAACAAGAATATATAAAGTTACTGATTTCATCATATTAACTTGAAAACCGTGATGTTTTAACCCTATTGTGAAT TTGTGATGTTATGTTTAATCAGTATGCCTGTCAAAATAAAAATGAGTATCATAATGCCTAGCATTTTGGAGAGGGAATAA ATAGTTTTTTTATTTTTATTTTTTATAAAAAAAGCCAAATTTATTCAATGGAGTATCAGGGCTTCTCCAACCCTTGTACA TAAGTTACTTTAATGAAATTCGAAGTCAAAGTTTCTTGGTAAACATAATCCACATTCCTTTCCTAACATTAACTAAGAAG AAACTTTAACTTTGATTAAAGTCCATAAAAAAGCCATCACATGAGCAGCCCTGAAAGCTGGATGTCACCAACATTGCAGA CCTAACTGATCTTTATGCATGCCAATAGAGCTAAAAGAATGTGCCACTTAGATTGTGTTTGGTTGGAGGGAAGTGGAGGG GAGGGGTTTTTATAAACTTATCATGTTTGGTTCAGGTTTTAGGAGTGGAGTGGAGGGGGCCAAAACCCCCCATAACTCAA TGGCCAATTGGAGGGGGATATTTCATTAGACAACAATACCCTTACTATGTTTTAAAAGCTTTTAAAAGTAAGGGTAACTA AAGTAGTTTTGTTTTAAAATCCCTCCTGTCCCCTCATGAACCTAACAAGAAAGGCGTTGTTCCCCTCCAGATTGATGATT AGGACCACAATTTTCATCACATCTAAATCATTCCCCTTTTTTCAATTTCTATTGTAATTCAGCTTCTATTAATCTTTTGA AACCTCCTTTTTTGATTTTACTCTCTGTCTCATTGCTACTGCCTTCACTCCTGTTGGATACTTCACTGCTCACCCCATTG TTCTTAGAGTTTTGCTCTTCAGATACAGAGCGAGTACCGGCATAACTCTTATAAGAGTTGCTGAGTTTACTACTAGAAAG AATACTCATTTACCAATTAATGCTTTCTTCATCATTGTACAAAGAGAAAGAGGTTCATATAGCTTCACCTTAGACCCTAT ATCTTCTCTCAACCCATTCAATAACACTTCCATTAGATAATCTTCAACTAATCCAGTTTCAGCCCCTTCATACCTTTCAA TATTGCTTGATAAATTCTGCTAGTGACCCACTTTATTTCAGCCTTAGCAAAGCTGCTAACAGATTTTGTGCAATTTGGGG CTGAAATCTCACCAAGATTGCTTTCTGAAATTCCTCTCAATCAATTATTGAATTGCACCTTTCCAACCATTGAAACCAGC TTAAAGCATCACCATCCAATGCCATAAATTCAGCTTCCATTCTCTTCCTCCAACACCCCCTCAATGTGAAATACCTGTTC ATTTTATGAATCCAGCCACATGCATCTTCACCAGAAAAAATAGGCATCTCTAATTTCCTCCACTTCCCTATCTCATCGCA TGTTGTTTGATCAAAATCACCATTTTGCAGTTTGTCTCGAGTTTCCCTCATAACTACTTATTAAGTGGTTTATTCAGCTA GTTTCATCTGATTACAACAGAAATTGACAGAAATGACCCATCCCTTACTAAGAGTTATGATCCCCCTACTATTCTTTTAT TTCTCCTCTCATATACATACATGCTTAATAGGGGGTCGACCCCCATTCCTACCAGAAGACCACTTAAAAGGCTTCCAAGT TCCAAACTGTTTGAAATAGAACTCAGGAAGACTATGCGAGGCAGGGAGATGGTTTTCCAAAACTTGGCAAAATGGTAACT CAAATTGTAAAACCTCTGCTTCAAATACTTTATGTGGGAATAAGAGGTAAATTTTGACAGTTGGATCAAATCGTGCACTG TTAATATTAGAATATAATATCATGTGACTTTCTTAACTAGTTTTGTGAAAATTTGATATAATTATTCTTAAATTGGGTAA TGATTTACTCCTCTGAAACTAAAATGAAAGAGTCCTGTGACTGTAAAATTATTAGTATACCACACACCAACTTCTAATTA TTTAATGGTTCAAATATCTCAGTGTCATTCATATGCACTCTGACAGAAAAATTAAAATTGTGTCAGCAACATCTATCAAG TATTTGTAGTTGTGTGTTTTTAATTTTCTTTCCTGATTATAGAGACGCTGGTCGTAGAGTTCAGGGAATACCCTCAGTTT GGAACATGCAAGGGATGGTTAAAGCTACTTAGACATAATAATGGGGAACCAGGAATATATCATGGAGGAAGATATCATGG AGGAATTAGAAAGCTTCAGACTGAAGAGGAGATTGAAAAATGGATGAAGCATTTAAGTATTTAACTCATGATCGTATGAT AAGATTAAACCTCCTTTGGTCCAAGTTTATCGCCGGAAAAAGAAGAATTTCAGGTCTGGAACCACCTTGGGGGGTGGCGC AGCCACTACTGTGGCCATGGAGACTGCTGAGCAGCCAAAACAGCAGGGAGAGAGGGGAAATACGAATTTGGCAGATGGGT AGAGGCAGTTACCAGTCTGTAGTTATTAGGAGTTAGCCGTTATTAAGTGTGTAAGTTGGTTATTATGTGTGTATGTCAGT TTGTATTCAAAATAGAAACTGCACTATGCAGTTGTATAAATAATAGATGCAGCCTATTAGATGATTGTCCAGAAAATTAT AAGTGTGTGGTAGTATTGAGAGAACAGGCTCTCGAATTCCTGCTGTATTGTACTATTGCCAGTAGAGATTCTTCATCTCT GCAG
CDS sequence (LotjaGi1g1v0662800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGATCACATTGACAGATCTCTCTTGAATTTGCCTGAACCCATTCTGGATTGCATCCTCAAACTCCTCTCACC AATCGAGCTCATCAAAATGTCCATGGTGTGCACTTGTTTAAGGGATGCATGTCGAAGTGATCATTTGTGGGAAAACCACA TCAACCAGAAATGGGGTACAATCGTTGGTGATTTTGCTTTCAAAGAGTGGCAATGGCACTTAACAAAATTCAAGTCAGAA GAAGAAGAAGAAGAAGCCCTCTTGGATCAAAATTGCTCACTTGGGTCTTTCTGTGGGTCTTGTCCTTTGCCATGCACTGG CTCATATTTACAGGATTTTAATCAACTTAGGACCTTCTTGCCAAATAACTCCATGTTGGCTCTTTATTTCTCTCTACAGG GTGGCAAGTTTTGGTTTCCAGCTCAATTTTACCGGGGACCAAGGGTTCGAGACGCCTTATTTCGCTATGACTCCACAAGT CAAACCTTCACAGCAAGGGAACAGAGGGTGGGTGGGCGATGGTTGTTGTGGAAAGGTATCATGTGGGAAAGGCTGAGACT TTCCCCAGTTGCAACCCCTCCATGCTTTTGTCACGTCTCTGACTGTTTGGAAGACTTAAAGCCTGGTGATCATATTGAGA TCCAAGGCAAAAAAAAGAGTGACCCTCATTATGAATGGTTTTATGCTGTTATTGGTCACTTGGACTCATGTAATGAGAAC GAGGAGTACTGTTGCTGTCGTCATTCAGAGACGCTGGTCGTAGAGTTCAGGGAATACCCTCAGTTTGGAACATGCAAGGG ATGGTTAAAGCTACTTAGACATAATAATGGGGAACCAGGAATATATCATGGAGGAAGATATCATGGAGGAATTAGAAAGC TTCAGACTGAAGAGGAGATTGAAAAATGGATGAAGCATTTAAGTATTTAA
Protein sequence (LotjaGi1g1v0662800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDHIDRSLLNLPEPILDCILKLLSPIELIKMSMVCTCLRDACRSDHLWENHINQKWGTIVGDFAFKEWQWHLTKFKSE EEEEEALLDQNCSLGSFCGSCPLPCTGSYLQDFNQLRTFLPNNSMLALYFSLQGGKFWFPAQFYRGPRVRDALFRYDSTS QTFTAREQRVGGRWLLWKGIMWERLRLSPVATPPCFCHVSDCLEDLKPGDHIEIQGKKKSDPHYEWFYAVIGHLDSCNEN EEYCCCRHSETLVVEFREYPQFGTCKGWLKLLRHNNGEPGIYHGGRYHGGIRKLQTEEEIEKWMKHLSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 87 | 86 | 8.1E-8 | – | |
PANTHER | 7 | 307 | 301 | 3.0E-122 | – | |
PANTHER | 7 | 307 | 301 | 3.0E-122 | – | |
ProSiteProfiles | 7 | 53 | 47 | 12.703 | ||
Pfam | 9 | 54 | 46 | 2.3E-8 | ||
SUPERFAMILY | 9 | 66 | 58 | 1.1E-10 | ||
SMART | 13 | 53 | 41 | 6.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0662800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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