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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0664100 |
| Transcript ID | LotjaGi1g1v0664100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding EF hand family protein; TAIR: AT2G41200.1 transmembrane protein; Swiss-Prot: sp|O75182|SIN3B_HUMAN Paired amphipathic helix protein Sin3b; TrEMBL-Plants: tr|Q2HW51|Q2HW51_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0664100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122577250..122579112) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTATTGCAGCTTTTATTCTCTATAAAGATCTTCTAATTTTGTTTCTTTGAAGCAAGTGCCATCTAACTCATTGTCAC AAGTCATCACAGCTCTATCAAATCAAAGGCAAATATAAAGATGGGCCAATCTCTGAAGAAACTAGCACCTGGTTCAATAT CTAGCACCCTTTTGCTATTCTTCAATCTTATATCAGCTATGAATCATGACTGTTATTAGTAATTACTAATAGCAGGGCCA TCTTTTTTTTTACTGTTTTCTGGTATGCATAGTCATGCTTCTTACATCAAATTTGGGGATGCAGGAACTGATGAAAAGAA GGTCAATGAACTTAACACAATTTTAGATAAATTCTATGATGACAACATCAAAGACGCCACAATCAACTTCCCAGAATTCT ACCGAGGAGTATGCGAGATAGTCGAGTACTTACCATTTTCAAATTAAAATCTTGCCCAATTAATTTACTAGTTAGCATAT GTATAAAGTGACATTTTTTTTTTGTTTAATTTGCACCATCCTTGACACTTTTTTTATCACAATTTTTTTTATGCTTTGTC AGGGAACTGAATGAAAAGCGTGGAAACACCCAGTTCAAACTCCCAGAGACTGAGGTTCTGAAGAAGGCATACAATGTAAG ACCATATGTATCTCTTTTTTTTAACAAGAATTATCTCACAATAATGTTTCTTGTAAACTTTTTTTGTGTGTAGCATCTAA AGATAGGAAAAGAAGAGAGGAAATTAATAAATATGATATGTGGTGTGATAGGAAGAAAGAGATAATAAAGAAAAATAGTG TACATAGATAGATATTGTTATACAATTGGTATACATGAACGTGTACCACACTTTCAAGAGATATTTAGCATAACGAGAAA AAATAGATAAGAAAGCGAAAATTTACCATATTCAATAAAATCAATACTGCTTTAGTGTAAAAATTTGAAGAGGGAAGAAA TACAACATTTAAATATTATATTATTAAGGATTTTTTTCTCATTAGAGTTCGACCGTTACATTATAAAAGTATGTGGTTAT ATCTTTGCCTAAGCACATGTTTGGAATTCCTTTCACAATTTTTTCTAACGCCAATCTGTAAACAACTTTTGTGTGTCATA ATTAATTTTGGGAAAATAGAAGTTAATTCAAACATGTTCCTATAAGATAAGGTGGTTGATAAATGTTTCACCCTTAGTTG CTTGTTCACATGTTTGGTTTTGTCAATTTGAGAACTTTAGCAAATCAAACATAATATGTGTACAATTGATGGTGTTGTGT TTGAATGTTGCACACACATGCAGGAAAATCATAAAGGTAAAGACAAGGCACTGAAAAAATCAGAATTCAAGGAGATCATG AAAGAGATGGTGAAGGAATCAGGATTCACTGGTATAGGAGCAAAGGAAGCACTCATGTACATCTTTGGTGTTCCTGTGGC TGCTCTGTTTGTTAAGCAGAGAGTGATGCCTCATGCAATTTCTAATGAGATTTTCATTCCAGGGGTTACTTCAGTCACTG TCTTCATTCTAGCTGCTCTTAACAAGATTTGATATATTATGACCAACCAATAATTATTGTTTGTGGCCTTACTTTGCACT TTTACAATTAATGCTAAAATTTTAACACATTGATATTTATATGCAAGACCATCTCCAATTTTCAAAAGCCAATCTTTGAA ACATAAAGATTGTAATGATTCGCGCGTATTTTGAAGTTACAACACAATCAAATTTTATAAGAACCTAGACCACATTGAAA TATATGAGTCCTTCCAAATTGTGAGCTAGCGGATGCTCCTAATCTTTCGCGGTGTTGCACGGTCCTAAAGGATCTTCTAG TACTGTGGTGAGTTATTGACATG
CDS sequence (LotjaGi1g1v0664100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCCAATCTCTGAAGAAACTAGCACCTGGAACTGATGAAAAGAAGGTCAATGAACTTAACACAATTTTAGATAAATT CTATGATGACAACATCAAAGACGCCACAATCAACTTCCCAGAATTCTACCGAGGAGTATGCGAGATAGTCGAGGAACTGA ATGAAAAGCGTGGAAACACCCAGTTCAAACTCCCAGAGACTGAGGTTCTGAAGAAGGCATACAATGAAAATCATAAAGGT AAAGACAAGGCACTGAAAAAATCAGAATTCAAGGAGATCATGAAAGAGATGGTGAAGGAATCAGGATTCACTGGTATAGG AGCAAAGGAAGCACTCATGTACATCTTTGGTGTTCCTGTGGCTGCTCTGTTTGTTAAGCAGAGAGTGATGCCTCATGCAA TTTCTAATGAGATTTTCATTCCAGGGGTTACTTCAGTCACTGTCTTCATTCTAGCTGCTCTTAACAAGATTTGA
Protein sequence (LotjaGi1g1v0664100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQSLKKLAPGTDEKKVNELNTILDKFYDDNIKDATINFPEFYRGVCEIVEELNEKRGNTQFKLPETEVLKKAYNENHKG KDKALKKSEFKEIMKEMVKESGFTGIGAKEALMYIFGVPVAALFVKQRVMPHAISNEIFIPGVTSVTVFILAALNKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 102 | 102 | - | – | |
| PANTHER | 1 | 157 | 157 | 1.6E-62 | – | |
| PANTHER | 1 | 157 | 157 | 1.6E-62 | – | |
| SUPERFAMILY | 19 | 97 | 79 | 4.2E-5 | ||
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 103 | 126 | 24 | - | – | |
| Phobius | 127 | 137 | 11 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 138 | 154 | 17 | - | – | |
| Phobius | 155 | 157 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0664100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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