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LotjaGi1g1v0690000.1

Overview

Field Value
Gene ID LotjaGi1g1v0690000
Transcript ID LotjaGi1g1v0690000.1
Lotus japonicus genome version Gifu v1.2
Description Allene oxide cyclase; TAIR: AT1G13280.1 allene oxide cyclase 4; Swiss-Prot: sp|A2XID3|AOC_ORYSI Allene oxide cyclase, chloroplastic; TrEMBL-Plants: tr|F6KBT6|F6KBT6_SOYBN Allene oxide cyclase 6; Found in the gene: LotjaGi1g1v0690000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:125757956..125759874) extracted from Lotus japonicus Gifu genome v1.2.

CAATTATACAAAGCATTCCAAACACCGTCCACTGACTATCCCTCCGGCCATCATTGAACGTTAGACTCTTTTCCTTCCCC ATTTGTTTCACATTTCACAACATGATTAATCACATCACACTTTCTTCCACCGTCCACCACCACATAATGCACCACTTCCT CTATATAAATCACCATTTCCTACCTCATTCTCACACAAGCAATCTGAATATAGCACCAAACTTAGCAAATACTACTACCA CTATCAGCAACAACAACAATGGCCTCATCAAGCTATGCTTTGAAAACTGTCCCTTCTTCCTTTGTTAACCCTGCAATTTC CAACCCAAGATCATTGCTCACTACCCCACCTATCAAAGCTTTCTTACCCTTCACTTCATCAACCCCATCTCTCACCAGGA ATCTCAAGCTGAACAACACCCTGCCACAGTCCTGCTTTTCTTCTGTGCCCAGGAAATCATTCTCTTGCAGAAGCCAACAG GCAGCTGAGTCCTCTGAAACTGGTATCCATTAAACTGTTCAAACTTTTCAATTCTTGTCCTCTACCCCAAAGGGTTTAGA TTAGATTAATCATGTTTTGACCCTTTTGGTTTGTTTGATTTGTTTTGCAGAGAGAGTTCAAGAACTGAGTGTGTATGAGT TCAATGAGAGAGACCGTGGTAGCCCTGCTTACCTGCGATTAGGCTTTAAACCTGTTAACTCGCTCGGTGATCTAGTCCCC TTCAGCAACAAGGTGAAATTTCTTTCATTCTATTCTTCAATTCACTCCACTAATATTCACTTAATCTTTAATTTTACAAT GTTGTTTCCTTATAATATATGCAATTTGTAATATTATGTTGTTTCATTATAAGTCATCTGTCATTTTGCATTATGTTACT AGCATGTTTCAATCAGCTTAATGTTACTCTAAATAAATTCTCACACTCAGAAGCTACTCATATAAACTTCTGTCATAAAC CATAATTGATTATCTCTAGAACCAACTGTAGAAAAAATTCCAAATATCCTGTAAATCCTTAATTTTATCAATTTTGATGC AATGTCAGGTATCTATCTGTTTTACTCCATTTTGATGTTACTGAGAAGTTGATTATGGTTTTTGAATTTGTTTTCTGGAC TATGCAGTTGTACACAGCGGATTTGCAAAAGCGCATTGGGATAACTGCTGGTATCTGCATTTTGATTGAACACAAACCAG AGAAGAATGGTGACAGGTATGAAGCTGTTTACAGCTTCTACTTTGGAGACTATGGTCACCTTACAGTGCAAGGACCATAC CTGACCTATGAGGACACATGGCTTTCTGTGACTGGTGGTGCTGGCATCTTTGAAGGGGCTAGGGGCCAGGTCAAGTTGAA CCAGATTGTTTATCCTTTCAAGATTTTGTACACATTCTATCTGAAGGGTGTTAAGGATTTGCCTCAGGAGCTTCTTGTCA AGGCTGTTGAGCCCCACCCTGCTGTTGAAGCTGCTCCTGCTGCTAAAGCCCTTGAGCCTAATGCTACCATTGCTGGTTTC ACTAACTGATGATTGAGGGTGTTGCTTGTAGCTGATGTAGTTTGGCTTAATTTAGTAATGAATAATAAGTTTGGTGACCG TGGGTTTTGTAGTGGTGGAATTTCTTTTTGCAATTAGCATTGGTTGGTGGACTAAAGATGAAAAAGTTCCAAGTTGTAAT AATTCTCACTCCGTTCCTTATTAACTGTCTACTTTAAAAAAAAAATTATTCATATATATCTGTCTACTTAGAGTTTCAAG AGAGCATTAAATGATGTTTTTCCATGAAATGCCCTTGCAGGAACAATAAATGATGAAAGATAATATACATTTTAAAGTGT GAAATAGGAAATCAAATAATACTTTTATGAAAAATAACAAAATTAATTGCACTCCTTAATATGTGTGTTTCTTCTCTTC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0690000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTCATCAAGCTATGCTTTGAAAACTGTCCCTTCTTCCTTTGTTAACCCTGCAATTTCCAACCCAAGATCATTGCT CACTACCCCACCTATCAAAGCTTTCTTACCCTTCACTTCATCAACCCCATCTCTCACCAGGAATCTCAAGCTGAACAACA CCCTGCCACAGTCCTGCTTTTCTTCTGTGCCCAGGAAATCATTCTCTTGCAGAAGCCAACAGGCAGCTGAGTCCTCTGAA ACTGAGAGAGTTCAAGAACTGAGTGTGTATGAGTTCAATGAGAGAGACCGTGGTAGCCCTGCTTACCTGCGATTAGGCTT TAAACCTGTTAACTCGCTCGGTGATCTAGTCCCCTTCAGCAACAAGTTGTACACAGCGGATTTGCAAAAGCGCATTGGGA TAACTGCTGGTATCTGCATTTTGATTGAACACAAACCAGAGAAGAATGGTGACAGGTATGAAGCTGTTTACAGCTTCTAC TTTGGAGACTATGGTCACCTTACAGTGCAAGGACCATACCTGACCTATGAGGACACATGGCTTTCTGTGACTGGTGGTGC TGGCATCTTTGAAGGGGCTAGGGGCCAGGTCAAGTTGAACCAGATTGTTTATCCTTTCAAGATTTTGTACACATTCTATC TGAAGGGTGTTAAGGATTTGCCTCAGGAGCTTCTTGTCAAGGCTGTTGAGCCCCACCCTGCTGTTGAAGCTGCTCCTGCT GCTAAAGCCCTTGAGCCTAATGCTACCATTGCTGGTTTCACTAACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0690000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSSYALKTVPSSFVNPAISNPRSLLTTPPIKAFLPFTSSTPSLTRNLKLNNTLPQSCFSSVPRKSFSCRSQQAAESSE TERVQELSVYEFNERDRGSPAYLRLGFKPVNSLGDLVPFSNKLYTADLQKRIGITAGICILIEHKPEKNGDRYEAVYSFY FGDYGHLTVQGPYLTYEDTWLSVTGGAGIFEGARGQVKLNQIVYPFKILYTFYLKGVKDLPQELLVKAVEPHPAVEAAPA AKALEPNATIAGFTN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31843:SF10
1 255 255 8.0E-142 –
PANTHER
PTHR31843
1 255 255 8.0E-142
IPR009410
Gene3D
G3DSA:2.40.480.10
69 255 187 4.4E-89
IPR034871
Pfam
PF06351
82 253 172 8.7E-90
IPR009410
SUPERFAMILY
SSF141493
84 255 172 4.84E-82
IPR034871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009695
Biological process Jasmonic acid biosynthetic process The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative.
Subterm of
GO:0016853
Molecular function Isomerase activity Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
Subterm of
GO:0046423
Molecular function Allene-oxide cyclase activity Catalysis of the reaction: (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoate = (15Z)-12-oxophyto-10,15-dienoate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0690000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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