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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0676600 |
| Transcript ID | LotjaGi1g1v0676600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein YIPF; TAIR: AT3G52760.1 Integral membrane Yip1 family protein; Swiss-Prot: sp|Q8N8F6|YIPF7_HUMAN Protein YIPF7; TrEMBL-Plants: tr|I1NAM3|I1NAM3_SOYBN Protein YIPF; Found in the gene: LotjaGi1g1v0676600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124335624..124339754) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAATTAAGAAGGGGAGCCCCAATAAAATGAAAATACTAGAAAGCCATCGAACCCACAAAAAAGCTCCCAAAATAAC GTTGTTGTGGTGGTGTGGTCTCTCCACTCTCAGCGACTAAGAAATCCCCAAATTCGTCGATTCAACTTTCTCAAAACCCT AATTTCATCACCGATTCCATCCAGATCTCAATCCCGATGGACAACAAGCAATTCAAAATCCCGCCGGTCAATTTTCAAAC CTCCGGGAACCCCAACGTCGCCGGCCCAAACATCCAGCAGCGCCGCGTACCCACGCCGCCGTTCCAACCCAACTCCGGCA TCCCCTTCATGTCCTTCGACATAGGCTCCGCCACCGCGTCCACCTCCTCCGGTCAAATTTACTCCGGCCCCGGCATCGGC GGCTCCGTCAACTTCGACGACGAGGAGCCTCTCCTCGACGAGCTCGGTATCCACCCGGAGCAAATCTGGAGCAAAGTCAG ATCGGTTCTGAACCCGTTCCGCGTGAACCACACCGTGCACAAGGACGCAGATCTATCAGGCCCTATTCTCCTCTACATGG CCTTTTGCCTCTTCCAGTTACTCGCCGGGAAGATTCAATTCGGCGTGATCTTGGGTTGGATCGTGGTTTCCTCCATCTTC TTGTACGTGGTTTTCAACATGCTGGCGGGTCGAACCGGAAATCTGGATCTTCATACCTGTACTAGTGTCGTCGGTTACTG TATGTTTCCGGTGGTGATTTTCTCTGCTCTGTCGCTGTTTCTGCCGCAGGGAGGGGTGTTCGGGCTTGCGATCGCGGCGG TTTTCGTGTTGTGGTCGACGAGGGCTTCAACGGGCCTCATTGTCTCTCTCACCGATGGCGGCGATGAACATCGCGGGTTG ATAGCGTACGCGTGTTTCTTGATTTACACTCTGTTTTCGTTGCTTGTCATATTCTAAGGATGGGTTTGGCGCTGAGATTC ATTGGATCGCAGTGCTTATGTTTTTGGATGTAGTGAAACGCTTCATTTTGTCTTGCCCTTGCATTTTGAACCATATGATT TTCAATTCTTATGTTGTAGCCATACTATGATATAGAAAATGTAGGTATTGCCCTTGATTGCAAGTTTTCGATTATGAAGT TATCCCTAGGACTTGTATTTCTGTGTGTTGTGGAAGTAGATATATTTACAGTACACCTGCATTTTTTCTTCTGACTTTGA AAGGTTATGTTCCTTTAGGTTTTCTTTCAGAAGATCTTTAGCTGGGCTAGCACGTATTGCTCGAGGTCTAATTCAATTAT GGATTTTGTTTGTATGGTGGTAGAAAACTAGGTCAGACTGGATTTTAAGATAAGTTCAAGTTGTTAACATGATACCTAAT TTGTGTGTTCAACTGAATCATATGTAATTGAATAGTTGGAGCGCTTACATCTATCTTCATCAGAGTGAATGCTCTGTGAT CCTAGCTTTTAGCTTGCTGCTTGAGTGAGGGGATTTCAGCTCAGAAGTAAAATGCCAGACTTGATTTTGCATACTAGAGT TGTTACTACTTACCTCTTGTATTTAGTAGCTTTTTATGAGAGTGGTAAGGCAGAGGTATTTATTTTGATCAATTGATTTG ACAAAATACATATATACTTATGACATGTCACAACAACCACAGTTGCTTATGATGGAATAAACTTACATTAGTAACATCTT AAATATATAGAGTCCTGTCTTTTAGTTTAAGGATATTCAAATTGGGCCATGCTGCTTGAGACTTGTATAGTCTAAGTATT TTCAGAATCAAAGTATTCCGACATGCAAACTGACCATGAAAGTTAATTTGCCAACTAGCTGAATCTGATTCTTCTTACCC CTTCTCTCCTTATTTGGATATGTAGATCTGATCTAAATTATGGACTCTGCTTTGAATTTAAATCCCACGGACAAATAATA GCCACATTTAAATTCTGTGTGGATTGAATGATTATTAGAGCATAATATCTTGTTGTGATAATAATAAGAGGAATTTTGGA CTAGAATGACCTTTTTGCAGTTTCAACTGTAAATTAGTCATTCGATCTATTCTGTGGGGGTCTAGGATGCCCCATTAGAT GTATAAAATGGCCTGTCTAGAGTTCTTACAGAATCTATTGATTAGATGTACTGTTTATGATTTCTCATTATATTGCTTTA TTGGAATATCATAAGCAAACAATCTATCTGAAAGTTTGGTGGAAATATGGAAATTTTGATGTTGATTAGCATTCTGTTTC CTCTCAATTGAATAGAAAGCTTTGCTCAGCTCTAGGAAGCCTACTATGGTTGGAAGAGTTTGCTCCATCCATATTAGTGC ATATATATCCCTTTCCATTATGCCTCCCCTTGTGCCCATTGAAATTCATCCAGACCTTCTATGACTCAAGATTCATTCCA CCACCTATTGTACAGTTTTTCATCAGCAGCTTCAGTTTTTTGAGGGTATCATTTTATTTGGCTTGGGTTTCATTTTACTT GGCATCCTTGATCTATGTAGGGTACACCTGAAAAACTAAGGCTGATAGGTTGTTGACTAACTGATAATAAAGAAATTCTT TTGCACCAATGTACTTTATGAGGCATTTTTTATTTAATATCATAAACCAGTGTACACCATTTTTACATGCTCTGTCATTG AGATATATTATTATGCTAGAATGGATATATTCTTATTGTCAGAAATAGCATTTTATGAACTTAACACTATCAATATTGCC TTTGTTGTCAGTTAATTGTAAATATTGCCCCACTTAGATTTGGTTAGTACCTGGTCCCAAGGTGTTTGAGTAATTTGTAA GAGGTCATACAGTTTAACCTTCCTAGATGTAACTAAACTGGTAGTAAGGGGTTAAATGGGTGGCAGGGGAGGGGGGAAAT ATTTATGGATTTGGATTTCTTAGTTTTTAATAATAGAATATCTAACTGTTTGTTAGAGGAAATACATGAATTTTATCATA CAAGGACCTACCATGATAGGTTTTAGGCTGCTAATTAAATTTAAAAAATGTGTCTTTATTTATCTAATAGAATTGTATTG TTGAGGGCTTAGTGTCCAAAAATAATGTCCAAAATAAGGAAATATCTTAAAGAGTATAGAAAATAACATAATAGTTCTTA TCTTAACTTGCTTCTCCATTTTAGATCATCTGCTTATGCCAGATGGATTAAGATCTTTCAGCTGTAGGATTATCTGTGAT ATATGGATGCATTTGTTGTCTGTACTCTGTATCTGTTAGAACTTTCGTGGGGAACTTTGGCTTCAATGTCTTGCATGTAA ATAGTATATCAGGTCATACTGCAGTGTGTTTGATTATTTTGTAAGTATTTATAATTATTTGCTGTGAAGGGAACTCATTC TTGTTAGCTACTCACAGATGGTATATTAACAACTAAGTGAGCTGAAAAGTTTGGCTTGTTTGTTAAGTTTAAGCTTTTAG CATTCCACAGGAGAATTGCCCTGTAGTGTCTTTAGACTTCCGTGCAACTCTGTTTACTCCTCTAACTGTGTGTGAATATA TTTGTAGGTATATCAAGCTTCTAGTAGAGTTTCTTTGCAAGTTTGTTGGTTGTTAATGGCTAAATGCAAATTACGATGAA ATTTTCGTTCTTTAAAAATCTTCGAATTTTTCAGTAAAAAAACTCCTATCATTACCTTACTAGTATTATTAATGGCTAAT AGAATCATGCTTATTGTTTGTAACGATTTTAATTTCAAGGTCTAAAGGCTTTCCGATAGTAAAGTGAGATTCTGGGATTT TTATTAGTAGAATGTGTTTTAACTTTTAAGTGAATGATAGTATTTGATAAATTGATAGGAAGTGTTTTTCTTTTCTTTCC TTTTGCATGAAAGAAAAGCACCACATTTACCCTCTAGATAAAATGGAGACATAAATCATGATTGTGAATCACATAAATTT ATATATTTTGTTAATTGACCTGATATTATTTTAGGCAATTTTTTTGATACCCGTATAAAAATGGACGAATTTTATATCTT TTAACCTTAATTTGTCATGTTTTCTTAACTTTTATAATTTACAAATAATTAACTCTCATTTTAAATGGGTATCGTTCATA ATTTTATTGGTGTAAGAGGGAATTTTGGAGACAACAAAACCTGGAAAAGAT
CDS sequence (LotjaGi1g1v0676600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAAGCAATTCAAAATCCCGCCGGTCAATTTTCAAACCTCCGGGAACCCCAACGTCGCCGGCCCAAACATCCA GCAGCGCCGCGTACCCACGCCGCCGTTCCAACCCAACTCCGGCATCCCCTTCATGTCCTTCGACATAGGCTCCGCCACCG CGTCCACCTCCTCCGGTCAAATTTACTCCGGCCCCGGCATCGGCGGCTCCGTCAACTTCGACGACGAGGAGCCTCTCCTC GACGAGCTCGGTATCCACCCGGAGCAAATCTGGAGCAAAGTCAGATCGGTTCTGAACCCGTTCCGCGTGAACCACACCGT GCACAAGGACGCAGATCTATCAGGCCCTATTCTCCTCTACATGGCCTTTTGCCTCTTCCAGTTACTCGCCGGGAAGATTC AATTCGGCGTGATCTTGGGTTGGATCGTGGTTTCCTCCATCTTCTTGTACGTGGTTTTCAACATGCTGGCGGGTCGAACC GGAAATCTGGATCTTCATACCTGTACTAGTGTCGTCGGTTACTGTATGTTTCCGGTGGTGATTTTCTCTGCTCTGTCGCT GTTTCTGCCGCAGGGAGGGGTGTTCGGGCTTGCGATCGCGGCGGTTTTCGTGTTGTGGTCGACGAGGGCTTCAACGGGCC TCATTGTCTCTCTCACCGATGGCGGCGATGAACATCGCGGGTTGATAGCGTACGCGTGTTTCTTGATTTACACTCTGTTT TCGTTGCTTGTCATATTCTAA
Protein sequence (LotjaGi1g1v0676600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNKQFKIPPVNFQTSGNPNVAGPNIQQRRVPTPPFQPNSGIPFMSFDIGSATASTSSGQIYSGPGIGGSVNFDDEEPLL DELGIHPEQIWSKVRSVLNPFRVNHTVHKDADLSGPILLYMAFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRT GNLDLHTCTSVVGYCMFPVVIFSALSLFLPQGGVFGLAIAAVFVLWSTRASTGLIVSLTDGGDEHRGLIAYACFLIYTLF SLLVIF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 110 | 110 | - | – | |
| PANTHER | 5 | 246 | 242 | 6.0E-133 | – | |
| PANTHER | 5 | 246 | 242 | 6.0E-133 | – | |
| MobiDBLite | 8 | 29 | 22 | - | – | |
| Pfam | 84 | 224 | 141 | 5.9E-11 | ||
| Phobius | 111 | 129 | 19 | - | – | |
| Phobius | 130 | 134 | 5 | - | – | |
| Phobius | 135 | 156 | 22 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 157 | 167 | 11 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 168 | 189 | 22 | - | – | |
| Phobius | 190 | 194 | 5 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 195 | 216 | 22 | - | – | |
| Phobius | 217 | 227 | 11 | - | – | |
| TMHMM | 226 | 245 | 20 | - | – | |
| Phobius | 228 | 245 | 18 | - | – | |
| Phobius | 246 | 246 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0676600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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