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LotjaGi1g1v0684800.1

Overview

Field Value
Gene ID LotjaGi1g1v0684800
Transcript ID LotjaGi1g1v0684800.1
Lotus japonicus genome version Gifu v1.2
Description PWWP; TAIR: AT3G05430.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1; TrEMBL-Plants: tr|I1NAE0|I1NAE0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125172650..125177720) extracted from Lotus japonicus Gifu genome v1.2.

CATACACATGCTAAAATTGAGATTGAAATAATCATTCTTGTATAAAAAAATTGACCACTTTCAAAAACTCATTCATTTCA TATTTTTTCACACACTTAATGAAATTTCATGCTAACACATTCTAAATGTAATTATTGAGCTTTCAATCATACACAATTCA AGAAAATAATAAATATATCACAATCAATTACAAAAATTAAAAACAGCTTGAATATGGTTTTACTTACTATGTTTCAGAAA CATCTCCAGTGGCAGTGTTGCCATGATGATATTGCCTGTCTGTATTTTGGTATGTAGCAAACTAGTATTTTGGAATGAAT GAATTGTACAAACTCTAGAAGAATTCCCAAATCCATGTAATAAACGAATCTCACAAACTCAAAGTTTCAATCTTTATTAT GGCCCCATTATAATAACTTGCAATTCCACGCCGTCAATGCTATCAGAAGCAGATTGTCTTCTTCTTCTCCTGGTTTTCCC CCTTTTCCTCTTCTAGGGTTTGCTGATTCTCTTCTTCTTGCTCCACCAATGGCCAAGAAGAGGAATGCCCAGATGGTTGA TTGTATGCCCAAGCATTCTCAACAACCCAGAAGCTCTCCTCCTCCCAAACGCCGCACTGATTTCTCCGTCTTCGCCTCCA CCCCTCATCCTGGTATGGCCTTCTCTCAATTTCCTCCATTCCTATTCCCAATTGCATATGCCAGTCTTTCTTCAATTTGT TCTGGTTGTGAAATTTGATGAATCTTCAATTTGTCATTTTTTTTGTGGTTGGTTGTGGGGATCATTGTGGTTTAAAGAAT GTTTTTTTGCTTCTGGGTATTGGGCAATTGGCATTGTAGAATGTATATTTGTCACAAAGTTTTGAACTTGATGTGTTTCT GTTTGGATCCAACATGTTGTTGCTTATTAATCAATTGTCAACTATTGCTGCATAGGTAGTGGTAGCTTTCATTTAGAATC ACTATCTTTTGTGCTTTTTTGTTCGATGCATCTGAAATCGAGTTGAATTGTCAACCTTTTCATAGTTAGACAAGCAATGC TTCTTGGAATTACAAAATCCCATTAATCAGCACACCTTCATAGATGGAATAGTATTTGTTCTTCTTCTAAAAATTTTCAG GATGATAGTTTGTAAGCATTCACCCGTTTAATTCTACAGAACTTTGAGGTGTTTGAATGGTTGAGCTATAACAATGTAGT TTAGTGCTTGTTGCTTTGATAGGTTTGCATGACTATGGAATGGGTTCATAATTTTGTAAGCATGCTAAATGGTTTGGTGC ATCCTCAAATTATTTATAACAATGCTTTAGCCTCCAGCTATTCATATTTATGTTCGGGGAATAGTTTACAATGGGAATTC TGTTCCATAGGCAGATACTGGACACTCGTAGAATTTGACTGTTGGACCTTGTCTTTTACAATCCATGTGCGTGCCTCAAC CTTTTGAAGTTAAGTGCCTCCCTTGAGCTTTTCTGAAAGACCTTGTTAAAATTTTGAAAGATTTAATTGAGCTTTGTTGT TTGGATTGATACGACTTCAATGGAGCTAAGTTTATAGATACGCTAATCTAAAACTGTGTTGTTAATGTTGGTGTTCTCAA GCATGGACCATTGGCAAACGGTTCGTTGCACTTCCTCAAACATCTCACTTTATGTAACATTGGATTAGAATTGAATTACG TGTTCCATTGGGGTTAAAGTCTAGGATCCATCTGCTAGAGCAGCATTTGATTGAATGTTATTGACACATATGGCTGATCT TTCATCTGACCAATTCTTTCATGCAGATTCCTCGCCAGGTTCATCTTCTGGTGAGATAACATTGTCTAGTGTCACTGCAA GCAGTTTGCAGGAGAGGACATCAACAGGGAATCTATTTTCTGATGATACGTTGGTTCGATGCAGTAATTACCAACACGGT AAACCAGTGTGTTCATCTGAATCTTCTGATGTTCCAGCTGTGGAAGTTGATTCAGTGGTAAAAGATGAAGGTCTCGACCA CAGTGTAAATAGGTTTGTTCTGTAATGGCATCCTACCGCAAATAAGTTGAGTTTTAGACCTTTCAGTTTTGTTGTTTCTG ACTAGACTGTAACTTCAAGTTTCTTGTTTCTAAATAGGGATTCTTGTGATGAAAAAATTGATATTTTCAAGACTTTAGAA TCTACCCCTCGCGACTCATCTGACAGTGATAGCAGTTCCCTTGCTGTAACCCCTGGAAGTGTCGTGTGGGCAAGAACAGC TGGTGAAATCTGGTGGCCTGCTGAGGTATTTACTTTTGGATTTTATTGGTTTTGCGTCTATCTTAGTGCTTGTGCATAGG CCAATATGACATGTGATTGGATGAAAGGGATTCATAGTTACAACTTACAACATCCACCCTCGTTTACTTGAATCTGATGT ATCGTTTTGGCAAGTGTACCAAATTGTATATTAGTAATAAAAAGTTATCGACTGCAGGGATTATGTTCTTAAGATCTAGT TTGCTAGATTAATTTTTTGGAGTAACTGAAACATTGATTTCACTGTGACGACTTTGAAATTGCTAAAGTTTTAAATGAAA TTTAGAACAGAATTCAAGTACTAAAATATGTTATAGGAATGGTTTCATTACTTCTCTTACTTGTTCCTCGCCTTGAGATT TAACATGATACTTCAAATATTTCAAGGAGCTTTGTGATGAGCTTAACTATCCCTATAGACCCTAATCTTTTTATTTTTCA AATTTCATAACCCCGTCATTTATATTAATTAAAAATATTACTTTTCCAGATCATGGAAGAAAGACCTGCATTATCTGACC CTGTCAGTGATGGACATGTTTTAGTGCAGTTTTATGGAAATAATCCCAGGTATTCTATTTTTTTCTACATGGGAGTTTCT TGGATTTTCCTAACCATGTACTGAATCACACTTTGTTGCTTTACACTTTACAGTGCTTGGGTTGATCCAGTCACAGATAT TTCAACCTTTGAGGATGTGAGTTCAATCCTTGTCTTGCACTCCGCTTTTGCAGATATAAGTTTTGGGTGTTAAGTAGTCT CTAGCTTGTATTTACATTTTGATAACATTTAATATCTGAGTAAAGCCGTGCTAGAAGAGGGAGTAGGTAGAATACCTCAT CCTCAACCTTAAAGGATGAAAGAAGAGGGCAAAGAGAGGCTTATTTTGACTAATTTTAATTTTGCAAAGATGTTGCTCAG CAGTTGGTCTCCCAACTTCTGTAGTGGACCATCAAAAAAGTGTTTTACAGAGCGTACTGTGAATTTCAACATTTGTATAG GAGATAGTTCTATGGCTCTCTGCAAATAATATGTGTATATGTGTCGTCATTGTCTCATGTCTGCGGATGGAATTTTGTTT TGCAGTCTTTTGAAGAAAGGAGCAACAATCCTTCAAAAGATTTTCAAGAGGCTCTAAAGCAAGTATGTTTAATCTAAAGC AAGAATTCAGGATGTTTTGGCTCCAATTAATTTTACAATTTCAGCCAGCAGAACTTGTATTTTATCTATACTCATTTCCC CCTCTTCTTTTCTTGCTAATTTTTTTCATTTGTCTCTTATTGGATGTGATACTAGGCCTTACAGAGGAAGGCACAACTTA GTTCTTGCCGAAAATTGAGTCCTGATAGGTCTGCTCACTCTGATCAGCAAGAACGATCATCTGGTATGTTATTGATTTCT ACACAAAATCATGTTTTGACAGTGAAATGGGTCAGAACAGGAAGTTACATCACTGAATCCTATGTCTGCATAAACACTTA GTAAATAAGAACCTGTTTTATATCAGTGCATTAGTGGAACTTCATTTTCAACCAAAAGTAGTAATGCTCCAATCTTTTTT GTACAATGAAAACCTCTTGTCCAGTAGACCCCTTTTGTCTTGATTGGATTATCTTCTTTAGCTAAGCACTTGAATTTTGT TAAATAGAAATAGCAGATCCAATTTTTTTGTATCCGAAGCATATAGACATTATATACACCTACTGGATACTGCTTCATGT ATTCTTCTTACTATGAATGTCATTGAAACTTGAAAGATACAACTCTCCATTGACAAGCTTATTACTATATTCATTTCTCT TTCTCCCTTTTGGATTTATGGTTTGATTGTTTGAACAGGTAAATGCACTTCAGCTAGCTCAAGCAGAACAGTTGATGATC AAGAGAGACGAAGAGGGCAAAGGAAACGTAAACCCAAAGTTCATTTTGATGTGAGTTTAGTTAGTTAGTTATGGTCTGAT CACTATTGTAACTTATTTTGTCACGGGCTTACAATTAACTAATTCTCTCCTAGGAGGCGACATGTTCGATGAAACCAGAA AAAAGTGCTCGGCGGTTAAAGATAATGCGGTATCTCGGCCTTGCTCCTCCTGTTGGTTCTCCTTTTTGATCGTGATCAGA GTAATGTACATTAAATGTTTGCGGCCAAACAGCATATAGTTGGTTCTCTTATTAATTTTGTTGTCAAAAAGAAATGCTAG CAAAATACTCTTTTAAATACACTCTTAAACTCACTTCATGTGATTGGTCTTATTTTTAAAAAGTCGTCCATTTATGGGGT AAGCGTGACTTTTTTTTATTAAAAAAAGGACCTATCATATCAAGTATCTGGAAGAGTGTGTTCAAAAGAGAGTGTTGCTA ATCGTAAGTGCATATTAGAAAGTTTTGTTTTGACTCCTAGCCATTAACTTTGTAACACTTTTCAGGATTATTTGGTTTCG TTTATTTCATTTTTATCTGTTAAAACCATATGACAATTAGAAGGAACGTCGGATTTCAATGAATCAGTGAATAAATGATT GATCTCTTGGCCAGCTATCACTTTTATTTCATGCGCCAACGGGCACATGGGTGTGCATTCGAACATCCAACCTCTGAAAA ATGGACAGCACTTCGTAGTGCACTATAGTTTAAAAAATGTTCACTCCATGCTTCACAATACGTGTAACAGTTATTTACCA AGCAAGACTTATAGTTCATGATTTAATCCCTGCCTATGTTGCTTTGAATTCAGCGGTTCAGGGAGATATTTAGAATTCAT CTTCTGAGCAACATTGGTTGTGTCCTGATCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0684800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAAGAAGAGGAATGCCCAGATGGTTGATTGTATGCCCAAGCATTCTCAACAACCCAGAAGCTCTCCTCCTCCCAA ACGCCGCACTGATTTCTCCGTCTTCGCCTCCACCCCTCATCCTGATTCCTCGCCAGGTTCATCTTCTGGTGAGATAACAT TGTCTAGTGTCACTGCAAGCAGTTTGCAGGAGAGGACATCAACAGGGAATCTATTTTCTGATGATACGTTGGTTCGATGC AGTAATTACCAACACGGTAAACCAGTGTGTTCATCTGAATCTTCTGATGTTCCAGCTGTGGAAGTTGATTCAGTGGTAAA AGATGAAGGTCTCGACCACAGTGTAAATAGGGATTCTTGTGATGAAAAAATTGATATTTTCAAGACTTTAGAATCTACCC CTCGCGACTCATCTGACAGTGATAGCAGTTCCCTTGCTGTAACCCCTGGAAGTGTCGTGTGGGCAAGAACAGCTGGTGAA ATCTGGTGGCCTGCTGAGATCATGGAAGAAAGACCTGCATTATCTGACCCTGTCAGTGATGGACATGTTTTAGTGCAGTT TTATGGAAATAATCCCAGTGCTTGGGTTGATCCAGTCACAGATATTTCAACCTTTGAGGATTCTTTTGAAGAAAGGAGCA ACAATCCTTCAAAAGATTTTCAAGAGGCTCTAAAGCAAGCCTTACAGAGGAAGGCACAACTTAGTTCTTGCCGAAAATTG AGTCCTGATAGGTCTGCTCACTCTGATCAGCAAGAACGATCATCTGGTAAATGCACTTCAGCTAGCTCAAGCAGAACAGT TGATGATCAAGAGAGACGAAGAGGGCAAAGGAAACGTAAACCCAAAGTTCATTTTGATGAGGCGACATGTTCGATGAAAC CAGAAAAAAGTGCTCGGCGGTTAAAGATAATGCGGTATCTCGGCCTTGCTCCTCCTGTTGGTTCTCCTTTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0684800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKKRNAQMVDCMPKHSQQPRSSPPPKRRTDFSVFASTPHPDSSPGSSSGEITLSSVTASSLQERTSTGNLFSDDTLVRC SNYQHGKPVCSSESSDVPAVEVDSVVKDEGLDHSVNRDSCDEKIDIFKTLESTPRDSSDSDSSSLAVTPGSVVWARTAGE IWWPAEIMEERPALSDPVSDGHVLVQFYGNNPSAWVDPVTDISTFEDSFEERSNNPSKDFQEALKQALQRKAQLSSCRKL SPDRSAHSDQQERSSGKCTSASSSRTVDDQERRRGQRKRKPKVHFDEATCSMKPEKSARRLKIMRYLGLAPPVGSPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 68 68 - –
MobiDBLite
mobidb-lite
12 26 15 - –
MobiDBLite
mobidb-lite
36 68 33 - –
PANTHER
PTHR10688:SF1
72 317 246 1.3E-59 –
PANTHER
PTHR10688
72 317 246 1.3E-59 –
Gene3D
G3DSA:2.30.30.140
138 240 103 2.0E-16 –
SUPERFAMILY
SSF63748
147 243 97 7.82E-18 –
Pfam
PF00855
148 229 82 9.5E-14
IPR000313
ProSiteProfiles
PS50812
149 196 48 11.798
IPR000313
MobiDBLite
mobidb-lite
233 293 61 - –
MobiDBLite
mobidb-lite
266 293 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0684800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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