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LotjaGi1g1v0686000.1

Overview

Field Value
Gene ID LotjaGi1g1v0686000
Transcript ID LotjaGi1g1v0686000.1
Lotus japonicus genome version Gifu v1.2
Description Triosephosphate isomerase; TAIR: AT2G21170.1 triosephosphate isomerase; Swiss-Prot: sp|Q9M4S8|TPIC_FRAAN Triosephosphate isomerase, chloroplastic; TrEMBL-Plants: tr|I3SZG4|I3SZG4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0686000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125277906..125282208) extracted from Lotus japonicus Gifu genome v1.2.

GGAAAATTTATTGTGGCATGTGATGAGTCACGAGAGGCATGAGAAGATGGATGGTGGTGTTTATCCTTAATTTACCATGT AAACTCCGAAGTAGTTAGTGTTAGACTATAAAACAGTAAAATCAATGTCTCACTCACTCACTCCGAACCAAACCACTCAA CAACACTAGTACAAGCTAATCCAACCCACCTGGTATCTGCAGCCTCCACCACCAACCCTTTCACTTTCCTCTTCTTCTCC GATGGCAACATCACTCGCTTCTCAACTCTCCGTCGGCCTCCGCCGCCCATCCCCCAAGCTCGATTCTCTCAATTCTCAAT CCACCCATTCCCTCTTCCATTCCAATCTTCGCCTTCCAATCTCTTCTTCCAAACCCTCCCGCTCCGTCATCGCCATGGCT GGCTCTGGCAAGGTACCCAACTCTTCCTTCTTTCTTCTTCTTCTTCTTCCCATTTTATTTTCTGGGGCAAAATAAAAATT AAATTTTTATTATTCCCGTTAGTAATTTTTATTATTTCAATTTTTATATAATACATGTCACTGTGATTTCGGCGGGCAAT GTGATTTTCCTTGATGGGTTGGTTTGCTTTTATTGTTTATTTATTATACCAAAGTCTTCTGTAGCTGTATGTAGCTCAAA ATGCTCTTGAAGGATTTTATTTCATATTTTTCTGTAAATCAATTTATTGATTCCAACATCTTATTCACTTGGTAGACCCA GGATTGATTTTTTGGGTTATAGATTGTTCATTTATGTTCAAGTTGTTGATATCCATTTTGCTAGTTGGTGATACTGATAT TGATATTTTCTTCACTTCTTTGTGGTTTCAGTTCTTTGTTGGAGGCAACTGGAAGTGTGTAAGTATCTTTCTCTCATAGT TCTTTTCTTTTTCTCTGGTTGCGAGGTTTTTATTTATTGGTGAAATGCTATGCCTCCTTTAGGTGATTGAATACTTTACT GCTCTGGTTATTGTTCTTATTTTGACATGGGGATTTTGCACTTACAGCTGCACACTATGGGAATGTATGTTTTGTTTAGA ATAAGTACTATTTAAGTACCCTTTGTAATCATGTCTCCTTATAGTTATTGAGCTTATTTTTCTGGAGTTTCCATCCGGGT ATAAATCATCCCACTTTGCAACTTATGGCCTATGACTTGTCCCTATCTCCAGTTTTAGTAAATCTGGATAATAGTTACCA GTCTTGTTCACTCTGTAAAGCTCAAAACAACTTCTAGGTTGGTCAGAAACAAGTTTCATAAACTTACCCAAACACCTACA TAAGTGCTTATGCTGTAAAATAAGCTCAAATTCTTCAAAACACAACTTTATTGTCTCTTACTGCCTTACCTGGTTTTTTG AAATTTTAGAGAGACACTTCCTTTTTGTGCTGCATTTGCATTGTTCAGTAGTTTTTATTTTATTTTATTTTTTATTTTAT ATGTGCTCAGCCACTTATAAGTACAGATGAAGTATTTGATTCTCATGGTTAAATGACTTAAATCATTACTTGTTAACCAG TTCAGTTGCCAACAACATTGCTTGCAATATCATTTTCTCCCTCAAAACTGACTTTATTTGTTTTTTATTACTTCTGTTGT TATCTACAGAATGGCACAAAAGACTCTATCAGCAAGCTTGTCGCTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGG TGAGAAATATTCGATCTTTCAATTTTATGAGCTTCTAGTTAAAAGCTTTAGAAGAAAACAAAAGTTTATATTATACTTCT CTACAGTTCATAAAATCCATAAATTGCTGAGTTTGAGAACAAATTTTTCCCCCTGCTAATATACTTGGCTTAGCTAAATG CTGATAAAACGCATTCCAATTTGAAATGGGGATACATTCCTTGGCGTGCTGTCCAGTATATAGATGTTTATAAGAGTTCA AATCATTTGTCAAGGAATTGAATCTAGGTATCTAGTGACCATTCCAGTAGTGAAAAGAGGGGGAAGTGGATGCATGGAAA GCCTTCCAATTATGGGTCATGTGCTGAGAATTCCTCTGTGCTTTCATCACAACTCATTGAACTTACCGGACGTTACATAC TGACTTCCTATAGAGTTTTTCTGCACATGTACAATGGATTCAATAAGAAATATGTCATTTTTTTGTTAGTTCAAGGAGTC TTGTTGGTGAGTTTCAAAGACAGGGAGATTTTTGGCACATGATCCACAGTGAGAGGGTTCCTTGTATTTTCCCCACAAAA AAGTAGGTTTTGAGGATGTGGTTCATGTCTGATTACTTTTTTAATATATCTGCCATATTTTATTTTGATGAGATTTTCCG TTTTGCGAGAAGTACAGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAGAACTCCATTACAGATAGGA TTGAAGTATCTGCCCAGAATTCTTGGGTGAGTAAAGGTGGTGCTTTCACTGGAGAAATCAGGTTAGCTTGTTCTCCTGTC ATGGGTTAAATGATCTGGGACTCTGTTAGATGATAACAAATGCCCTTCTTTTCTATATTCGCATTCTCATTCTTGCTGTT CTTGATGTAGTTCAGATTCTTACGCCATTTATATTATTTTTCTATGATGGTCCTCTACTATGCTGTGATTTAACAACTTA TCTCAGTCAATTAACTAATACAAATACCATCTGATTCATGTAGCGTGGAACAACTGAAAGACCATGGAGTCAAGTGGGTC ATTCTTGGACATTCCGAGCGAAGACATATCATTGGAGAAAAAGATGAGGTAAAACAAATTCAGAAATCATTTACAGTAGC TTTCCCTAAGAATGTTATCAATATCTTTGTAAAAGATGCAAAATATTTAAGATTGTAATTGAAGAATGTCAACTCCAGTT TATAGGAAAGAAAGCTGCCTATGCTTTGACCGAGGGTCTTGGAGTGATTGCATGCATCGGGGAGTTGTTAGAAGAAAGGG AAGCTGGGAAAACATTTGATGTCTGTTTCCAGCAATTGAAGGCTTATGCAGGTGAAAGCTATGTTTCTAATCCGTTTTCT TTGAGGAAGAACAAGAAGAGGGAGGAGAATTGGTTTTGCTGATTGCTTCGATAACGTCGTGTATAATCCATTATATGCAG ATGCAGTGCCTAGTTGGGATAATATAGTCATTGCATATGAACCTGTCTGGGCCATTGGAACTGGCAAAGTGGCCTTGCCC GAGCAAGCTCAGGAAGTACACGCAGCTATTCGTGATTGGCTTCAAAAGAATGTCTCCGCTGAAGTTGCATCTAAAACGCG AATTATTTATGGAGGTAGATCATTTATTGTAAATATAGTTGCATTTGCGCTTGTTGCGGTGTCAAATTTAAGATACCATT ACATAAACTAGCATGCTTTATATATCATGTATTCTTGAGCTTAGAAAACAACTTTTGAAGCATTTGATAACTCTCATTTG GATGTGATGTACTAATATTCTGTTTTCAGGATCTGTGAATGGAGGCAACAGTTCTGAGCTTGCAAAGAAAGAAGATATTG ATGGATTTCTTGTTGGAGGTGCTTCATTGAAGGTACATGGTTTCTCCAAAGTTTCTTTGACCCAAGTTTCTTCAGTCCAA GTTTGGAAATCATTGATTGCTGATTCAAACATGCTACTCTTTCTCAACTTATTATTTATACTTACAAGTTGATGTTGTTG AGGTGCAGGGTCCTGAGTTTGCTACTATTATCAATTCAGTCACATCCAAAAAAGTTGCGGCTTGATTACTTAATGGGGTT TTGATGATATGAGAGCATTAAAAGATAAAAAAGGGGCTAGTCTTATAAGAGGCAATAATGTGTGTTGTATTATTATAACA GTTTGGTCTTGATGGATCAGTAGGGAAAGCACCCTCTCAGTTTTCCAAAGAGCCAGTGTTTTTCTGGTAGCAATTAGAGA TACAAAACATGTTTAAAGGCAATAAATATTTCTGAACTATTGTTGCTTTACATACTTCACCTCAATATTAATAAATGTTG GTTTTGTTTATGCTTTCGATTGTGAGCAAAAGCATTGTCAATGAACATGGAAGAGTCCAGATTTTTGGGGACAAAAAAAT GCTCCTAATAATTTTATTGGCTTTGACATGGAAAAAAAGGTAATTTGGCAATGCAGGTCTTTTGTCCAAGGTGCTCTCTC AGTCATACATTTGAGATCGTTAATCTAATATTAGGGTGGTGTTAGGGTAAATAATGTGAGGAGATGTTGAATCTTAGTAA TGAATGTTTTGGAACCATGGCTGGAATGTGATTTTAGCATAGTTTTTAAAACCGGGATAACTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0686000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACATCACTCGCTTCTCAACTCTCCGTCGGCCTCCGCCGCCCATCCCCCAAGCTCGATTCTCTCAATTCTCAATC CACCCATTCCCTCTTCCATTCCAATCTTCGCCTTCCAATCTCTTCTTCCAAACCCTCCCGCTCCGTCATCGCCATGGCTG GCTCTGGCAAGTTCTTTGTTGGAGGCAACTGGAAGTGTAATGGCACAAAAGACTCTATCAGCAAGCTTGTCGCTGACTTG AACAGTGCAAAATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAGAACTCCAT TACAGATAGGATTGAAGTATCTGCCCAGAATTCTTGGGTGAGTAAAGGTGGTGCTTTCACTGGAGAAATCAGCGTGGAAC AACTGAAAGACCATGGAGTCAAGTGGGTCATTCTTGGACATTCCGAGCGAAGACATATCATTGGAGAAAAAGATGAGTTT ATAGGAAAGAAAGCTGCCTATGCTTTGACCGAGGGTCTTGGAGTGATTGCATGCATCGGGGAGTTGTTAGAAGAAAGGGA AGCTGGGAAAACATTTGATGTCTGTTTCCAGCAATTGAAGGCTTATGCAGATGCAGTGCCTAGTTGGGATAATATAGTCA TTGCATATGAACCTGTCTGGGCCATTGGAACTGGCAAAGTGGCCTTGCCCGAGCAAGCTCAGGAAGTACACGCAGCTATT CGTGATTGGCTTCAAAAGAATGTCTCCGCTGAAGTTGCATCTAAAACGCGAATTATTTATGGAGGATCTGTGAATGGAGG CAACAGTTCTGAGCTTGCAAAGAAAGAAGATATTGATGGATTTCTTGTTGGAGGTGCTTCATTGAAGGGTCCTGAGTTTG CTACTATTATCAATTCAGTCACATCCAAAAAAGTTGCGGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0686000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATSLASQLSVGLRRPSPKLDSLNSQSTHSLFHSNLRLPISSSKPSRSVIAMAGSGKFFVGGNWKCNGTKDSISKLVADL NSAKLEPDVDVVVAPPFVYIDQVKNSITDRIEVSAQNSWVSKGGAFTGEISVEQLKDHGVKWVILGHSERRHIIGEKDEF IGKKAAYALTEGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVALPEQAQEVHAAI RDWLQKNVSAEVASKTRIIYGGSVNGGNSSELAKKEDIDGFLVGGASLKGPEFATIINSVTSKKVAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR21139
11 307 297 2.6E-183
IPR000652
PANTHER
PTHR21139:SF20
11 307 297 2.6E-183 –
Gene3D
G3DSA:3.20.20.70
52 307 256 1.3E-108
IPR013785
SUPERFAMILY
SSF51351
55 300 246 1.96E-94
IPR035990
Hamap
MF_00147_B
56 299 244 56.897
IPR022896
ProSiteProfiles
PS51440
57 299 243 82.099
IPR000652
CDD
cd00311
58 298 241 5.87649E-128
IPR000652
Pfam
PF00121
59 297 239 7.2E-90
IPR000652
TIGRFAM
TIGR00419
59 289 231 3.0E-78
IPR000652
ProSitePatterns
PS00171
215 225 11 -
IPR020861

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004807
Molecular function Triose-phosphate isomerase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate = glycerone phosphate.
Subterm of
GO:0006096
Biological process Glycolytic process The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0686000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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