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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0676500 |
| Transcript ID | LotjaGi1g1v0676500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TERMINAL FLOWER 1; TAIR: AT2G27550.1 centroradiali; Swiss-Prot: sp|Q9ZNV5|CEN_ARATH Protein CENTRORADIALIS-like; TrEMBL-Plants: tr|Q6TDS5|Q6TDS5_LOTJA CEN/TFL1-like GTP-associated binding protein; Found in the gene: LotjaGi1g1v0676500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124327465..124329385) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGCAGGAAATTCTCATTGAGTTCTTACTTTTTACTTAGTTCCTCCACTGACCAACTTCTTCTCTCTTCTTCCTTGTT CCTCTTACAATACAAACAATGTCAAAAATAATGTCCACAGATCCTCTAGTTGTTGGAAGAGTGGTAGGAGATGTACTTGA TAGTTTCACCACTAGCATGAAATTGACTGTGAGTTTCAATAACAAGCAAGTGTTCAATGGCCATGAGTTCTTCCCTTCCA CTATTAACACCAAGCCCAAGGTTGATATTGGTGGTGGTGACATGAGGTCCTTCTTTACACTGGTATATATTTCCAAAAAA ATATCACTTTTTTTTCCTTTTATTCATTAAAGGGGAACAAAAACAAAATCCTTGACCTGTTTCCCTGTTTGTTGTTTTCT ATAATCATGTTCTCCCACAGTAGGACTCTGTTCTTAGAAGTTAGAATGTTCTCTTAAGAAAACAAAACCTGCTTCATTGA ACTAAATGTCTCACTTTTTCACTACTGCAGATCATGACAGACCCAGATGTTCCTGGACCTAGTGATCCTTATCTCAAAGA GCACCTGCACTGGTACTTGATATATATACACATACTATAATCATAAAAACCAGTTATTTTCTTTGATTAACTTTAGCTTT TTTACTTGGACTATTTTAGCATGTTTGTATCAACTTCTAGTTACTTAGAATCAATTTTGACATACAGAAGCTACTCATAA AAGTTTTTTCCCAAACTTGATTTTGATGTTAAAATCAATTATAAACGAATTATCAAACATGGACTGTAATTAACACCAGA CAGCCATTTGTTAGATGATTGATCTGGAAAACAATATAACAGTGTTCATGTGTGAAAATTCTGCTTTAACTAATTTTAAA GGTAAATTAGTTTTGAGGAGAAACTTCTGTGTCAAAATTAATCATGAGAAATTAGAAGTCGATCCAAAAATATATATAGA TGATGTTAAAAAAGCCCTCTTAGGATTTATTTAACATTCACTTTGTGTTCAAATTATTTGATCTTTTGCAGGATGGTGAC TGATATTCCCGGAACAACAGATGCCACATTTGGTAAGTAAATTTATCAATTGATCTACTAGAAAAAACCATGTATATATA TGGATATAAATGGTTATGTATGAACATACACATATGTGGATGAGAAAGAAAGACTGACAAATATAGCTGTGTTTTTAATT TTGTAGGAAAAGAGTTGGTGAGCTATGAGATTCCAAAGCCTAACATTGGGATCCATAGGTTTGTGTTTGTCCTGTTCAAG CAAAAACGTAGGCAATGTGTGAGTCCACCATCTTCAAGGGATCACTTCAACACTCGCAGTTTTGCAGCACAGAATGACCT TGCTCTCCCTGTTGCTGCTGTCTACTTCAATGCTCAGAGGGAAACTGCTGCAAGAAGACGCTAGTTTCTATAGCTAGCTA TAGCTGGAGCTACTACCTAGTGCAAGCTAAAGCATTGAATAAAGTGATATCAAGTATAATTAGTTTTGCTTTGATGATGT GAATTGAGTACAAAGGGCTTCAGAAATAACTTGCAGAAGGGGAATCAGTCTAGCTCTTCTTTGACTAGTAATTTATGCTG TAATGTTTAGCTTTCCCTGCTCAGATATGTGTTGTACTGTGTTATTGTGTATCATGTATAATATAATTAGCATTGCCTTA TGGGTATTATCATTATATATGAGGTTATCTTGATTATATGGAGAAATAAGATCAGGCATGGAGCCACACCATGTCTTTTC CTTACCTTTAATTGTTTGTCTATTTAGGGTTTGGTTTACCAAGTTGAAACTTGATCAATTATACATTTGTTAGCAGTGTT TAGATTTATTCGCAATTTGAATTCATTTTCTCTTTGATCTTATTTTCACCAACTTTTTCTTCTTATCTCTTTTTGTTTTC C
CDS sequence (LotjaGi1g1v0676500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAAAATAATGTCCACAGATCCTCTAGTTGTTGGAAGAGTGGTAGGAGATGTACTTGATAGTTTCACCACTAGCAT GAAATTGACTGTGAGTTTCAATAACAAGCAAGTGTTCAATGGCCATGAGTTCTTCCCTTCCACTATTAACACCAAGCCCA AGGTTGATATTGGTGGTGGTGACATGAGGTCCTTCTTTACACTGATCATGACAGACCCAGATGTTCCTGGACCTAGTGAT CCTTATCTCAAAGAGCACCTGCACTGGATGGTGACTGATATTCCCGGAACAACAGATGCCACATTTGGAAAAGAGTTGGT GAGCTATGAGATTCCAAAGCCTAACATTGGGATCCATAGGTTTGTGTTTGTCCTGTTCAAGCAAAAACGTAGGCAATGTG TGAGTCCACCATCTTCAAGGGATCACTTCAACACTCGCAGTTTTGCAGCACAGAATGACCTTGCTCTCCCTGTTGCTGCT GTCTACTTCAATGCTCAGAGGGAAACTGCTGCAAGAAGACGCTAG
Protein sequence (LotjaGi1g1v0676500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKIMSTDPLVVGRVVGDVLDSFTTSMKLTVSFNNKQVFNGHEFFPSTINTKPKVDIGGGDMRSFFTLIMTDPDVPGPSD PYLKEHLHWMVTDIPGTTDATFGKELVSYEIPKPNIGIHRFVFVLFKQKRRQCVSPPSSRDHFNTRSFAAQNDLALPVAA VYFNAQRETAARRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 174 | 172 | 2.5E-53 | ||
| PANTHER | 6 | 174 | 169 | 5.6E-103 | ||
| PANTHER | 6 | 174 | 169 | 5.6E-103 | ||
| SUPERFAMILY | 14 | 168 | 155 | 1.83E-49 | ||
| CDD | 27 | 165 | 139 | 4.30588E-40 | ||
| Pfam | 50 | 162 | 113 | 2.6E-13 | ||
| ProSitePatterns | 66 | 88 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Negative regulation of flower development | Any process that stops, prevents, or reduces the frequency, rate or extent of flower development. |
Expression pattern of LotjaGi1g1v0676500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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