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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0672200 |
| Transcript ID | LotjaGi1g1v0672200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT2G41710.4 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q8GWK2|AP2L4_ARATH AP2-like ethylene-responsive transcription factor At2g41710; TrEMBL-Plants: tr|V7CXU8|V7CXU8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0672200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123686742..123689448) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCATCTTCTTCCGATCCAGGCAAGTCGGCGGAGACTTCAGAAGCCGTCGCGGCGGCGAACGACCAGTTATTACT CTACAGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACCGCCAAAGAGAGAATCAGTAAAATGCCTCCTTGTGCCG CCGGTAAACGCAGCTCCATCTACCGCGGTGTCACCAGGTAGCTACAAAACTCAATTCAGCTTTGATTTTTATTTTTATTT TTGGCAATTGCAGCTGAATTTCGTGAATTGTGTATTAGGCATAGATGGACTGGTCGCTATGAAGCGCATCTTTGGGATAA AAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGGTTCGGTTTCTCAAGTTGTACTATTGAAAATGAACACTT CAATATTTTTTGGGTTAATGATCAAATTAGTCCTGATTTTGTTAGCGAGTTTAATTTTAGTTGCTCGGCGGAAAAATGAC GTTTAGTCATTTTTATAAGTACCGGCTGTTTTTGACCGTTGCTAAACATTGTTTTTTCGTCGAAGGACTAAAGTCAAAAT TGCTTACAATGACTAATTTGACTATTCACGTTTTTTTGTGTGATCCTGAAATTACTTACATGTTTCGTTTTTGTGCTGTG CTGTGCATGAATTGGTTGGGCGAAAATCCGTTTGTGGTGGTGGCAGTTTACTTGGGTGAGTTAGCAATATGTTTTGGTTG TTTTTTTTTTGGCCTTTTGCTTTTTGTTATTGATGTGATGATTCTTGATGCTGATGGATTTTTGGATAGGGGCGTATGAT GATGAGGAAGCGGCGGCTAGAGCGTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAACTTCCCAGT AAGATAGATTGTTTGCTTGGTCGCATTGATTTTTGAAGGTTGCGTTAGTTGAGAAAGGCTGTTTAGTTTTCTGTTTTCTA TTGGTAGATGAAAATGGTGTCTACTCTTTTCCTGCTTTACAGTTTTCATCTAAGATGGTGTGGAAATGGATCGAATTTGA CGATTACCCAGCTACTTATTAGTATCTATGATATGTTTGCCTAAGATATCAGTTGCTTAAGGTTGAATTGTTTTGTTTGT AACTAGTTTTGACACTTGACGTTATAAATCCAGTGCCACCTTTGATAGAAAAAAGGTGTTAGCTATTTTCTTCTGGTAAA CATAGTAATTGTTGTAGTAAGTTTGGTCTATGATCTATGTCTGGCAGGTGACTGATTATACAAGAGATCTTGAAGAAATG CAGAATGTTTCCAGAGAAGAATACCTTGCGTCTTTACGGCGGTATGTAAGACTAAAAAATAATTTTTTAACTGGGAACCA TACTGCTGCTTACAAGTGATGCATTCTGCAGGAAGAGCAGTGGTTTTTCGAGAGGGCTATCAAAATATCGAGGACTCTCC AGGTGTGAATCTAGGAAATTGTTGTCTGCTGAATAACTTTTCCTTTAATCTATATTCACAGCTCTGAGCCTGTGTGTGTG TGTGTGTGAGGAGCTAGTTCCTAATTGACCGGCTGACTTTGTCTTTCTCTGCTTTGCTACCGTTCTTTATGATCTGCTGT ATAGCTGTCATCCTATATGTAGATTTTGACATGGATTTGATTGCTAACTTAAACTATGCATTTCATTTTGCATGTCATGG TACCAAATATTAGTCGATGGGAGACATCATATGGCCGTCTGGCGGGGTCAGATTACTTCAGTAGTATACATTATGGTACG TTCTAATCAAATTTTCAGTTCAAGAGCAGAGTAGTGCAATTCACATTCACTTGTATGTATACCTTTGGCTATTGAAACAA TAAAAAAAGTAATATTATTCAATTAGTTCCATCTGTTTTATTTGAAAGTCACCACCTTCTCACTGTTATACAATATCAAA GGTCCAGGGGATGATTCAGCAGCAGAAAGTAAATATGTAAGTGGTTTCTGCCTAGAAAGAAAGATTGATTTAACCAGTTA CCTCAAATGGTGGGGATCTAACAAGAGTCGACAAGCTGACGCTGGGTCAAGACTATCAGAAGACAAGAAACATGGTTTTG CTGGAGATGTTTGCAGCGAACTTAAAACACTGGAACAGAAAGTCCAACCCACAGAACCATACCAGATGCCAGAGCTAGGA ATGTCCCACAATGACAAAAAGCATAAAAGTTCTTCAGTCTCGGCCTTAAGTATATTGTCCCGATCTGCTGCTTACAAGAG CTTGCAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTGCTGATAATGATGAGAACGAAAACAAAAATATAGTCAATGAGT TGGATCATGGAAAGGCAATTGTGAAACCATCAAATCATGATGGCGGCAATGATCAACTTGACATTGCAATGGGAATAAGT GGGGCATTGTCTCTTCAAAGAACTGTTTATCCATTGGGACCATTCTTGTCTGCGCCGCTTTTGACAGCATACAATATTGT TGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTGTACTTCCTGCTGGACTTTCTCGCACAGCTGAGGTTG GTATATTTTGACTAAACTATTTTACTTTCTTTAAGAGGATTGAGATTACATGAAAATTTTAATTAACAGTAATGATATAT TCAGTGATTATAGCAGATTAGCAGTAATGATCCATATTATCAATTATTCTTACTAATATTCGTTTGA
CDS sequence (LotjaGi1g1v0672200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCATCTTCTTCCGATCCAGGCAAGTCGGCGGAGACTTCAGAAGCCGTCGCGGCGGCGAACGACCAGTTATTACT CTACAGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACCGCCAAAGAGAGAATCAGTAAAATGCCTCCTTGTGCCG CCGGTAAACGCAGCTCCATCTACCGCGGTGTCACCAGGCATAGATGGACTGGTCGCTATGAAGCGCATCTTTGGGATAAA AGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCGTATGATGATGAGGAAGCGGCGGCTAG AGCGTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAACTTCCCAGTGACTGATTATACAAGAGATC TTGAAGAAATGCAGAATGTTTCCAGAGAAGAATACCTTGCGTCTTTACGGCGGAAGAGCAGTGGTTTTTCGAGAGGGCTA TCAAAATATCGAGGACTCTCCAGTCGATGGGAGACATCATATGGCCGTCTGGCGGGGTCAGATTACTTCAGTAGTATACA TTATGGTCCAGGGGATGATTCAGCAGCAGAAAGTAAATATGTAAGTGGTTTCTGCCTAGAAAGAAAGATTGATTTAACCA GTTACCTCAAATGGTGGGGATCTAACAAGAGTCGACAAGCTGACGCTGGGTCAAGACTATCAGAAGACAAGAAACATGGT TTTGCTGGAGATGTTTGCAGCGAACTTAAAACACTGGAACAGAAAGTCCAACCCACAGAACCATACCAGATGCCAGAGCT AGGAATGTCCCACAATGACAAAAAGCATAAAAGTTCTTCAGTCTCGGCCTTAAGTATATTGTCCCGATCTGCTGCTTACA AGAGCTTGCAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTGCTGATAATGATGAGAACGAAAACAAAAATATAGTCAAT GAGTTGGATCATGGAAAGGCAATTGTGAAACCATCAAATCATGATGGCGGCAATGATCAACTTGACATTGCAATGGGAAT AAGTGGGGCATTGTCTCTTCAAAGAACTGTTTATCCATTGGGACCATTCTTGTCTGCGCCGCTTTTGACAGCATACAATA TTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTGTACTTCCTGCTGGACTTTCTCGCACAGCTGAG ATTAGCAGTAATGATCCATATTATCAATTATTCTTACTAATATTCGTTTGA
Protein sequence (LotjaGi1g1v0672200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSDPGKSAETSEAVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDK STWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGL SKYRGLSSRWETSYGRLAGSDYFSSIHYGPGDDSAAESKYVSGFCLERKIDLTSYLKWWGSNKSRQADAGSRLSEDKKHG FAGDVCSELKTLEQKVQPTEPYQMPELGMSHNDKKHKSSSVSALSILSRSAAYKSLQEKASKRQENSADNDENENKNIVN ELDHGKAIVKPSNHDGGNDQLDIAMGISGALSLQRTVYPLGPFLSAPLLTAYNIVDPLVDPVLWTSLVPVLPAGLSRTAE ISSNDPYYQLFLLIFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 404 | 400 | 3.6E-201 | – | |
| PANTHER | 5 | 404 | 400 | 3.6E-201 | – | |
| SUPERFAMILY | 59 | 127 | 69 | 4.38E-17 | ||
| Gene3D | 60 | 128 | 69 | 5.5E-21 | ||
| ProSiteProfiles | 60 | 126 | 67 | 20.126 | ||
| SMART | 60 | 132 | 73 | 1.9E-25 | ||
| Pfam | 60 | 118 | 59 | 2.0E-12 | ||
| PRINTS | 61 | 72 | 12 | 4.1E-5 | ||
| PRINTS | 108 | 128 | 21 | 4.1E-5 | ||
| MobiDBLite | 256 | 280 | 25 | - | – | |
| Coils | 301 | 321 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0672200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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