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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671100 |
| Transcript ID | LotjaGi1g1v0671100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-splicing endonuclease subunit Sen54; TAIR: AT3G57360.1 tRNA-splicing endonuclease subunit; Swiss-Prot: sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54; TrEMBL-Plants: tr|A0A151TTW2|A0A151TTW2_CAJCA tRNA-splicing endonuclease subunit Sen54; Found in the gene: LotjaGi1g1v0671100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123472857..123476902) extracted from Lotus japonicus Gifu genome v1.2.
CAGGGGCGGACCCACAGCCAAGTCAGGGGTTCAGATGAACCTTCTGAAAAAAAAAAAAAAAACTTACCCCTGTTATGTTT TTTTTTGAACCCCTGAGAAATTTAATTTGCACCCAGACCCCACTTACTCCTCTCTCTCTCACACACACTCACAGACTCAC CCTCTCACGATTCACGCTCACCACGCCCTCACCCTCTCGGATTCTCACTTAGGTCATCAAGATTCAAGCACACACGCAGG GCACGGCGCACCACCACCACGCCACCACCGTCCACCAGTCCAGCCGCCCCTATGCGGCTCTACCCTAGGTATGGCCCCTC ATAGAACCAGATGCACTCCTGGATGTGTTCTGTTGTTGATTTTTCTAGGTTTCTTCTGGTTATTTTATGGGTTTACAGGT GCTGGAGTTGTTGGGTTTCAATCTAGGATGGTGGCTCTGGGATTTGCAGATCTGGATGGTTACTGTTATGGGTGTATTTG GGAGGTTTGGGTTTGAAGTAGAAGGTTAATTCATGGGGCTACTGGTGGCTCATTGGGGTAGCTATGGGGGTTGTGGTTTT TTTTGCTGCAGTTGCAAAACCACAGCGAAGCACCTGTAATTGATGAATTACTTTGTCAAATGCATCCCTTCATTTTTTTC AATGCATCATCATGTGTTAAATAAATTTTTAGATTTGATTTGAATTGTTCAAGAACAATTTCAAGTTTCAACGATGGGTG ATGAAAAATTGTGGACAGTGGGTGGTTGAATTTGGCTTTTTAATTCAGCGGGTGAAATTGTGGGTTGCATTCTTCCATAA TTAATTAGATAATTTCAAGGGTGATGGTATTTTCAAGGGTGGCAATTGTAATCCAGCTGAAGTATTTGAGAAGAGTAAAT TGAGGGCATGGGAGTGGTTGTGGGCCAGGAATAAGGATTTCCTACATGCTCTTGGAGAATGGTATAATGATCCACTTGCG TGTATTGCTGATATGAGTTGAGGATGATATTGCTGTAGCAGGAAGGAAAATTTGAATCTGATTAATGAGTGATATGGTTT TGATGTTATTGGAAAGGTCAAAGGAGTAGTAAGGTAAGGTATGAATGGATGCAGCGTGTTTAAATGCTGGGAGGCTCTGT CATCTAAATTTCAATGGGCATGGTGCGGACTAGAAGTGCATCTTGGAATTCATGAAGCTTTGTTATACATTGTTGGGATT CATTAGCGATATTGGGGGCATGGTCTTGACAGCAATATGATATGTGGCTTTTAATTGTGAGGATCTATGTGAGAAGAAGG TTGATAGTTTTGCAGGGTTCATTCTTGGGCATTTGGCAGAGTTGCGTTAGCTTAATTGGTTGGTGAATTTCCATAGCTGG AATTGCTGGTGTTAGGAATTAGCTTTGTCATTTGAAGATGGCCTAGACTATAGTGCTTCTTGGAGATATCTCTTTGGCTT AAGTAATTTAGTACTCTTTTTAGTGGTGTATAATAAATCTGTCATATTCTGGTTTATTGTAGTGGGATTGATTAATTTAA TTTCACTTTTGCTGACAAAAAAAAAAGTGTGCATGTAGTCTTCTTTTAATTATATTTTTATCGATTTGCTCATTTGAAAA TTTTTAACCCTAACCCCGGGGTCCTGGATCCGCCACTGAATGTTTCCCTTTGCATTTGATTATGTTCTGTTTGAGTAACA ACAAACGAGGTTTTAACCCTATTGTTTTATATTACAGCTTTTGATCCATGGAAGATAGTGATGATGATGAGGTTTATTTG GAAACTGCAAGTGATGAAGAGGAGCTTGGCTTTTCATCTGCTTCCATGCCCAAGTTGCAGTTCAGGTCAAGTGTAAATTA GTTGCTTAGTAGTGTGCTTTAGTGTTGTTTCTGAATTATGAAATGAAGGTTTTGAATTTTGTTTGCCAGGAATGTGAAAT CCAAATGCAGATGGGATGAAGAGATGGGAATGGCTGAAGTCATTGAGAAGAGTGGGAAAATGTGGGTAACAACTGGAATA GTTCGCGGTGGCAAGACTTATTCTTCAATTGAAGAGACTTTGTAGGTGATATACCATTTTTTTATATATGCCTTCTGTTG TGATGTTTAGAAGTAGGATATTGTCACAAATCTTAAAGCCATAGCTTTATGTAAATGATGAATATTTAGTTATTTGATAC GCTTACGTGAAGAAAAAAAGTATGTATTGAGATTTCATGATGTTGTTAGAAGAGAAATTAGTGGAAAAGGGAATTTGTGA TGATACCCTTTTGCTAGGATCAAATGTTATGAAAAATGTGCTTATGTAAATTTTAATTTGGCAGGTATCTCATGGAACTA GGGGCCTTAGATCTCTTTGATAATAGTGATAGAAGTATATCTCTAATAGAAATGTATGAAAAGGTTGCTGGCGGGAAGAG TGGATGTTGTTGGGAGCTGTTTGAGGTTTACAGGCACCTCAAGTCTCTTGGCTACATAATTAGGCGGCATGATGTTGCTT GGAGTTTGAAGAGTGTTAGAAGTTCTCATAATCCTATTGCTCTTGAAGCCACAGAAGAAAGCAGTCAACTAGAAGAAATG GGTTCCAAAGTTGAGCTTTGTATCAATAAGTTATTTGGTGAGTTGAAGATTAGTGATGTGAAGCCAGATTTTGATATTTA TCTTCCAAACAGCAGGTTTAGAAAGTCTTCTCCTGGTGATCCGAATTTTTTGCTGTACTTGTCCAGGTAATTACAAAGTC TCTGTTTTTGTAGTATGATTACTTTAGATTCAGAAATTTAATTAGTTAGTGATCACTAGATATGGTTACCTGAAGATTTA TGAGTAATCAAGAACATGAATCAAATAAATTCAAGCATATTTTCTCACAGTAAATAGTAGGAATTGATGAAGGTTCTTGT AGTTCTATGTTCTCTGATAGGATTTTAAGGTGATGACCTAGAAAGCTCTTACTACAATAGGATTCAATTTTCTCTCTTAA AATAACTTCTGACTGATAAATCTGCTACATTACATAGCGTCTCGAGAAATAGACATTTCAGAGCAATATCTTTAATTCCT GGGGTTACAAGAGATAGGAATAAGCTAGTAAAGTTTATCTATTAGGACCACATAAGCACTTGTTACCGTTACTATTTCAA AATTGATTTAAAAAAACACACTTAGCTACACAATTTTGTCCTTAGCCCTTATTTTCCTTTATTTATTTCCCTTTTTTTCT GGTTTTATGACATCCATTAAATAAGTTATTATATGTATCATCATTAGGAGTAATCCACCATCTAGAGCAGAAATTGAAGC CCTTGAGAGACAATGTGATGGCATTCCTTTGAAAATCTGCCTGGTCACAGAGGGAAGGGTCAGTTTCTTTTCCTTTGACA AGGTTGAACTTCCTGTTCTACCATGAACTTTTGGCAACAAGCCTACATTTTCACTCTGGGCCTAAAGGGAAAGATGGCAA AGATAAGAGAATACCTATGTAGGATCCATTGATGTGCAAAAAAGCTTCAGAAGCTGTACCTTGTGCTGCAAAGGCTCAGA TCACAACCAGCGCTTGATTTTGGTCAATCTGATCATGATTGATGCAGGCCCATGTAACTGTTGATCATATATATGCTGAA GTTTATAATGTCTTGAGTTGGATGGATGGGGATTTATTATTAGAGCAAAAACAAGGATACTGCATATGTTCAATCTATTA TTCTAACTTGTTGTGTTAATTTCATTAACAGTCTGATCTGCTTTCTATGCAGTTACTTTAGAAGACCCAAATTCTATAAT CACTTGTTCTTTTTTGGTTTGCTATGTAACCTTTGTAGAAGAAATTGGTAAACTATGGATGAATTGGTGCTTCCTCCTCT TTAGACAGTTGTAGTCCATATTGAATATGGTTTTGTATGCATGATTTTACTAATGCACACAACATTTTTCTAGCTTTTCG GGAATGGAACATCTTATGAAAAAAGAAGGGTTAAATTACTTCCAAGGTTTATATGGATTTATTGAACTTTTATACAGGTT TTATAGGTTAGAAGTTTTTTTTTATAAAATAAAGTCCCAATACGTC
CDS sequence (LotjaGi1g1v0671100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTAGGGGCCTTAGATCTCTTTGATAATAGTGATAGAAGTATATCTCTAATAGAAATGTATGAAAAGGTTGCTGG CGGGAAGAGTGGATGTTGTTGGGAGCTGTTTGAGGTTTACAGGCACCTCAAGTCTCTTGGCTACATAATTAGGCGGCATG ATGTTGCTTGGAGTTTGAAGAGTGTTAGAAGTTCTCATAATCCTATTGCTCTTGAAGCCACAGAAGAAAGCAGTCAACTA GAAGAAATGGGTTCCAAAGTTGAGCTTTGTATCAATAAGTTATTTGGTGAGTTGAAGATTAGTGATGTGAAGCCAGATTT TGATATTTATCTTCCAAACAGCAGGTTTAGAAAGTCTTCTCCTGGTGATCCGAATTTTTTGCTGTACTTGTCCAGGAGTA ATCCACCATCTAGAGCAGAAATTGAAGCCCTTGAGAGACAATGTGATGGCATTCCTTTGAAAATCTGCCTGGTCACAGAG GGAAGGGTCAGTTTCTTTTCCTTTGACAAGGTTGAACTTCCTGTTCTACCATGA
Protein sequence (LotjaGi1g1v0671100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELGALDLFDNSDRSISLIEMYEKVAGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQL EEMGSKVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEALERQCDGIPLKICLVTE GRVSFFSFDKVELPVLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 175 | 175 | 2.5E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0671100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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