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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0681500 |
| Transcript ID | LotjaGi1g1v0681500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2-A13; TAIR: AT3G53000.1 phloem protein 2-A15; Swiss-Prot: sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15; TrEMBL-Plants: tr|I1JPV3|I1JPV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0681500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124877792..124881884) extracted from Lotus japonicus Gifu genome v1.2.
CACCAGATCACCTTACTCATCTTGAATTTTCCGGCATTTTCAATTTTCCGGGAAAATTTCCACACACAGGGAAAGCGAAA GGAAAAAGAAAACTCGTGAAACACGCTGAAAGAAAATTCACACACAGTGTTAATCCCTCTTTCTCACCAACCAAATGCTC ACCCATGACATTCTTCTTCTTCCATGGTGGCAGTAGCATGACCTGAAGGGAAGCGAAACCCTCGTCGTCGCGTTGTTGAT TCAGGTTCAGCTGGGGATGGGGGCCTCGCTGTCGAACCTTGGAACCAAAGGTTCGACCATCGGTCCCGGCCTCGGGGACA TCCCGGAGAATTGCGTCGCTCGCGTTTTTCTTCACCTCACTCCGCCCGAGATTTGCAACTTGGCCCGCCTCAACCGCGCC TTCCGCGGCGCTGCCTCCGCCGATTCGGTTTGGGAAACCAAGCTTCCCAGCAACTACAAGGATCTGCTCCACGCGCTGCC GCCTGAACGGTTCCAGAATCTCTCTAAGAAGGACATTTTCGCCCTCCTCTCTCGTCCGCAACCCTTCGATGATGGTAACA AGGTAGGGTTTTCAGTTTTTTCCCTATTCTCTGCTAGAGATGTTGGTTGATGGTGGAAATTTTGCAGGAAGTGTGGTTGG ATAGGGTTACGGGAAGGGTTTGCATGTCCATTTCGGCAAAAGCCTTGTCAATTACTGGAATTGATGACCGGAGATACTGG ACTTGGGTTCCTACTGAAGAATCTAGGTTACTATTTTCCTTAATCTTATCCTTTTACCCTGAATTTACTTTAGATGATTG CGTTTCGATCTTTAGTTTGTTGATTTGATGTAAGAACTTGAACATGCTTTTGATGGTGTTTAAAATTGAAGTTGAAACTT GAAACCCTAATGTAATTCTTGTTCAAGAACTACCTGACATCAGTGTCTGTGGTATGAAATTTGGTGGTGTCGACGTATTA ACTTGGAATTACTGAGTTGGAATTTGAATATGTGATTCTTGCTTGTGTTGGCTTACTGAATTTCCAGTTCACTTCACATG GGGAAGTTGCTTTTTATAGACTCTAGAGCCTCCATGAGAATTGCTTGTGCGCATACTGTATTATTTGGATAAAACCTTGT CTCATATGTATGAACATCCTTCGACTGCATTTATGTTGGAGTGATATTATTATACTTACTATATTTGTTCTGTTTGAGCT TTCCTGGCTGAAATCATGAAAAGCTTTTGTGTATATTAAGTACTCACTGCTATTTATGCTGTACTGTAACTTCCAAACTA CCTATTCGTTAAATATGTCTTAAATTCTAAAACTAGAATCCAACTATAAGTTTCCTGTTAGTCTAACTTCAGGTTTTCAA TTTTGGGCACATGATTTGTCTGTCAACAGTTTCACTTTTGTCTTGTTGGCTAGTTTGGTTCGTTTTGGTTTCTTTATGCT TGTCCTTTTAAGAAAGAGAAACTGTAAAGATCTCCTTCCTAAGTTTGTGTGTCCTGGTTGACCAATTTCTAGTTGATATA TGATTATTCAGTTTAAGAAGTAGGAGAGTAATTCTATGGTGTCCGATGCATTAGGATCAAATATAATATTATTTACTGTG TATGGATTATGACTTTGTTATCATTTATTGTTCTTAGCTTCCCTTTTTCTTTTTCTTGGGCTGTTAAATATCTCCTTTAA AAGTTGCAAACTTTATTTGTAATGGGAGTGTTAACTTGTTGGGTGCTTCGTGGTTCGGCTATGAATTTAAATATGTACAA CATGATTTAAAGAATTTCATGGAACTTTCAACTGGATCACTCTAAGAGTACTCCCCCTCCCAAAGGAATAAAATAAAGAA AAGAAAGCTAACTACTTGCAGGGGCCCAACCAAATGCCCTAGTGAGCTCAGAATAGTTCCTTGGTTTAGACTTTTATTTG GCCCAAATCTAATGTAAAGGTCATTGTTTAATAGACTACTTGGCAGTTCTGTTACTATATTTTATTCCGCAGGCAAAGAC TTCATCAACTAAATTCTAAGATTGTCCCTTGGAAAAGCAAGCTATCATGGTCCAACATTTATGATTTTTCTGGGGGCCTT TGCCTGTGAAAACTTTGATATTTGCACATTAAACTCTCTTTGTACGTGTACTTCCTTAGTCTGCATAAGAGTCATGAATT TGCTGTTTCATCATTGGATAAACTACACTTCTTGTCTCCTTCCCCTGAGTAATGCTTAAATCGTACTATGTTCACCTCTT ATTTTAAAAATCACACTTCTTTCCCACAAGAGATGAAATTTGCTACCTCTTAGAAGGGGTGGAGCAAGTATGAACACCTT ATTGTCAATCTTAAGACTTTCCGGAGGGGGTACTTTTTCTCCCTCTGTAACTGTTAATGTTACCAGAAATAATTTTGAAC ACCTTATTGTCAATCTTAAGACTTTAGAAGTTAGATGAAGTTCAACACCCCTACTATAATGGTGAAAGTGAAACCACACC CGAAATCTTCAATTCATCTCCTAAGGTCTCAAAGTCCATCATGTTAAGGGTCTCAAAAGTAGTTACAAATGATGCTAGTT GCTAAGAATGGCAAAGAGAGAAAACTATCATAAGAGACTCGTTCACATTAAAGTATAGACTGAAATGTAGCACATATTAT TCTTTCAGAATGGGTGGGTGTGTAATTTCTTGAAATAGAGGCAAGGGGGAGGAGAGTATAAGTTAAGCATCGTTTAGTAG GTAGTATACCCTAAATTATTTGTAAAGTGGAATGATGTTTCAACTTTCAAGTATATATGCAATTTGGTTCTGTTTAGATG GGTTGATCTCATTTTGGTTCTTGAGAAATACTCAACCTGATTCAACCTACAACTGTTCTTTCTATGAATAAAACATTAAT AGGTGGTTTTTGTACTTAGTTTATGGACAGTGGGACGGCTGTAGTTATCAATTGCTTTTCATACTCCGATTAGTTAAATC ATCCCGACTTTCATCTTATGTGTTATTTGTGGTTTCTGTAGCATTCTTAAGCTTGACACTGAAGCTGCTTTGTTCAATCT GTTGGCATTATGTTCTGAGCATCGCTTTATATCTCCATTACTCATCTATTTCAGGTTCAACTGTGTGGCATATTTGCAGC AAATATGGTGGTTTGAAGTGGATGGTGAGATCAACTTTCCACTCCCTGCTGATATTTATACTCTCTCCTTTAGGCTTCAT CTTGGACGGTTTTCCAAGAGGCTTGGTCGGCGTGTATGCCATTATGAACAGACCCATGGTTGGGAGATAAAACCGGTTAG GTTTGAGTTGTCGACTTCGGATGGTCAGCGAGCATCATGCGAATGCTGCTTGGATGATACTGAGCATGATGAGATATATG GCTGTCATAAGCGTGGATGTTGGGTAGATTACAAGGTGGGTGAGTTTCTCGTCACTGAATCAGAACCTACAACTAAAGTT AGATTCTCCATGAAACAAATCGATTGTACACACTCTAAAGGTGGGCTTTGTGTAGATTCTGTATTTATTATACCTAGTTG TTTGAGAGATCGTAAGAAAAGCGGCTTTTTGAAGTAACCACACACAGGATAGTTTTTTTTTTTCTTTTCATGTCAGACAT CCCAGAAAGCTCGAGGAGGATCTACTATACCGCTTACACCTGTGAAGGAAATTAAGAATATGGAATGGAGGATGTTATAG TTTGTTGGGATTTCTTATATTCTTTAATCTTTTCTGCAGTTGGTTTGTGTGCTCTGTAGTTTTTCTGTAATCACAATTTG CTTTGTCAGATGAGATTGATAAAGAAGCTGTAAAACTTTGGCTGCTCTGTTCCTTCTGTGACATAGTTGTAATACATAGT AGTTCTTCCTCACCTGATAATACTCCATTTGATAAACGAATTTTACATGTAGTGAGGGTTGCATGTAGTTCGCAGTGAAG ATGTTTAGTTCCCTTTATGCTGTCACTGCAAATGTAAATGTAACAATATCAATGTCATTCTCAAATCTCAATGGATTGTA TGCTGGTATGCTCAACTGATTGCCTTGAAAATTAAAGGAGTTTAGATGGTATAGTTTGTGTGTTTGTTTTCTTATTCTCA ATAAATATTTGGA
CDS sequence (LotjaGi1g1v0681500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGCCTCGCTGTCGAACCTTGGAACCAAAGGTTCGACCATCGGTCCCGGCCTCGGGGACATCCCGGAGAATTGCGT CGCTCGCGTTTTTCTTCACCTCACTCCGCCCGAGATTTGCAACTTGGCCCGCCTCAACCGCGCCTTCCGCGGCGCTGCCT CCGCCGATTCGGTTTGGGAAACCAAGCTTCCCAGCAACTACAAGGATCTGCTCCACGCGCTGCCGCCTGAACGGTTCCAG AATCTCTCTAAGAAGGACATTTTCGCCCTCCTCTCTCGTCCGCAACCCTTCGATGATGGTAACAAGGAAGTGTGGTTGGA TAGGGTTACGGGAAGGGTTTGCATGTCCATTTCGGCAAAAGCCTTGTCAATTACTGGAATTGATGACCGGAGATACTGGA CTTGGGTTCCTACTGAAGAATCTAGGTTCAACTGTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGTGAG ATCAACTTTCCACTCCCTGCTGATATTTATACTCTCTCCTTTAGGCTTCATCTTGGACGGTTTTCCAAGAGGCTTGGTCG GCGTGTATGCCATTATGAACAGACCCATGGTTGGGAGATAAAACCGGTTAGGTTTGAGTTGTCGACTTCGGATGGTCAGC GAGCATCATGCGAATGCTGCTTGGATGATACTGAGCATGATGAGATATATGGCTGTCATAAGCGTGGATGTTGGGTAGAT TACAAGGTGGGTGAGTTTCTCGTCACTGAATCAGAACCTACAACTAAAGTTAGATTCTCCATGAAACAAATCGATTGTAC ACACTCTAAAGGTGGGCTTTGTGTAGATTCTGTATTTATTATACCTAGTTGTTTGAGAGATCGTAAGAAAAGCGGCTTTT TGAAGTAA
Protein sequence (LotjaGi1g1v0681500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGASLSNLGTKGSTIGPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASADSVWETKLPSNYKDLLHALPPERFQ NLSKKDIFALLSRPQPFDDGNKEVWLDRVTGRVCMSISAKALSITGIDDRRYWTWVPTEESRFNCVAYLQQIWWFEVDGE INFPLPADIYTLSFRLHLGRFSKRLGRRVCHYEQTHGWEIKPVRFELSTSDGQRASCECCLDDTEHDEIYGCHKRGCWVD YKVGEFLVTESEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPSCLRDRKKSGFLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 293 | 293 | 1.4E-156 | – | |
| PANTHER | 1 | 293 | 293 | 1.4E-156 | – | |
| ProSiteProfiles | 16 | 62 | 47 | 9.497 | ||
| SUPERFAMILY | 17 | 72 | 56 | 1.83E-10 | ||
| Pfam | 113 | 282 | 170 | 2.2E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0681500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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