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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0688900 |
| Transcript ID | LotjaGi1g1v0688900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal-associated protein; TAIR: AT5G03380.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9LZF1|HIP6_ARATH Heavy metal-associated isoprenylated plant protein 6; TrEMBL-Plants: tr|I1NAB0|I1NAB0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0688900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125638950..125641839) extracted from Lotus japonicus Gifu genome v1.2.
AGGGGTTAAATTTGAGCACTTCGAGAATCGTGGGGGCAATAAAGAGCTTGACAGAAAAGTTCAATCCCGTTCTCGGGGAA ACCCAACTCTGCTGACGGCGTGCTTTGTATCCTATCCTATCCCTACCTGTTAGCTTAGCAGTATTTCAAAAACTGCGTCT CATCGCTCAACCCAACGGATACATTTTCCCACCATCCTACGGTTTCTCAAGAGCCAGTAACGTCTTCGCAAGTAGTATAT CACAAACTCAAGGGTAAATCAGTCACTTCACCACCAAGTCAAGGTCCAGTCAAAATTCAAATCAAACCGTAACGTAAGTC CAACACATATCACTGTGGTTATGTATGCCCATACATACATACATATACATAACATATTAACACATGCTCAACCACATACA TGCACCATTCACTTTCTCACTCCCTTTCTCCCCTATATATATACTCTTTCATTTGCTTCTTTTCCCAATTCCCCAGTTTC AAATTTTTCACTAGCAAAACCTAAATGGGAGAGGTTAGTTTCAACTTTCAATTTCACTCTCTATTTTCAGTTTTCGTTCA CTTCTTGTTAATTACTCACATGTTTTGATTTGTCGTACAGAAAACGGAGCAGGCGAAGAACAATGAGAACGCCGTCGTTT TGAAACTCGACTTGCATTGTGAAGGATGCGTTAAGAAAATCAAACGAGCCCTTCGCAATTTTAACGGTACTTTTTTTTCG AGACTTGTTCGAGTCGGGAACATTCATTTCTCAATTTCAAGTTATTTTTTTAATCAATTCGAAACTGAAATTGGTTGTTA TGGATGATGCAGGCGTGGAAGATGTGAAGGCCGATTTATCCGGTAACAAACTAACGGTCATCGGAAAAGTGGACCCTACC AAGGTGCGGGATAAACTAGCGGAGAAAACTAACAAAAACGTTGAGCTTGTTTCTTCTCCGCCTAAAAAAGACGCCGCCGG TGATAAACCACCGCCGGAGAAGAAGCCGGAGGAGAAACCGAAAACTGACGATAAAAAGCCGGAAGAAGAAAAAACGAAAC CCGATGAGAAAAAGGCGGAAGAGAAAACCAAAACCCCTAAACAGGTATGGAAACTGGAAATTGGAAATTTCTGAGAAATT GAGTGCTAATTAGTGTGATTGATTTGAATTGATGAGTTGATTTTGTGTTGTTTGATTTCAGAGCACGGTGGTGATGAAGA TCAGGTTGCACTGTGACGGTTGCATTCACAAAATTGAGAAGATTGTCCTTAAGGCAAAAGGAGTTGAGTCGGTGAATATT GAGGGAGGAGGGAAGGATTTGGTGACGGTGAAGGGAACGGTGGAGGCGAATGAGTTGGTGCCGTATTTGAGGGAGAAGCT GAAACGGAACGTGGAGGTGGTGGTGGTTCCGCCGAAGAAAGACGATGAAAAGAAAGAGAACAAACAAGGTGGCGGTGGTG GTGAGAAGAAAGAGGGTGGTGGCGATAAGAAAGAGGTTGAAAGCGGAACAACGAAGGTGGAGGTGAACAAAATGGAGCAC TACGGGTATGGGTATGCACAGCAACCTCCGATGTACTGGCACGGCGGGTATGCGCCGGGTGAGAGTAGCGGTGGCGGCGG CGGTGGTGGTTATGCGGTGGAGGGTCAAGGTGGGTATTGGAATGATGGAGGGTATAATGGTAATAGCAACTACTACCAGC ATGGGTATGTGAACCAGCAACAACAAGGAGGAGGGTATATGGTGGAGCAACCCCCACCGTACTATTTGCACCAGCAGCAT CCTCTTCCTCCACAGATGTTTAGTGATGAGAATCCCAATGCATGTTCCGTGATGTGAGCCTGAACCTTTTGAGTATTTTT ACGTTAATTAGTTAATTAATTGAGGTTTATTTTGATGATGTATAATACAGGAAGGATTAAAGAAGGTTGTAAATAACAAT TGTTGATTGTTAATTCAATTCAGCAAGGGGAAGAGAGTTTTATTTTACATTATTAAACTTGAATTAGTAGAATAGGATTA GAACAAGTTAACGAGGTAGAACTTTGTTATGACCTCATGGGTTAGTGACGTAGAGGACGGTACGGCCGGCTGATGAGAAT TGGTTTATATATATAATTTGAGAAAACAAAATGGATTAGCTGTTTTTTGTGTTTTTGTTTTTCTTATGTATTGTAAAAGC TAATTTTGACTTTTGAGATCATCGCAATTGAGTTTGCAGATGTTGTCAACATTTGGCAATTTATGCTGTGCATATTCCAT GTTTTATTTGTTTTAGGGCATGTTTGGTTTAAGGAATGAGAGGATGGAGAAGTGAGGAGACTGATTTTGATCTTAAGCAT GTTTTTTTTTTTTTTTTTTTTATGGTTATCTTAAGCATGTTTGGTTTAAGGAATGGAAGGAAGGAGAAGTGAGGAGACTG ATTTTGATCTTATCAATGATTGGTTAAGGGAAGATAAGAATGTGAAATAATCATTTTCTTGTTTGGTTCAAGAGGGATGA GAGAAATTTTAAAACATAGATATTTTTGTTATTACTTCTATTGAGAACCTAAACACAAGGAAGAAATTTTTTGTCTGGTG AAATATTTATCTTTTAAATCTCTCTCTATTTCAGCAACATCTATCGTTTTATTTGATTTGAGTGAGGATTTTGATTTCCT TTATTTCATTCTCCTTCTATAAATCAAATAAAACGATAGATGTAAACAACTCATTTTCTCCGCTCTATTTCACTCAAACG GGTAGGAAGAGAAAATCTCCAGATGCATAGGAACACAACAACGACAATAAACAAGAACTAGAGAAAAATTGATGGGCAAG CTCTTTTCTGATGAACTCATCAACCCGCAAATACAGTATATTTTTTTGCTATTGCATAAATCCTTTAAATTATGTATAAT CATGTAAGTG
CDS sequence (LotjaGi1g1v0688900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGAAAACGGAGCAGGCGAAGAACAATGAGAACGCCGTCGTTTTGAAACTCGACTTGCATTGTGAAGGATGCGT TAAGAAAATCAAACGAGCCCTTCGCAATTTTAACGGCGTGGAAGATGTGAAGGCCGATTTATCCGGTAACAAACTAACGG TCATCGGAAAAGTGGACCCTACCAAGGTGCGGGATAAACTAGCGGAGAAAACTAACAAAAACGTTGAGCTTGTTTCTTCT CCGCCTAAAAAAGACGCCGCCGGTGATAAACCACCGCCGGAGAAGAAGCCGGAGGAGAAACCGAAAACTGACGATAAAAA GCCGGAAGAAGAAAAAACGAAACCCGATGAGAAAAAGGCGGAAGAGAAAACCAAAACCCCTAAACAGAGCACGGTGGTGA TGAAGATCAGGTTGCACTGTGACGGTTGCATTCACAAAATTGAGAAGATTGTCCTTAAGGCAAAAGGAGTTGAGTCGGTG AATATTGAGGGAGGAGGGAAGGATTTGGTGACGGTGAAGGGAACGGTGGAGGCGAATGAGTTGGTGCCGTATTTGAGGGA GAAGCTGAAACGGAACGTGGAGGTGGTGGTGGTTCCGCCGAAGAAAGACGATGAAAAGAAAGAGAACAAACAAGGTGGCG GTGGTGGTGAGAAGAAAGAGGGTGGTGGCGATAAGAAAGAGGTTGAAAGCGGAACAACGAAGGTGGAGGTGAACAAAATG GAGCACTACGGGTATGGGTATGCACAGCAACCTCCGATGTACTGGCACGGCGGGTATGCGCCGGGTGAGAGTAGCGGTGG CGGCGGCGGTGGTGGTTATGCGGTGGAGGGTCAAGGTGGGTATTGGAATGATGGAGGGTATAATGGTAATAGCAACTACT ACCAGCATGGGTATGTGAACCAGCAACAACAAGGAGGAGGGTATATGGTGGAGCAACCCCCACCGTACTATTTGCACCAG CAGCATCCTCTTCCTCCACAGATGTTTAGTGATGAGAATCCCAATGCATGTTCCGTGATGTGA
Protein sequence (LotjaGi1g1v0688900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEKTEQAKNNENAVVLKLDLHCEGCVKKIKRALRNFNGVEDVKADLSGNKLTVIGKVDPTKVRDKLAEKTNKNVELVSS PPKKDAAGDKPPPEKKPEEKPKTDDKKPEEEKTKPDEKKAEEKTKTPKQSTVVMKIRLHCDGCIHKIEKIVLKAKGVESV NIEGGGKDLVTVKGTVEANELVPYLREKLKRNVEVVVVPPKKDDEKKENKQGGGGGEKKEGGGDKKEVESGTTKVEVNKM EHYGYGYAQQPPMYWHGGYAPGESSGGGGGGGYAVEGQGGYWNDGGYNGNSNYYQHGYVNQQQQGGGYMVEQPPPYYLHQ QHPLPPQMFSDENPNACSVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 77 | 68 | 3.0E-16 | – | |
| PANTHER | 11 | 340 | 330 | 2.0E-101 | – | |
| PANTHER | 11 | 340 | 330 | 2.0E-101 | – | |
| SUPERFAMILY | 15 | 76 | 62 | 3.93E-13 | ||
| Pfam | 20 | 70 | 51 | 5.5E-13 | ||
| CDD | 21 | 76 | 56 | 4.09434E-9 | ||
| ProSiteProfiles | 21 | 69 | 49 | 10.16 | ||
| MobiDBLite | 72 | 129 | 58 | - | – | |
| MobiDBLite | 87 | 128 | 42 | - | – | |
| Gene3D | 128 | 198 | 71 | 1.8E-16 | – | |
| SUPERFAMILY | 130 | 187 | 58 | 1.83E-7 | ||
| Pfam | 133 | 193 | 61 | 1.3E-8 | ||
| CDD | 138 | 191 | 54 | 5.84813E-6 | ||
| MobiDBLite | 200 | 231 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0688900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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