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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0666300 |
| Transcript ID | LotjaGi1g1v0666300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Response regulator protein; TAIR: AT3G57040.1 response regulator 9; Swiss-Prot: sp|O80366|ARR9_ARATH Two-component response regulator ARR9; TrEMBL-Plants: tr|I3S6C0|I3S6C0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0666300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122848693..122852242) extracted from Lotus japonicus Gifu genome v1.2.
TCAGATGTCGACTATTTTAGACTTAGAATTTAGTGACACTTAAAATTCTTCATCCCTTTTCTTAAGATTAGTGCGGAAAT TAAACTCGAAAACTCTTTTTACACACTCAATTTGTGTTGCCAATTGATCTACCAAATTAGTATTCCTTTCCTCTTTTGCT TTCATCCTACTTTCTATTTTCACTGTATTTTCTCACTCACTCATGTTCATATGTACATATATAAATAAAGGTCACCTCTT CTGTCCACCCTCAAAACAATCTAAAAAAATATTCACTTAGATTTATTTTCTTTATTTTATTCATTCATTATGTGTCCCTA GTCTTTATCTTATAATTTTGCATTGCTTGCCCTGTAATTCAAGATCAACTTGGAAAATTTGCAAGATTTGGGATGAAATC TGGTCGGATCTTGCTTTGTGGGTTGGGGATTTTGGTGGGTCTTATTTCAATACTTAGCCCTTCTTCCATTCTCATCTTTC TCCCATAAAGGAAAAAACTCATAAACAAAAAGTCAGAGGAGTAACAAAGCAAAGAGAAAAAAGGGAAGAGAAAGAAGGAA CACCATATTACAATCTACACACACCCTCTTTCCATTTCATTGCCTCTTCACTTCATCTTCAATAGTTCAATCCATTCACC TTCTAAAGGGTCTATTTTGCATCCTGAGCTAGAGGAAATGGGGATGGCTGCTGCAGAGTCACAGTACCATGTTCTGGCTG TTGATGACAGCATCATAGATAGAAAGCTCATTGAGAGGCTTCTTAAAACCTCTTCCTATCAAGGTACTTTCTTGCAGGCC TAACAGAAGAAAATTTGATGGAATTTTTTTTGATTTTTTCCTTTCTTACATTAGTTCTACTATGGTATCTGAACAGCATG AACTCTGTTTTCTCAATGACAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGTTTGCATGAAAATGA AGAAAGTAACCCAAATACACCATCTATTTCACCTAACAACCATCAGGTATGTTGTTGATTTTTTTTTTTTGCTTAAAATG TATAAAGATGTTCAAATTTTTAATTACCTTGTTGCAATAAAAATTTCTTTTTAGAACTATATAGATCAGTTTCTTTTTCT GGGGTTCTGAAAATTCCTTGGTTTTTTGTGTCCTTGACAGGAAGTGGAGGTGAATCTTGTTATAACAGACTACTGTATGC CTGGAATGACAGGCTATGATTTGCTTAAAAAAATCAAGGTATGCTTTGGTTTCTATTCCTGTCTCATCTATCTTTTAACC AATTATATTCTCCACTTTTCTCAGTCTTTCTGGCTAAGTTTGTTTTTCCTTTTTTAAAACAATGGCCCATGTAAAAAACT TTTCCAGTTTCAAATATATGCATTGAATTTGATTCCAATTTTACTACTTCTGAATATTGTCAACTAGGACCAGTTCCATT ACTTACCTGAAAATACCAAAGCATAAACTCCTGGAATAATTTCCCTGTATGCTTTTTCAATTTTCCACCCAAAACAAATC TGGTTAATTTGTTATAGAAAGATTTTCTTTCCAAAAAGGGACCTACTTTGATTCAAGTGAAAAAAAAAGTTTGAGAATCT CTGAAAATTATGTGCTCACTTATTCCACCTGGAAGTCTGGAACCAAAGACTCAAAAAATTTATAGGATTCTCTCTGATAT TTCAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAACAGGTAA TGGAGGAAACAATTTCAGTATTTTATTTTATCTTTTTATTTTTCAAATAAAAAAAAATTAGGTAAAATTCTGATGAATCT GTCAAAAACCAAAACTATTTCAGATGCTTGGAGGAAGGAGCAGAGGAATTTTTCTTGAAGCCTGTGAGGCAATCAGATTT GGTTAGACTCAAATCCCACATCAAGAAGACCAATTTGAAAAAAATTCAAAATCAAGATGTAGCAGATAAGCTTGAAATTC CAGAAGTTCAACAGCATCATCATCATCTTCCACAGCAAATCCAAAATGATCAGCAACAAGCACCAAAGTTCCAATATCTG CAGCCAGAGTCAGAGGTAGATCAACAGCAACAAGCACTACAACAAGCCAACAATAACAAGAGGAAGACCATGGAACAAGC CAACAGTACACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCTACTGTGGTATGATGATAAATCATTGCAA AATAAAATTTCTTGAATTTCAAAATGTAATTCTGAGTTAACTTTTTTTCTTTTTTAATTTTTTAAGTAAATTAACTTCAG CAGTGGTTGATATAGGCTCTATAGTGTAATAGAGAGTTGTTTCCTGTACACATTTTGTGGAAATATTTCCTTCCAATTTT GCTTTTCCAAACAGATATGAAAAAGAAAAAAAATTGAATGAGTAAGAACTCAGGTGGTAAATTTCCGGGCTAAATGAGTT TTGCACTTTGCTACTACCCTTCTTAACCATCACTCTTGCTAACAACATCCTGAAAAACACTTTTGATTCTTTCAAATCAT GATCCATGTCTGAAGTAAAAAAATTCCAGTGCATAAACCATCAAGTTTTCATAGTACTATAATGTTGTATTTCATTAACA AAATGCAATATTCCTACAGCAAATTATGTGCAAATGAAAAGAGGTACTTTTACTTCAATCAAGTGTGTAAAAGCTGTTTG TAGCTCTAAGTAGTAAGCTAACTGAATGAAAACTGATAACAGAAATGCAAATAACAGAAAGGGAAAGAGCTAACTTGCTT AACTAACTAGCTCTAGCTCTAACACTCTAACAGGATACAACTTCAACTAACTAAAGCTAAACCAACTCAATTAGTTTTTC ATCCCCCTCAAGTTGAAGATGGGTGAAATATATCAATCATATTCAAGTTGGAAACCAAACTATTAAGTCTTCCCGGTAAT AAAGCCTTCGTGAATATGTCTGCAGTTTGATTTTGGGAAGCAAGTGGAAGAAGTCTCATTAGCCCTTCTTGCATATTCTG CCTCACAATGTGGCTATCAATTTCCAAATGCTTTGTCCTCTCATACGGGATTTGCAGCAATATGCAAGGCACTGTTATTG TCACAATAAAGCGCCACTTGCTTCACATCAGTGAAACCAAGATCCTGCAACAAAAAGGTTAACCATTGGAGTTCATAGGT GACACTTGCTAAGGCTCTCTACTATGCTTTAGCACAAGAACAAACAACTGTGTGTTTCTTCTTGGCTCTCCAGAAATAGG TGAGGATCCTAAACAGAAGCAATGTCTGATTGATGTACGAGTATCCTTACAAGTTACATCCTCCCAAATCAGTATCAGAA AATCCCCATTAGCTGCAAAGAAGAATCATGAGAAAAGAATATAGTCAATATACCTTTGAATGGACTTCATTTGAGATACC TTTAGATCCTATGTGCTCCATGATGATGCACCATAGTTGGCTTAGCAAGAACTTGGTTTAATTGTAGTGAGGATGTAAGG AACAGAACCTCATATTTTTTTTATTCCAAT
CDS sequence (LotjaGi1g1v0666300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATGGCTGCTGCAGAGTCACAGTACCATGTTCTGGCTGTTGATGACAGCATCATAGATAGAAAGCTCATTGAGAG GCTTCTTAAAACCTCTTCCTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGTTTGCATGAAA ATGAAGAAAGTAACCCAAATACACCATCTATTTCACCTAACAACCATCAGGAAGTGGAGGTGAATCTTGTTATAACAGAC TACTGTATGCCTGGAATGACAGGCTATGATTTGCTTAAAAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGT GATTATGTCATCTGAGAATGTGCCTTCAAGGATTAACAGATGCTTGGAGGAAGGAGCAGAGGAATTTTTCTTGAAGCCTG TGAGGCAATCAGATTTGGTTAGACTCAAATCCCACATCAAGAAGACCAATTTGAAAAAAATTCAAAATCAAGATGTAGCA GATAAGCTTGAAATTCCAGAAGTTCAACAGCATCATCATCATCTTCCACAGCAAATCCAAAATGATCAGCAACAAGCACC AAAGTTCCAATATCTGCAGCCAGAGTCAGAGGTAGATCAACAGCAACAAGCACTACAACAAGCCAACAATAACAAGAGGA AGACCATGGAACAAGCCAACAGTACACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCTACTGTGGTATGA
Protein sequence (LotjaGi1g1v0666300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMAAAESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHENEESNPNTPSISPNNHQEVEVNLVITD YCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRQSDLVRLKSHIKKTNLKKIQNQDVA DKLEIPEVQQHHHHLPQQIQNDQQQAPKFQYLQPESEVDQQQQALQQANNNKRKTMEQANSTPETDRTRPRYSGIATVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 235 | 235 | 5.8E-93 | – | |
| PANTHER | 1 | 235 | 235 | 5.8E-93 | – | |
| Gene3D | 5 | 158 | 154 | 2.3E-33 | – | |
| SUPERFAMILY | 9 | 148 | 140 | 3.13E-28 | ||
| SMART | 10 | 143 | 134 | 4.0E-19 | ||
| ProSiteProfiles | 11 | 147 | 137 | 36.265 | ||
| Pfam | 12 | 140 | 129 | 2.1E-20 | ||
| CDD | 13 | 146 | 134 | 1.2016E-26 | ||
| MobiDBLite | 194 | 239 | 46 | - | – | |
| MobiDBLite | 194 | 228 | 35 | - | – | |
| Coils | 198 | 222 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphorelay signal transduction system | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. |
Expression pattern of LotjaGi1g1v0666300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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