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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000313
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 54 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.364s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062699.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX4-like [Glycine max] gi|356518627|ref|XP_003527980.1| chr0 21108503 21118988 -
3 domain predictions
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Lj0g3v0161639.1
n.a. PWWP domain-containing protein [Arabidopsis thaliana] gi|15228467|ref|NP_186964.1| chr0 76065749 76067061 +
3 domain predictions
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Lj0g3v0166999.1
n.a. PREDICTED: histone-lysine N-methyltransferase NSD2-like isoform X1 [Cicer arietinum] gi|502090535|ref|XP_004489260.1| chr0 79410841 79414152 +
4 domain predictions
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Lj0g3v0173129.1
n.a. Serine/threonine protein kinase ATM [Medicago truncatula] gi|357440855|ref|XP_003590705.1| chr0 83219748 83222889 -
4 domain predictions
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Lj0g3v0249369.1
n.a. PREDICTED: histone-lysine N-methyltransferase NSD3-like isoform X1 [Cicer arietinum] gi|502133053|ref|XP_004501633.1| chr0 129211397 129217898 +
3 domain predictions
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Lj0g3v0339729.1
n.a. Serine/threonine protein kinase ATM [Medicago truncatula] gi|357440855|ref|XP_003590705.1| chr0 178001756 178006546 +
4 domain predictions
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Lj0g3v0339729.2
n.a. Serine/threonine protein kinase ATM [Medicago truncatula] gi|357440855|ref|XP_003590705.1| chr0 178001756 178006488 +
4 domain predictions
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Lj1g3v3139990.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] gi|356568903|ref|XP_003552647.1| chr1 35825583 35835601 -
4 domain predictions
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Lj1g3v3642070.1
n.a. PREDICTED: histone-lysine N-methyltransferase NSD2-like isoform X1 [Cicer arietinum] gi|502090535|ref|XP_004489260.1| chr1 41929701 41933225 -
4 domain predictions
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Lj1g3v4680330.1
n.a. PWWP domain-containing protein [Arabidopsis thaliana] gi|15229988|ref|NP_187194.1| chr1 55468253 55474794 +
3 domain predictions
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Lj1g3v4921070.1
n.a. PREDICTED: microtubule-associated protein futsch-like [Cicer arietinum] gi|502113298|ref|XP_004494605.1| chr1 59828965 59834042 -
4 domain predictions
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Lj1g3v5034780.1
n.a. PREDICTED: histone-lysine N-methyltransferase ATX3-like [Cicer arietinum] gi|502113957|ref|XP_004494815.1| chr1 61526566 61539647 -
4 domain predictions
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Lj2g3v0970440.1
n.a. PREDICTED: histone-lysine N-methyltransferase NSD2-like isoform X1 [Cicer arietinum] gi|502090535|ref|XP_004489260.1| chr2 15129673 15133199 +
4 domain predictions
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Lj2g3v2124820.1
n.a. PWWP domain-containing protein [Arabidopsis thaliana] gi|15228467|ref|NP_186964.1| chr2 32009435 32014084 +
3 domain predictions
 –
Lj3g3v0290530.1
n.a. RecName: Full=Uncharacterized protein At1g51745] gi|357529063|sp|P59278.2|Y1745_ARATH chr3 2085010 2089716 -
3 domain predictions
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Lj3g3v2706660.1
n.a. RecName: Full=Uncharacterized protein At1g51745] gi|357529063|sp|P59278.2|Y1745_ARATH chr3 33094206 33098294 +
3 domain predictions
 –
Lj3g3v2707720.1
n.a. RecName: Full=Uncharacterized protein At1g51745] gi|357529063|sp|P59278.2|Y1745_ARATH chr3 33103229 33107997 +
3 domain predictions
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Lj3g3v3513720.1
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42837096 42853589 -
4 domain predictions
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Lj3g3v3523870.1
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42916648 42932803 -
4 domain predictions
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Lj3g3v3523870.2
n.a. PREDICTED: ENHANCER OF AG-4 protein 2-like, partial [Cicer arietinum] gi|502144948|ref|XP_004505806.1| chr3 42925852 42932803 -
4 domain predictions
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Lj5g3v0616320.1
n.a. DNA (cytosine-5)-methyltransferase 3B [Medicago truncatula] gi|357455297|ref|XP_003597929.1| chr5 8237540 8239997 +
4 domain predictions
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Lj5g3v0962480.1
n.a. PREDICTED: HUA2-like protein 3-like isoform X1 [Cicer arietinum] gi|502115541|ref|XP_004495229.1| chr5 14619907 14636657 +
4 domain predictions
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Lj5g3v1496780.1
n.a. DNA (cytosine-5)-methyltransferase 3A [Medicago truncatula] gi|357511943|ref|XP_003626260.1| chr5 21733874 21735392 -
4 domain predictions
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Lj6g3v0184180.1
n.a. Serine/threonine protein kinase ATM [Medicago truncatula] gi|357440855|ref|XP_003590705.1| chr6 1804431 1806696 -
4 domain predictions
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LotjaGi1g1v0284200.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT5G53430.1 SET domain group 29; Swiss-Prot: sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5; TrEMBL-Plants: tr|I1JYS9|I1JYS9_SOYBN Histone-lysine N-methyltransferase; Found in the gene: LotjaGi1g1v0284200 LjG1.1_chr1 69176904 69188234 -
3 domain predictions
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LotjaGi1g1v0347600.1
n.a. PWWP-like protein; TAIR: AT3G05430.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q6NUJ5|PWP2B_HUMAN PWWP domain-containing protein 2B; TrEMBL-Plants: tr|I3T7X9|I3T7X9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0347600 LjG1.1_chr1 81580975 81592014 +
3 domain predictions
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LotjaGi1g1v0529500.1
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105619940 105654969 -
4 domain predictions
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LotjaGi1g1v0529500.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105622284 105654909 -
4 domain predictions
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LotjaGi1g1v0529500.3
n.a. Histone-lysine N-methyltransferase; TAIR: AT1G05830.1 trithorax-like protein 2; Swiss-Prot: sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2; TrEMBL-Plants: tr|A0A151TCT2|A0A151TCT2_CAJCA Histone-lysine N-methyltransferase ATX2; Found in the gene: LotjaGi1g1v0529500 LjG1.1_chr1 105628474 105654797 -
4 domain predictions
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LotjaGi1g1v0608200.1
n.a. Serine/threonine-protein kinase ATM; TAIR: AT3G27860.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A0B2SET0|A0A0B2SET0_GLYSO Serine/threonine-protein kinase ATM; Found in the gene: LotjaGi1g1v0608200 LjG1.1_chr1 115262091 115271943 -
4 domain predictions
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LotjaGi1g1v0684800.1
n.a. PWWP; TAIR: AT3G05430.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1; TrEMBL-Plants: tr|I1NAE0|I1NAE0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0684800 LjG1.1_chr1 125172650 125177720 -
3 domain predictions
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LotjaGi1g1v0729800.1
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149151 130159204 -
4 domain predictions
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LotjaGi1g1v0729800.2
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149151 130159204 -
4 domain predictions
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LotjaGi1g1v0729800.3
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JNS1|I1JNS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0729800 LjG1.1_chr1 130149179 130159193 -
4 domain predictions
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LotjaGi1g1v0771800.1
n.a. PWWP domain-containing family protein; TAIR: AT5G27650.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1; TrEMBL-Plants: tr|K7MZX8|K7MZX8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0771800 LjG1.1_chr1 134438354 134443805 -
4 domain predictions
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LotjaGi2g1v0244700.1
n.a. Serine/threonine-protein kinase ATM; TAIR: AT3G27860.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|K7MFP9|K7MFP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0244700 LjG1.1_chr2 70935186 70938971 +
4 domain predictions
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LotjaGi2g1v0448300.1
n.a. Tudor/PWWP/MBT superfamily protein; TAIR: AT3G03140.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745; TrEMBL-Plants: tr|K7LMH1|K7LMH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0448300 LjG1.1_chr2 94217824 94222861 +
3 domain predictions
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LotjaGi3g1v0023300.1
n.a. Tudor/PWWP/MBT superfamily protein; TAIR: AT3G21295.2 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745; TrEMBL-Plants: tr|A0A0L9T9Z0|A0A0L9T9Z0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0023300 LjG1.1_chr3 2574086 2579520 -
3 domain predictions
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LotjaGi3g1v0394900.2
n.a. Histone-lysine N-methyltransferase; TAIR: AT3G61740.2 SET domain protein 14; Swiss-Prot: sp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX3; TrEMBL-Plants: tr|A0A151SIL1|A0A151SIL1_CAJCA Histone-lysine N-methyltransferase; Found in the gene: LotjaGi3g1v0394900 LjG1.1_chr3 79460910 79470626 -
4 domain predictions
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LotjaGi3g1v0428100.1
n.a. Tudor/PWWP/MBT superfamily protein; TAIR: AT3G21295.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745; TrEMBL-Plants: tr|A0A0L9T9Z0|A0A0L9T9Z0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0428100 LjG1.1_chr3 83935581 83940461 +
3 domain predictions
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LotjaGi3g1v0528900_LC.1
n.a. Hepatoma-derived growth factor-related protein 2; TAIR: AT5G23150.2 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|Q9XER9|HUA2_ARATH ENHANCER OF AG-4 protein 2; TrEMBL-Plants: tr|A0A151TMW5|A0A151TMW5_CAJCA Hepatoma-derived growth factor-related protein 2; Found in the gene: LotjaGi3g1v0528900_LC LjG1.1_chr3 94554073 94570781 -
4 domain predictions
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LotjaGi3g1v0528900_LC.3
n.a. Hepatoma-derived growth factor-related protein 2; TAIR: AT5G23150.2 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|Q9XER9|HUA2_ARATH ENHANCER OF AG-4 protein 2; TrEMBL-Plants: tr|G7JPI0|G7JPI0_MEDTR Enhancer OF AG-4-like protein, putative; Found in the gene: LotjaGi3g1v0528900_LC LjG1.1_chr3 94561140 94570569 -
2 domain predictions
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LotjaGi3g1v0538000.1
n.a. Tudor/PWWP/MBT superfamily protein; TAIR: AT3G03140.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745; TrEMBL-Plants: tr|K7LMH1|K7LMH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0538000 LjG1.1_chr3 95455390 95459339 +
3 domain predictions
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LotjaGi3g1v0538000.2
n.a. Tudor/PWWP/MBT superfamily protein; TAIR: AT3G03140.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|P59278|Y1745_ARATH Uncharacterized protein At1g51745; TrEMBL-Plants: tr|K7LSJ6|K7LSJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0538000 LjG1.1_chr3 95455390 95459339 +
3 domain predictions
 –
LotjaGi5g1v0074800.1
n.a. Serine/threonine-protein kinase ATM; TAIR: AT3G09670.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A1J7GM74|A0A1J7GM74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074800 LjG1.1_chr5 12396367 12404449 +
4 domain predictions
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LotjaGi5g1v0074800.2
n.a. Serine/threonine-protein kinase ATM; TAIR: AT3G09670.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A1J7GM74|A0A1J7GM74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074800 LjG1.1_chr5 12400219 12403648 +
4 domain predictions
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LotjaGi5g1v0074800.3
n.a. Serine/threonine-protein kinase ATM; TAIR: AT5G02950.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A1J7GM74|A0A1J7GM74_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074800 LjG1.1_chr5 12400346 12403646 +
4 domain predictions
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LotjaGi5g1v0161100_LC.1
n.a. Serine/threonine-protein kinase ATM; TAIR: AT3G09670.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|A0A151T176|A0A151T176_CAJCA Serine/threonine-protein kinase ATM; Found in the gene: LotjaGi5g1v0161100_LC LjG1.1_chr5 41402475 41406875 +
4 domain predictions
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LotjaGi5g1v0163800.1
n.a. Tudor/PWWP/MBT domain-containing protein; TAIR: AT3G63070.1 Tudor/PWWP/MBT domain-containing protein; Swiss-Prot: sp|F4IZM8|HUAL3_ARATH Protein HUA2-LIKE 3; TrEMBL-Plants: tr|I1JFC3|I1JFC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163800 LjG1.1_chr5 41957601 41974293 +
4 domain predictions
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LotjaGi5g1v0222500.1
n.a. PWWP domain-containing family protein; TAIR: AT3G05430.1 Tudor/PWWP/MBT superfamily protein; Swiss-Prot: sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM; TrEMBL-Plants: tr|K7N598|K7N598_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0222500 LjG1.1_chr5 52943179 52952459 +
4 domain predictions
 –