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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0682800 |
| Transcript ID | LotjaGi1g1v0682800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cactin; TAIR: AT1G03910.1 cactus-binding carboxy-terminal, cactin; Swiss-Prot: sp|F4I2J8|CATIN_ARATH Cactin; TrEMBL-Plants: tr|I1JPU2|I1JPU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0682800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125009285..125012876) extracted from Lotus japonicus Gifu genome v1.2.
CAGGCGGAAATTGAAAAAGTGAAAAAGAGAAGAGAAGAAAGGGCACTTGAGAAAGCACAACATGAGGAAGAAATGGTAAG TCCTTTCATGTAAATTTTTATAGTCCATAGCTATTGCGATAATATTAGTTATATTGTATTAGTAATTTTCATTAGTTTAG GCTTTGTACTTGGGGTACTATTTTATACATGACATAATATTAGTGTAAGTAGGAGTGTACACCAGTGTCTGGTATTATTA AGCCTTACTAGTTAAATATGTTCTCTGGTGTCTCCTTTACATCTAATGCTTTAATTCTGATATTTATCATTTTAATCCGT TGGAGGAATTTTTTTTACCTAGCCACTGTAAAATTGTGGCTTTTTTCTAATATGGCATACCAATGACTCCCCTTGTATCA GTATTCACTATTTAGTACTGTCTTTTAAGAGGGCTCCTAGAATTTCAATTCACTCAGGATTTTGTGCCCCACATATAATG GGGATACATAAGAGTAAGCCAAGGCTTGATATAGGTGTTAGATTTTTGATAGCAAAAACTTTGTTATCTTTTTTGGGATT TGACACATTCTTTCTACCAGGCATTGCTAGCCAGAGAACGTGCTCGAGCTGAGTTCCAAGACTGGGAGAAAAAGGAAGAG GAGGTACTGGCCTTGAGTTCCTTTTCATTTGTTGTTATTTAATATAATATAATATAATACTGTCAGTCTGATGACTTTGA CAATTTAATTTGCAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCGAGGCCAAT CGATGTCCTAACCAAGCACCTCAATGGCTCTGATGATTTGGATATAGAAATCAATGAACCATATATGGTCTTCAAGGTAA GTACTTGACTTTTTTTTGTTCTTTTCATTTTATTCCTCTTATCTCTTCAACTATTGTACACATGCTCTGATTACAGATTT CCAGCTTTAAATGATAATATTATTGGACAAATTACATATTGATTTGATACTTGCTTGCTGCAGGGTTTGACTGTGAAAGA AATGAATGAGCTTCGTGATGACATCAAAATGCATCTGGATCTTGACAGGGCAACACCGACCCATGTAAAATATTGGGAGG TATTATCCTGTTTACATTGTCTGGTTTTTGCTTTGTATTAATGTTCAGATTACTTGATCAATATCTTAAACCTCACAAGT CACAACTACACATTCATGATAATTTCAACATGAAATTTGAAGTAAACTGGAGCCTAGTAAACTAACTGAGTTTCGTGATC TTGTCCTTCTCTTGTATTATTTAACTCATATTGTCCTTTTGGTTGGTGGCTTCTTCAAAGCTAAAGACTTACTGTTCAAT GTCTTCATGCAGGCTCTCCTTGTGGTGTGTGATTGGGAGCTAGGTGAAGCTCGAAAAAAAGATGCACTTGATCGAGCTAA GGTGCGTGGTGAAGAACCTCCTGCTGAGCTGCTTGCTGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGA GGCTTTTGCAGGGGAAGACACTTGCAGAGTTGGAGGCCTTACAGCTTCATATTGAGTCAGAGATGCGTACTGGTACAGCA AAGGTGGTTGAGTACTGGGAAGCCATTTTAAAATATCTCGACATATACAAGGCCAAGGTATTCTCCATCACATTCTTCTC ATGTATGTCGGTTACATTCCTTTAAACAATGGTTGTTTGACTGTATTGTTAAATTTCTGAAATACAGGCTTGTTTAAAAG AAATTCATGCTAAAATGTTGCGTAAGCATTTGGAACGCCTTGAGCAGCCATCAGAGGATGAAGATAAGTTGGAGAATGCT CTTGTTCCAATACCTGAGGAGGGAGATGCTGAGGATGATGTTGAAGGTATAAATTTTGTTGTTGTGGTTTAGTTGTCCAT GAAGCAAGTTTTTACTGGCTCAAATTTCATGTTGAACTTTGCTTGATATTTCTTTTTCTTGGTAGTCCGATCTGCAGATG AATCGTTTTCACCAGAGCCCATTAGAGAGAATCAAGAAGCTGAAGATGAGGCTGGATCATTTTCACCCGAACTGTTGCAT GGTGATGATAATGAAGAAGCTATTGACCCTGAAGAGGACAGGGCTATACTGGTACTCTTTTTAAGCATGATTATTAATAG TGAACTCACACTGAAGTTACAAGTATATAGATTATTACTAGTATTTTAGACCGTGCAGTAAAAATAATTTTTAAAGAAAC TTAAGTATATTATAAGAAGTTTAAATAATTAAAAAGGAATTCAAATTTTGTAGAGCACTCTAAGTTATATTATAGAGTTG ATAGCATACCTATGTTGGCACATTTATAGGAGCGGAAACGTTTGGTTGTACTAGAAGAGCAGCAAAGACGAATTCGGGAA ACAATGGCATCAAAACCAGCTCCATCTGAAGATCATTTTGAGATGAAGGCTATAAAAGCTATGGGAGCTATGGAAGATGG AGATGCAGTGTTTGGATCTGGTGCTGAAGTTAACCTCGATTCACAGGTATCATGTCTTGCACACATATATAGCTTATCAC TCTTTGTGGAATAGCATCAGCATGTTGCTCTCCATGATTCTTACAATGTTGAATTTTTCATGGATAGATAAATACAGTGT TAGGATCTAATTATTAGGGATTTAGATTTATTTTATTTTTATCTTTTCAGTTTTATAGTCTATCTTAGGAGATCTTTTAT ATTAGGAGGTTATCTTTTATTTTGGTTAGTTTATCTTCTTTATTTCTTAGGGGTTAAGTTTATCTTCTTAGGATTAATTT ATTATACCTTCCTTAGGTTAGAGTCGTGGATTAAATTATTGAGTTGTGTGACTTGCCCTAGGAGTTAAGCTTCTTATTTA TCCTTTTTTTATTTTTATCTTAATAAAACTGAAAAAATTAAAAATAAAATAAATCCCTAAGAATTAGATCCTAACATATA GCATGAATGTTCTGGATTTTTGGAAGTACTAAGTTGTGGATGGATCATAGAAGAGAGTTTTATCAGAGCTGTTTAAATGT TGTCTTATTGTATCATTTGGTTACTTCTCTTCACTTTTAAAGTTGACACTAAAGGTAGTGAATACACTTGGTATAATTTG GTAGTTTAAGGAGTAATAAAAATTGGTTATCTATATTCTCCTCATCTTTTAAAGTTCCTGATGTGATTCATAAATGTTGG AGCAGGTCTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTACTTCAACCGTGTTCACACTGGATATGAGTGG AACAAATATAATCAGACTCACTATGACCATGACAACCCACCCCCAAAGATTGTGCAAGGTTACAAATTCAACATTTTTTA TCCTGATCTTGTTGATAAGATAAAAGCCCCAACCTACTCCATTGACAAGGATGGCAGCAATGGAGAGACTTGCATCATAA GATTCCATGCAGGGCCACCATATGAGGACATAGTAAGTTTGTTGTTTTTGATGTTTTGAGAGATTTTGAATTTCCAATTA CTTTACTTATTTTCTTGTGTTTCCATGACAGGCTTTCCGCATTGTTAACAAGGAATGGGAGTATTCTCATAA
CDS sequence (LotjaGi1g1v0682800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTGCTAGCCAGAGAACGTGCTCGAGCTGAGTTCCAAGACTGGGAGAAAAAGGAAGAGGAGTTTCATTTTGATCA AAGCAAAGTTAGGTCAGAGATTAGATTGCGTGAAGGGCGTGCGAGGCCAATCGATGTCCTAACCAAGCACCTCAATGGCT CTGATGATTTGGATATAGAAATCAATGAACCATATATGGTCTTCAAGGGTTTGACTGTGAAAGAAATGAATGAGCTTCGT GATGACATCAAAATGCATCTGGATCTTGACAGGGCAACACCGACCCATGTAAAATATTGGGAGGCTCTCCTTGTGGTGTG TGATTGGGAGCTAGGTGAAGCTCGAAAAAAAGATGCACTTGATCGAGCTAAGGTGCGTGGTGAAGAACCTCCTGCTGAGC TGCTTGCTGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACTTGCAGAG TTGGAGGCCTTACAGCTTCATATTGAGTCAGAGATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAAGCCATTTT AAAATATCTCGACATATACAAGGCCAAGGCTTGTTTAAAAGAAATTCATGCTAAAATGTTGCGTAAGCATTTGGAACGCC TTGAGCAGCCATCAGAGGATGAAGATAAGTTGGAGAATGCTCTTGTTCCAATACCTGAGGAGGGAGATGCTGAGGATGAT GTTGAAGTCCGATCTGCAGATGAATCGTTTTCACCAGAGCCCATTAGAGAGAATCAAGAAGCTGAAGATGAGGCTGGATC ATTTTCACCCGAACTGTTGCATGGTGATGATAATGAAGAAGCTATTGACCCTGAAGAGGACAGGGCTATACTGGAGCGGA AACGTTTGGTTGTACTAGAAGAGCAGCAAAGACGAATTCGGGAAACAATGGCATCAAAACCAGCTCCATCTGAAGATCAT TTTGAGATGAAGGCTATAAAAGCTATGGGAGCTATGGAAGATGGAGATGCAGTGTTTGGATCTGGTGCTGAAGTTAACCT CGATTCACAGGTCTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTACTTCAACCGTGTTCACACTGGATATG AGTGGAACAAATATAATCAGACTCACTATGACCATGACAACCCACCCCCAAAGATTGTGCAAGGTTACAAATTCAACATT TTTTATCCTGATCTTGTTGATAAGATAAAAGCCCCAACCTACTCCATTGACAAGGATGGCAGCAATGGAGAGACTTGCAT CATAAGATTCCATGCAGGGCCACCATATGAGGACATAGTAAGTTTGTTGTTTTTGATGTTTTGA
Protein sequence (LotjaGi1g1v0682800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMNELR DDIKMHLDLDRATPTHVKYWEALLVVCDWELGEARKKDALDRAKVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTLAE LEALQLHIESEMRTGTAKVVEYWEAILKYLDIYKAKACLKEIHAKMLRKHLERLEQPSEDEDKLENALVPIPEEGDAEDD VEVRSADESFSPEPIRENQEAEDEAGSFSPELLHGDDNEEAIDPEEDRAILERKRLVVLEEQQRRIRETMASKPAPSEDH FEMKAIKAMGAMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNI FYPDLVDKIKAPTYSIDKDGSNGETCIIRFHAGPPYEDIVSLLFLMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 441 | 441 | 6.3E-283 | – | |
| PANTHER | 1 | 441 | 441 | 6.3E-283 | – | |
| Pfam | 6 | 203 | 198 | 1.3E-57 | ||
| MobiDBLite | 215 | 229 | 15 | - | – | |
| MobiDBLite | 215 | 281 | 67 | - | – | |
| MobiDBLite | 244 | 277 | 34 | - | – | |
| SMART | 354 | 447 | 94 | 2.2E-40 | – | |
| Pfam | 354 | 440 | 87 | 1.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0682800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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