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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0681000 |
Transcript ID | LotjaGi1g1v0681000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plant/T32M21-140 protein; TAIR: AT5G04550.1 type-1 restriction enzyme mjaxp r protein (DUF668); Swiss-Prot: sp|P39066|ACUB_BACSU Acetoin utilization protein AcuB; TrEMBL-Plants: tr|A0A0B2QAV9|A0A0B2QAV9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0681000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124826778..124829430) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATAATTTATTTTCAAAACTACATAAATACTCCAATTGTTGTCATCCCTGCACTCAACGTAATGTCCACTTTTCCA TATACCTGCTGTTGACGGATCCATTTCTCTCTGTCTTCTTTATCCATTACCGTTTCAGCACTGTGAATCTGGAGATGCTA AGCTCAGCTCTTCTACTCTCTTTGTCTCTCTTTCAACCCTTGAATTTCAGCTCAATGACACTCCAGGGTATGATCTTTTT TACTCTCTCTTTGATGTTCTGTTTTTTTGTTTGTAATTTTCTAGTTGCTTTGGTTGGTTAGGTAGAATCTTTGTTGAATA ACAACAAAAGAAGACAAAAATTTTGAATTTTGAAAACTGGGTTTTGAACCTGTGAAGAGTTGCCAACTCTTAACTCTTAC CATGGCCAATTTTGAAAAAAAAAATCTACAGATCTCATCGTTTTTAGCTTGCTTTTCCATGACCAAACAATAATTGGGGG TTAGGTTTTATTTTCCTGCTTTGTGGATTTTGACTTTCTAATTTGTATTAGTGGATTTAATTGCTTTCAGGGTACTAAGT GTGTATTAGGAGACTTGGTTCTTGATTAGTGAATCCACTGGATTGAGTAAAATCAATGGGAGGTGAAACAGTGAATGGTT CGTCATGGCTCAGTGCTTTGTGGCCGGTCTCACGGAAGGGTGCATCAGATAATAAGGCAGTGGTGGTTGGGGTTTTGGGG TCCGAAGTTGCGGGCTTGATGTTGAAGGTTGTTAATTTGTGGCAATCTTTGAGTGATGAGGAGGTATTGAGTCTGAGGGA AGGGATAGTGAACTCAGCTGGGGTCAGAAAGCTGGTTTCTGAAGATGATGACTACTTGATGGAACTTGTATTGAATGAGG TACTTGATAACTTCCAATCTGTTGCGCGAACTGTGGCCAGGTTGGGTAGGAGGTGTGTGGATCCAGTTTATCATCGTTTT GAACATTTCGTTCGCAGCCCGGCTCAGAATTACTTTCAGTGGTCTGGGTGGGATTACAGAGGGAAGAAGATGGAGAGGAA AGTGAAGAGGATGGAAAAATTTGTTGCTGCTATGACACAGCTATGCCAAGAGCTTGAGGTGCTAGCAGAGGTTGAGCAGA CTCTCAGGAGAATGCAGGCAAATCCTGTATTGCATCGGGGGAAATTGCCTGAGTTTCAGAAGAAAGTCACGTTGCAGCGC CAAGAAGTTAGAAATCTAAGAGACATGTCTCCGTGGAATAGAAGTTATGATTATGTTGTCCGGTTGTTGGTGAGATCACT ATTTACAATACTGGAGAGGATCATACTTGTCTTTGGAAATAACCACCTAGCAACAAAACAGAATGAAAATGAATCTCCAA ATACGACTGCTAATAATCTTCTGCGCAGTCAATCGTTTTCTGTTTTTATGCATTCCTCTGTTCATCCTTCAGAGAATGAT CTCTATGGATTCCATTCAGGACATCTGGGGAGGAGATTAGCATCAAACTCAGGCATTTTAGTTGACAAGAAACAAAGAAA GAAAAAACAGCAGCAGGCTCTACATCCACCGGCTTTGTGTCGGGATCGCCTAAATTCTGAGAGCAAGCAATTTGGACCTA TTGGGCCGTTCAAAAGTTGCATGTCTGTTGCAAACAATTCTCCTGTCATCGACAGTTTTGTGCAGACGAATGGTGGTTCT ATGAGGTTAACTGATTCTCATATGGAAAATGTTGACAAAATGAAAAGAGTGGAGAAATCATCTCTCTCCAACAGAATTAG GATATATTCTAAATTATCCATGAGCAACCGGTTAAAGCCGGCTTCATTTACCCTTGGTGATGCGGCTTTAACCCTGCATT ATGCAAATATGATTGTATTGATCGAGCAAATGGTGTCTTCACCTCACCTGACTGATCCTGAACCAAGAGATGATCTGTAC AAGATGCTTCCAGCTACTATAAGAGCTGTTCTGAGGCATAAGCTCAAGGGACGCAAGAAAAGTAAATCTTCATGGGTCTA TAATGCAGAGATTGCAGCAGAATGGAGTGCGGTACTTGCACAGATATTGGATTGGTTGGCTCCACTTGCACATGACACTA TAAGGTGGCATTCTGTAAGAAGTTTTGAGAAGGAGCATGCAACTTTGAAAGCAAATATCTTGCTGGTCCAGACTCTTTAC TTTGCAAATCAAGTAAAAACTGAAGCTGCTATAGTTGATCTTCTTGTCGGTCTCAACTATGTATGTAGGATTGATACCAA GGTAGGAGTAAGAGATAGAGTGGAGTGTGCTAGTGCTAGATCATTTCATGGTGTTGGTTTGAGAAAAAATGGAATGTATA GTGAATATTTTTAGTAGACTGACATTACCAATGTCAGGAGTGAATGACATTTTTTTAGTAGTCTATGACTTTGCTAAATA GTACTTATAAATGTTGTTGTTTTAATTCTATTCTTAGGTAACATTTGCATGAATCAATTTAGCTTAAGGTTTTCAAAGTA GATAATTTGTTGGAAATACGGAAACATATTTTCTTCAGCTTCTGTAACCACCATTCTAAAGCATTCCATGTCAGTTTTCC ATTGCATCACCATTCAAATGCTACCTCACACTATTTGATCACTCAAATAGTTTACTTTGTTAATGTATCTACTATCTACT CATCAATCATCAC
CDS sequence (LotjaGi1g1v0681000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTGAAACAGTGAATGGTTCGTCATGGCTCAGTGCTTTGTGGCCGGTCTCACGGAAGGGTGCATCAGATAATAA GGCAGTGGTGGTTGGGGTTTTGGGGTCCGAAGTTGCGGGCTTGATGTTGAAGGTTGTTAATTTGTGGCAATCTTTGAGTG ATGAGGAGGTATTGAGTCTGAGGGAAGGGATAGTGAACTCAGCTGGGGTCAGAAAGCTGGTTTCTGAAGATGATGACTAC TTGATGGAACTTGTATTGAATGAGGTACTTGATAACTTCCAATCTGTTGCGCGAACTGTGGCCAGGTTGGGTAGGAGGTG TGTGGATCCAGTTTATCATCGTTTTGAACATTTCGTTCGCAGCCCGGCTCAGAATTACTTTCAGTGGTCTGGGTGGGATT ACAGAGGGAAGAAGATGGAGAGGAAAGTGAAGAGGATGGAAAAATTTGTTGCTGCTATGACACAGCTATGCCAAGAGCTT GAGGTGCTAGCAGAGGTTGAGCAGACTCTCAGGAGAATGCAGGCAAATCCTGTATTGCATCGGGGGAAATTGCCTGAGTT TCAGAAGAAAGTCACGTTGCAGCGCCAAGAAGTTAGAAATCTAAGAGACATGTCTCCGTGGAATAGAAGTTATGATTATG TTGTCCGGTTGTTGGTGAGATCACTATTTACAATACTGGAGAGGATCATACTTGTCTTTGGAAATAACCACCTAGCAACA AAACAGAATGAAAATGAATCTCCAAATACGACTGCTAATAATCTTCTGCGCAGTCAATCGTTTTCTGTTTTTATGCATTC CTCTGTTCATCCTTCAGAGAATGATCTCTATGGATTCCATTCAGGACATCTGGGGAGGAGATTAGCATCAAACTCAGGCA TTTTAGTTGACAAGAAACAAAGAAAGAAAAAACAGCAGCAGGCTCTACATCCACCGGCTTTGTGTCGGGATCGCCTAAAT TCTGAGAGCAAGCAATTTGGACCTATTGGGCCGTTCAAAAGTTGCATGTCTGTTGCAAACAATTCTCCTGTCATCGACAG TTTTGTGCAGACGAATGGTGGTTCTATGAGGTTAACTGATTCTCATATGGAAAATGTTGACAAAATGAAAAGAGTGGAGA AATCATCTCTCTCCAACAGAATTAGGATATATTCTAAATTATCCATGAGCAACCGGTTAAAGCCGGCTTCATTTACCCTT GGTGATGCGGCTTTAACCCTGCATTATGCAAATATGATTGTATTGATCGAGCAAATGGTGTCTTCACCTCACCTGACTGA TCCTGAACCAAGAGATGATCTGTACAAGATGCTTCCAGCTACTATAAGAGCTGTTCTGAGGCATAAGCTCAAGGGACGCA AGAAAAGTAAATCTTCATGGGTCTATAATGCAGAGATTGCAGCAGAATGGAGTGCGGTACTTGCACAGATATTGGATTGG TTGGCTCCACTTGCACATGACACTATAAGGTGGCATTCTGTAAGAAGTTTTGAGAAGGAGCATGCAACTTTGAAAGCAAA TATCTTGCTGGTCCAGACTCTTTACTTTGCAAATCAAGTAAAAACTGAAGCTGCTATAGTTGATCTTCTTGTCGGTCTCA ACTATGTATGTAGGATTGATACCAAGGTAGGAGTAAGAGATAGAGTGGAGTGTGCTAGTGCTAGATCATTTCATGGTGTT GGTTTGAGAAAAAATGGAATGTATAGTGAATATTTTTAG
Protein sequence (LotjaGi1g1v0681000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGETVNGSSWLSALWPVSRKGASDNKAVVVGVLGSEVAGLMLKVVNLWQSLSDEEVLSLREGIVNSAGVRKLVSEDDDY LMELVLNEVLDNFQSVARTVARLGRRCVDPVYHRFEHFVRSPAQNYFQWSGWDYRGKKMERKVKRMEKFVAAMTQLCQEL EVLAEVEQTLRRMQANPVLHRGKLPEFQKKVTLQRQEVRNLRDMSPWNRSYDYVVRLLVRSLFTILERIILVFGNNHLAT KQNENESPNTTANNLLRSQSFSVFMHSSVHPSENDLYGFHSGHLGRRLASNSGILVDKKQRKKKQQQALHPPALCRDRLN SESKQFGPIGPFKSCMSVANNSPVIDSFVQTNGGSMRLTDSHMENVDKMKRVEKSSLSNRIRIYSKLSMSNRLKPASFTL GDAALTLHYANMIVLIEQMVSSPHLTDPEPRDDLYKMLPATIRAVLRHKLKGRKKSKSSWVYNAEIAAEWSAVLAQILDW LAPLAHDTIRWHSVRSFEKEHATLKANILLVQTLYFANQVKTEAAIVDLLVGLNYVCRIDTKVGVRDRVECASARSFHGV GLRKNGMYSEYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 567 | 562 | 2.2E-294 | – | |
PANTHER | 6 | 567 | 562 | 2.2E-294 | – | |
Pfam | 33 | 88 | 56 | 8.5E-22 | ||
Pfam | 399 | 490 | 92 | 3.8E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0681000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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