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LotjaGi1g1v0673700.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0673700
Transcript ID	LotjaGi1g1v0673700.1
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain-containing protein, putative; TAIR: AT5G22380.1 NAC domain containing protein 90; Swiss-Prot: sp\|Q9FMR3\|NAC90_ARATH NAC domain-containing protein 90; TrEMBL-Plants: tr\|A0A0L9U8L9\|A0A0L9U8L9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0673700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:123959765..123961025) extracted from Lotus japonicus Gifu genome v1.2.

TTTCTATATAAACGATCCATCAACCGTGCATGAGAAGTGAATTGAATTATATGCAACAGCAACAAAAAGAGAAGAAACAG CTGCAGTGAGTGAGAAGAAGATCAGAATATGGAAAACATGCCACCAGGTTATCGTTTCTACCCCACAGAACAAGAGATTA TTACATTCTATCTTCGCAATAAGCTTGAAGGACAAAAGGAGCACATGAATCGGGTTATACCAGTCCTTAATATATATGAT TACAACCCATCACAACTCCCACGTACGTTTATATGAATCTTAATTTTATTACTATAGTAACTTGATCTAGCTACTTATAT ACAATAAGACATATATCATTGATGAATTAACGTTGCTTTTGTTAATTGAATGGTTTCAGAACTTTCAGGAGAAGCGAGTA CGAGAGACACGGAGCAATGGTTCTTTTTCATTCCGAGGCAGGAAAGTGAAGCCAGAGGAGGGAGACCGAAGCGTCTCACA ACTAGTGGGTACTGGAAGGCTACGGGGTCTCCTAGTCGCGTTTATTCTTCTGACGGTTCTGCAATCGGCATGAAAAGGAC CATGGTGTTCTACAATGGAAGGGCTCCCAGAGGAAAGAAAACCGATTGGAAAATGAATGAGTACAAGGCCCTCCAACAGG GTGGACTAGAAGTAAGCATCTCAAAATAATTAGACTAGACACTTTCAAATGTTTTTGATTATAAGTAATTAAGTTAATTG CATTACTCATTGCAGTTAAGGCAGGAATTCAGTTTGTGCCGAGTGTACAAGAAAACAAAGTGCTTGCGAGCATTTGATAG ACGACCGTCACCGCCAATTAGGAGGGACATTATAACAGGTAGCAGCAGCAGCAATCCTAATCAAGATGATGAACCTGCAC AATCCCAGAAGGGTTCAGGGTCAACACATGTTCAAGTGATGGAGGAGAGAAGTGTAATTATAACAAGCTCACCAGAGAGC TCTCCCTCACAGGATGGAGGAGAAGGAGAAGCTGCCCAAATGCAGATTGATAACGAGCCTCTGTTGGATTGGGAGCAAGT CGATTGGTTCTTGGGATTGGAACCATGACTCCCTTGATTAACTTGTTCAAGTGCAATGAACTAGCTAGACTCACCTAATT AATTGGTAGATATGTAAGTGATTGTGAAAAGTTTAAGCATCGATCCAATCACACTATTTAATTAGTTAACGAACTCAATG ATGATAGGTTTAGTTTGGATATAATGGATCTTATTATCAATTTCTGAAACCCTGAGTTGTG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0673700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAACATGCCACCAGGTTATCGTTTCTACCCCACAGAACAAGAGATTATTACATTCTATCTTCGCAATAAGCTTGA AGGACAAAAGGAGCACATGAATCGGGTTATACCAGTCCTTAATATATATGATTACAACCCATCACAACTCCCACAACTTT CAGGAGAAGCGAGTACGAGAGACACGGAGCAATGGTTCTTTTTCATTCCGAGGCAGGAAAGTGAAGCCAGAGGAGGGAGA CCGAAGCGTCTCACAACTAGTGGGTACTGGAAGGCTACGGGGTCTCCTAGTCGCGTTTATTCTTCTGACGGTTCTGCAAT CGGCATGAAAAGGACCATGGTGTTCTACAATGGAAGGGCTCCCAGAGGAAAGAAAACCGATTGGAAAATGAATGAGTACA AGGCCCTCCAACAGGGTGGACTAGAATTAAGGCAGGAATTCAGTTTGTGCCGAGTGTACAAGAAAACAAAGTGCTTGCGA GCATTTGATAGACGACCGTCACCGCCAATTAGGAGGGACATTATAACAGGTAGCAGCAGCAGCAATCCTAATCAAGATGA TGAACCTGCACAATCCCAGAAGGGTTCAGGGTCAACACATGTTCAAGTGATGGAGGAGAGAAGTGTAATTATAACAAGCT CACCAGAGAGCTCTCCCTCACAGGATGGAGGAGAAGGAGAAGCTGCCCAAATGCAGATTGATAACGAGCCTCTGTTGGAT TGGGAGCAAGTCGATTGGTTCTTGGGATTGGAACCATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0673700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENMPPGYRFYPTEQEIITFYLRNKLEGQKEHMNRVIPVLNIYDYNPSQLPQLSGEASTRDTEQWFFFIPRQESEARGGR PKRLTTSGYWKATGSPSRVYSSDGSAIGMKRTMVFYNGRAPRGKKTDWKMNEYKALQQGGLELRQEFSLCRVYKKTKCLR AFDRRPSPPIRRDIITGSSSSNPNQDDEPAQSQKGSGSTHVQVMEERSVIITSSPESSPSQDGGEGEAAQMQIDNEPLLD WEQVDWFLGLEP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	2	155	154	1.7E-47	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31989 View details on PTHR31989 Search for proteins/transripts with this domain View external data on PTHR31989	4	206	203	2.4E-84	–
PANTHER	PTHR31989:SF4 View details on PTHR31989:SF4 Search for proteins/transripts with this domain View external data on PTHR31989:SF4	4	206	203	2.4E-84	–
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	4	155	152	48.494	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	5	134	130	3.4E-30	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	13	160	148	7.7E-43	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	164	237	74	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	173	225	53	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0673700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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