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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0681900 |
| Transcript ID | LotjaGi1g1v0681900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein, putative; TAIR: AT2G36640.1 embryonic cell protein 63; Swiss-Prot: sp|Q9SKP0|ECP63_ARATH Late embryogenesis abundant protein ECP63; TrEMBL-Plants: tr|A0A072U4L9|A0A072U4L9_MEDTR 35 kDa seed maturation protein, putative; Found in the gene: LotjaGi1g1v0681900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124926884..124928754) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTTTCCTCCCATGCATATATCATCCACCACCACTCTGCTATTCCTTCACCACACTACCACATTCCAATCAACAAAA TCTCAAAATTCCATCTGAAACTCGTTACAATCATCAAAACTCCACAAACATCATTCAATGGCGTCAAGTCAACAACCATT CAAGGGAGACAGAGCTGAGGCAGCCGCCAAGCTCGCCGCCAAAGACATCGGCGATATCAACCGAGCTAATGAGCGAGACG AAGGGTTTTCCCTCAACAAAGAAGCTAACTTCAAGCAGGCACGAGCTGAGGCAGCTGCGAAGCTCGCCGCTAAGGATCTT GAAGACGTGAACAGAGCCAGAGACGCCGCATTTGGCAGCGGTGGCGGTGCTTCCGTAGAGTACCAGAACCAGCAGAGACC TGGTGTCATCGGGTCCATGTTCAAGGCTGTGCAGGACACTGTTGTGCACGCCAAGGACGCTGTCGTCGGAAAAAGTTATG AAACCGGGGATGTTAGAGGCAGAGCAGGGGAAACAGGGTCCAAAATGGGAGAATACACAGATTATGGTGTTCAGAAGGCA AGGGAAACAAACGAGGCGGCGAAACAGAAAACTGGTGAGTATGCTGATTATGCTTCTCAGAAAGCAAGAGAAACCAGAGA CACCACGGTGAACAAAACAGGGGAATATACAGATTATGCTGCAGATAAGGCGAAGCAAGCAAAGGACACAACAGTGAACA AAGCTGGAGAGTACACGAATTATGCTGCTGAGAAAGCGAAGGAAGCTAAGGATGCGACGATGAATAAGGCTGGGGAATAC ACAAACTATGCTGGAGAGAAGGCGAAGGAAGCTAAGGATGCAACAATGAATAAGGCAGGAGAGTACACGAACTATGCTGG AGAGAAGGCGAAGGAGGCGAAGGATGCTACGGTGAATATGGCAGGGGCAGCCAAAGACACGACAGTGCAGAAAGCAGGGG AAGCTAAGGATTACACTGCTCAGAAGGCGAAAGAAGGGAAGGACGCGACGGTGGGGACGCTTGGGGGGCTGAAGGACTCT GTTATGGGTTTCTTCACTGGGAAGAAAGATGAAACTGCAGAGAAAGCTGTGGAGGCAAAGGATAGGACAAAGGTTGCAAC TTACAACTTTGCATTAACTATCATTGCTTTGTATGATTAGTTACTATTCCATTTGATTTGTTTGATTAATTACATACGGT TGGGATCAATGATGATAATATTGGTGTGTGATGCAGGACATGCTGAGCGGGTCAATGGAGGGAGACTCGAGGAGGAGAAT GGAAGAGCTGAGGGTGCAAGAAGGAGGGCGGGGTGGAGAGAAAGTGGTGGTGAGAATGGAAGAGTCCAGGCCAGGGGTGG TGGCGGATGCTCTCAGAGCTGCGAATGAGAGTATCAGTGATAAGGGAGCATTGGATGAAGAAGGTGTCATTCATGTGGAG CGTCGTCGTGAGAAAATGTGACAAGATAAAGAGATGATCGTGTAATGTAAAGTTGTGTACTGGTTAATAAGTTTACTGCA TTACTAGTTTACTATGATGGAGATGTGTTTTGTAATAATATTTTGTTGCTCTTTTGGGCTGGTTGTTTACTAAATTTAAT CAAATCCCATGTACTTTTCATTGTGTAAAATTGTCCCCTTTATTATGTTTTTGTCACCATTTTCAGTAGTATATAGTTTT TGGTAGGTTTTCATTTGTAAAGAACGCTCTTTTGTGACCTTGTTTTAGGTTATTGGTCCTGACTCTATAATGTAGTGGCA GAATGCATGACAGGTCTAGGCCTTCTTTATATGTTGAGGAGAAAGTACTAGTAGTTTAGGCCCATCTTTCTGTAAGAACT TACTTGGGCTCATAAATTATGATGAAGAAGT
CDS sequence (LotjaGi1g1v0681900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAAGTCAACAACCATTCAAGGGAGACAGAGCTGAGGCAGCCGCCAAGCTCGCCGCCAAAGACATCGGCGATAT CAACCGAGCTAATGAGCGAGACGAAGGGTTTTCCCTCAACAAAGAAGCTAACTTCAAGCAGGCACGAGCTGAGGCAGCTG CGAAGCTCGCCGCTAAGGATCTTGAAGACGTGAACAGAGCCAGAGACGCCGCATTTGGCAGCGGTGGCGGTGCTTCCGTA GAGTACCAGAACCAGCAGAGACCTGGTGTCATCGGGTCCATGTTCAAGGCTGTGCAGGACACTGTTGTGCACGCCAAGGA CGCTGTCGTCGGAAAAAGTTATGAAACCGGGGATGTTAGAGGCAGAGCAGGGGAAACAGGGTCCAAAATGGGAGAATACA CAGATTATGGTGTTCAGAAGGCAAGGGAAACAAACGAGGCGGCGAAACAGAAAACTGGTGAGTATGCTGATTATGCTTCT CAGAAAGCAAGAGAAACCAGAGACACCACGGTGAACAAAACAGGGGAATATACAGATTATGCTGCAGATAAGGCGAAGCA AGCAAAGGACACAACAGTGAACAAAGCTGGAGAGTACACGAATTATGCTGCTGAGAAAGCGAAGGAAGCTAAGGATGCGA CGATGAATAAGGCTGGGGAATACACAAACTATGCTGGAGAGAAGGCGAAGGAAGCTAAGGATGCAACAATGAATAAGGCA GGAGAGTACACGAACTATGCTGGAGAGAAGGCGAAGGAGGCGAAGGATGCTACGGTGAATATGGCAGGGGCAGCCAAAGA CACGACAGTGCAGAAAGCAGGGGAAGCTAAGGATTACACTGCTCAGAAGGCGAAAGAAGGGAAGGACGCGACGGTGGGGA CGCTTGGGGGGCTGAAGGACTCTGTTATGGGTTTCTTCACTGGGAAGAAAGATGAAACTGCAGAGAAAGCTGTGGAGGCA AAGGATAGGACAAAGGACATGCTGAGCGGGTCAATGGAGGGAGACTCGAGGAGGAGAATGGAAGAGCTGAGGGTGCAAGA AGGAGGGCGGGGTGGAGAGAAAGTGGTGGTGAGAATGGAAGAGTCCAGGCCAGGGGTGGTGGCGGATGCTCTCAGAGCTG CGAATGAGAGTATCAGTGATAAGGGAGCATTGGATGAAGAAGGTGTCATTCATGTGGAGCGTCGTCGTGAGAAAATGTGA
Protein sequence (LotjaGi1g1v0681900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSQQPFKGDRAEAAAKLAAKDIGDINRANERDEGFSLNKEANFKQARAEAAAKLAAKDLEDVNRARDAAFGSGGGASV EYQNQQRPGVIGSMFKAVQDTVVHAKDAVVGKSYETGDVRGRAGETGSKMGEYTDYGVQKARETNEAAKQKTGEYADYAS QKARETRDTTVNKTGEYTDYAADKAKQAKDTTVNKAGEYTNYAAEKAKEAKDATMNKAGEYTNYAGEKAKEAKDATMNKA GEYTNYAGEKAKEAKDATVNMAGAAKDTTVQKAGEAKDYTAQKAKEGKDATVGTLGGLKDSVMGFFTGKKDETAEKAVEA KDRTKDMLSGSMEGDSRRRMEELRVQEGGRGGEKVVVRMEESRPGVVADALRAANESISDKGALDEEGVIHVERRREKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 363 | 322 | 1.0E-71 | – | |
| PANTHER | 42 | 363 | 322 | 1.0E-71 | – | |
| Pfam | 134 | 177 | 44 | 1.8E-12 | ||
| MobiDBLite | 145 | 169 | 25 | - | – | |
| Pfam | 178 | 221 | 44 | 3.7E-15 | ||
| Pfam | 222 | 265 | 44 | 1.2E-11 | ||
| Pfam | 260 | 297 | 38 | 7.0E-13 | ||
| MobiDBLite | 316 | 353 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0681900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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