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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671100 |
| Transcript ID | LotjaGi1g1v0671100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-splicing endonuclease subunit; TAIR: AT3G57360.1 tRNA-splicing endonuclease subunit; Swiss-Prot: sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54; TrEMBL-Plants: tr|A0A151TTW2|A0A151TTW2_CAJCA tRNA-splicing endonuclease subunit Sen54; Found in the gene: LotjaGi1g1v0671100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123472967..123477053) extracted from Lotus japonicus Gifu genome v1.2.
ACCCAGACCCCACTTACTCCTCTCTCTCTCACACACACTCACAGACTCACCCTCTCACGATTCACGCTCACCACGCCCTC ACCCTCTCGGATTCTCACTTAGGTCATCAAGATTCAAGCACACACGCAGGGCACGGCGCACCACCACCACGCCACCACCG TCCACCAGTCCAGCCGCCCCTATGCGGCTCTACCCTAGGTATGGCCCCTCATAGAACCAGATGCACTCCTGGATGTGTTC TGTTGTTGATTTTTCTAGGTTTCTTCTGGTTATTTTATGGGTTTACAGGTGCTGGAGTTGTTGGGTTTCAATCTAGGATG GTGGCTCTGGGATTTGCAGATCTGGATGGTTACTGTTATGGGTGTATTTGGGAGGTTTGGGTTTGAAGTAGAAGGTTAAT TCATGGGGCTACTGGTGGCTCATTGGGGTAGCTATGGGGGTTGTGGTTTTTTTTGCTGCAGTTGCAAAACCACAGCGAAG CACCTGTAATTGATGAATTACTTTGTCAAATGCATCCCTTCATTTTTTTCAATGCATCATCATGTGTTAAATAAATTTTT AGATTTGATTTGAATTGTTCAAGAACAATTTCAAGTTTCAACGATGGGTGATGAAAAATTGTGGACAGTGGGTGGTTGAA TTTGGCTTTTTAATTCAGCGGGTGAAATTGTGGGTTGCATTCTTCCATAATTAATTAGATAATTTCAAGGGTGATGGTAT TTTCAAGGGTGGCAATTGTAATCCAGCTGAAGTATTTGAGAAGAGTAAATTGAGGGCATGGGAGTGGTTGTGGGCCAGGA ATAAGGATTTCCTACATGCTCTTGGAGAATGGTATAATGATCCACTTGCGTGTATTGCTGATATGAGTTGAGGATGATAT TGCTGTAGCAGGAAGGAAAATTTGAATCTGATTAATGAGTGATATGGTTTTGATGTTATTGGAAAGGTCAAAGGAGTAGT AAGGTAAGGTATGAATGGATGCAGCGTGTTTAAATGCTGGGAGGCTCTGTCATCTAAATTTCAATGGGCATGGTGCGGAC TAGAAGTGCATCTTGGAATTCATGAAGCTTTGTTATACATTGTTGGGATTCATTAGCGATATTGGGGGCATGGTCTTGAC AGCAATATGATATGTGGCTTTTAATTGTGAGGATCTATGTGAGAAGAAGGTTGATAGTTTTGCAGGGTTCATTCTTGGGC ATTTGGCAGAGTTGCGTTAGCTTAATTGGTTGGTGAATTTCCATAGCTGGAATTGCTGGTGTTAGGAATTAGCTTTGTCA TTTGAAGATGGCCTAGACTATAGTGCTTCTTGGAGATATCTCTTTGGCTTAAGTAATTTAGTACTCTTTTTAGTGGTGTA TAATAAATCTGTCATATTCTGGTTTATTGTAGTGGGATTGATTAATTTAATTTCACTTTTGCTGACAAAAAAAAAAGTGT GCATGTAGTCTTCTTTTAATTATATTTTTATCGATTTGCTCATTTGAAAATTTTTAACCCTAACCCCGGGGTCCTGGATC CGCCACTGAATGTTTCCCTTTGCATTTGATTATGTTCTGTTTGAGTAACAACAAACGAGGTTTTAACCCTATTGTTTTAT ATTACAGCTTTTGATCCATGGAAGATAGTGATGATGATGAGGTTTATTTGGAAACTGCAAGTGATGAAGAGGAGCTTGGC TTTTCATCTGCTTCCATGCCCAAGTTGCAGTTCAGGTCAAGTGTAAATTAGTTGCTTAGTAGTGTGCTTTAGTGTTGTTT CTGAATTATGAAATGAAGGTTTTGAATTTTGTTTGCCAGGAATGTGAAATCCAAATGCAGATGGGATGAAGAGATGGGAA TGGCTGAAGTCATTGAGAAGAGTGGGAAAATGTGGGTAACAACTGGAATAGTTCGCGGTGGCAAGACTTATTCTTCAATT GAAGAGACTTTGTAGGTGATATACCATTTTTTTATATATGCCTTCTGTTGTGATGTTTAGAAGTAGGATATTGTCACAAA TCTTAAAGCCATAGCTTTATGTAAATGATGAATATTTAGTTATTTGATACGCTTACGTGAAGAAAAAAAGTATGTATTGA GATTTCATGATGTTGTTAGAAGAGAAATTAGTGGAAAAGGGAATTTGTGATGATACCCTTTTGCTAGGATCAAATGTTAT GAAAAATGTGCTTATGTAAATTTTAATTTGGCAGGTATCTCATGGAACTAGGGGCCTTAGATCTCTTTGATAATAGTGAT AGAAGTATATCTCTAATAGAAATGTATGAAAAGGTTGCTGGCGGGAAGAGTGGATGTTGTTGGGAGCTGTTTGAGGTTTA CAGGCACCTCAAGTCTCTTGGCTACATAATTAGGCGGCATGATGTTGCTTGGAGTTTGAAGAGTGTTAGAAGTTCTCATA ATCCTATTGCTCTTGAAGCCACAGAAGAAAGCAGTCAACTAGAAGAAATGGGTTCCAAAGTTGAGCTTTGTATCAATAAG TTATTTGGTGAGTTGAAGATTAGTGATGTGAAGCCAGATTTTGATATTTATCTTCCAAACAGCAGGTTTAGAAAGTCTTC TCCTGGTGATCCGAATTTTTTGCTGTACTTGTCCAGGTAATTACAAAGTCTCTGTTTTTGTAGTATGATTACTTTAGATT CAGAAATTTAATTAGTTAGTGATCACTAGATATGGTTACCTGAAGATTTATGAGTAATCAAGAACATGAATCAAATAAAT TCAAGCATATTTTCTCACAGTAAATAGTAGGAATTGATGAAGGTTCTTGTAGTTCTATGTTCTCTGATAGGATTTTAAGG TGATGACCTAGAAAGCTCTTACTACAATAGGATTCAATTTTCTCTCTTAAAATAACTTCTGACTGATAAATCTGCTACAT TACATAGCGTCTCGAGAAATAGACATTTCAGAGCAATATCTTTAATTCCTGGGGTTACAAGAGATAGGAATAAGCTAGTA AAGTTTATCTATTAGGACCACATAAGCACTTGTTACCGTTACTATTTCAAAATTGATTTAAAAAAACACACTTAGCTACA CAATTTTGTCCTTAGCCCTTATTTTCCTTTATTTATTTCCCTTTTTTTCTGGTTTTATGACATCCATTAAATAAGTTATT ATATGTATCATCATTAGGAGTAATCCACCATCTAGAGCAGAAATTGAAGCCCTTGAGAGACAATGTGATGGCATTCCTTT GAAAATCTGCCTGGTCACAGAGGGAAGGGTCAGTTTCTTTTCCTTTGACAAGGTTGAACTTCCTGTTCTACCATGAACTT TTGGCAACAAGCCTACATTTTCACTCTGGGCCTAAAGGGAAAGATGGCAAAGATAAGAGAATACCTATGTAGGATCCATT GATGTGCAAAAAAGCTTCAGAAGCTGTACCTTGTGCTGCAAAGGCTCAGATCACAACCAGCGCTTGATTTTGGTCAATCT GATCATGATTGATGCAGGCCCATGTAACTGTTGATCATATATATGCTGAAGTTTATAATGTCTTGAGTTGGATGGATGGG GATTTATTATTAGAGCAAAAACAAGGATACTGCATATGTTCAATCTATTATTCTAACTTGTTGTGTTAATTTCATTAACA GTCTGATCTGCTTTCTATGCAGTTACTTTAGAAGACCCAAATTCTATAATCACTTGTTCTTTTTTGGTTTGCTATGTAAC CTTTGTAGAAGAAATTGGTAAACTATGGATGAATTGGTGCTTCCTCCTCTTTAGACAGTTGTAGTCCATATTGAATATGG TTTTGTATGCATGATTTTACTAATGCACACAACATTTTTCTAGCTTTTCGGGAATGGAACATCTTATGAAAAAAGAAGGG TTAAATTACTTCCAAGGTTTATATGGATTTATTGAACTTTTATACAGGTTTTATAGGTTAGAAGTTTTTTTTTATAAAAT AAAGTCCCAATACGTCTAAAAATTATATAACAGTTGCCTGTTATTTGATTGTATTCAGACTCCATTAATTTATGTTGGGT TAATGGTTAAATTTGTCCATGTTTGTCACCTTATTTCTTTTCCGTTCGTAGCTGGAAAATAGTTGCCTATAACCCCTCCA TTTGCAC
CDS sequence (LotjaGi1g1v0671100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATAGTGATGATGATGAGGTTTATTTGGAAACTGCAAGTGATGAAGAGGAGCTTGGCTTTTCATCTGCTTCCAT GCCCAAGTTGCAGTTCAGGAATGTGAAATCCAAATGCAGATGGGATGAAGAGATGGGAATGGCTGAAGTCATTGAGAAGA GTGGGAAAATGTGGGTAACAACTGGAATAGTTCGCGGTGGCAAGACTTATTCTTCAATTGAAGAGACTTTGTATCTCATG GAACTAGGGGCCTTAGATCTCTTTGATAATAGTGATAGAAGTATATCTCTAATAGAAATGTATGAAAAGGTTGCTGGCGG GAAGAGTGGATGTTGTTGGGAGCTGTTTGAGGTTTACAGGCACCTCAAGTCTCTTGGCTACATAATTAGGCGGCATGATG TTGCTTGGAGTTTGAAGAGTGTTAGAAGTTCTCATAATCCTATTGCTCTTGAAGCCACAGAAGAAAGCAGTCAACTAGAA GAAATGGGTTCCAAAGTTGAGCTTTGTATCAATAAGTTATTTGGTGAGTTGAAGATTAGTGATGTGAAGCCAGATTTTGA TATTTATCTTCCAAACAGCAGGTTTAGAAAGTCTTCTCCTGGTGATCCGAATTTTTTGCTGTACTTGTCCAGGAGTAATC CACCATCTAGAGCAGAAATTGAAGCCCTTGAGAGACAATGTGATGGCATTCCTTTGAAAATCTGCCTGGTCACAGAGGGA AGGGTCAGTTTCTTTTCCTTTGACAAGGTTGAACTTCCTGTTCTACCATGA
Protein sequence (LotjaGi1g1v0671100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSDDDEVYLETASDEEELGFSSASMPKLQFRNVKSKCRWDEEMGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLM ELGALDLFDNSDRSISLIEMYEKVAGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLE EMGSKVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEALERQCDGIPLKICLVTEG RVSFFSFDKVELPVLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 254 | 234 | 1.3E-91 | ||
| Pfam | 26 | 88 | 63 | 1.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0671100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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