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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0690700 |
| Transcript ID | LotjaGi1g1v0690700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151QYZ6|A0A151QYZ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0690700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125862829..125863835) extracted from Lotus japonicus Gifu genome v1.2.
CGTTATCACTACAGAAGAATTGCAAACTCAGTGAAATGGGGCAGTGGCATAATGGGGTGTGGAGTTGGAAATTTCGATGG AGGCGTGTGTTAAGTGCTAGGGAGAATGTTTTGGTACAAAATATGCTGCTGGGACTGCAACAAATAGATCTAAAGCAGGA CATGAGGGATGCTTGGCAATGGACACATGAAAATGATGGGAGATATACTGTTAGTTCTGCCTATCAAGTGTTGTTGGACT CTGTTATTGGGGAGGATCCAGTGCTGTTTGACAGGCTGTGGTCCAGTGTGGCCCCTTCGAATGTTGCTGCGTTCGTATGG AAGGTGGTCATTGACAGGATACAGTCAAAGGCTAACTTAAGGAGGAGGCATATAATAACTGATGAGGAGGCCAGGTGCTC AATATGTAATATTGAGGAAGAGTCCACTAACCATTTGTTTTTTACTTGCAGCTTGGCCTTACAGGTTTGGAGTTATTGTA ATTTGTGGCTGGGTATTGCTATTGCACTGCCAAGGGATGCCAAGACACATTTGATGCAGCATGAGTTACTTGGTCTCAGT TCATGTCAAAACGCTGGTCTGAGGGCGATATGGATGGCCACGGTGTGGTCTCTTTGGGTGGCGCGGAACAATTTGATTTT TAGGGGAGGACAATTTGATGCAGCAAGGGTCTTTGAGCTAATCCAAGTCAGATCATGGAAGTGGTTGTCCACAAGGTCAC GGGATTTCCAACATTCGTTCTCAGAATGGTGCTCTAATCCAATCTTATGCCTGAAATCAATTCATTGAGTGGAAGGCAAA CATATGGCAGGTGTGTGCTGTTGCTGGGTTCAGAATGTGAGGATGCAAAGGAACTAGTACTATGCGTATTGGGTTGGTTT AAATTGGTGTAATCATTTTATTTTATTTAATCTTCTTCTTCTTCTTTTGTTTCTCTTATCTTTGTATTGGGTTGAAGTAC CCCATATACTTCATATTCATATTAATATATAATTCATGGCTTATAAA
CDS sequence (LotjaGi1g1v0690700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAGTGGCATAATGGGGTGTGGAGTTGGAAATTTCGATGGAGGCGTGTGTTAAGTGCTAGGGAGAATGTTTTGGT ACAAAATATGCTGCTGGGACTGCAACAAATAGATCTAAAGCAGGACATGAGGGATGCTTGGCAATGGACACATGAAAATG ATGGGAGATATACTGTTAGTTCTGCCTATCAAGTGTTGTTGGACTCTGTTATTGGGGAGGATCCAGTGCTGTTTGACAGG CTGTGGTCCAGTGTGGCCCCTTCGAATGTTGCTGCGTTCGTATGGAAGGTGGTCATTGACAGGATACAGTCAAAGGCTAA CTTAAGGAGGAGGCATATAATAACTGATGAGGAGGCCAGGTGCTCAATATGTAATATTGAGGAAGAGTCCACTAACCATT TGTTTTTTACTTGCAGCTTGGCCTTACAGGTTTGGAGTTATTGTAATTTGTGGCTGGGTATTGCTATTGCACTGCCAAGG GATGCCAAGACACATTTGATGCAGCATGAGTTACTTGGTCTCAGTTCATGTCAAAACGCTGGTCTGAGGGCGATATGGAT GGCCACGGTGTGGTCTCTTTGGGTGGCGCGGAACAATTTGATTTTTAGGGGAGGACAATTTGATGCAGCAAGGGTCTTTG AGCTAATCCAAGTCAGATCATGGAAGTGGTTGTCCACAAGGTCACGGGATTTCCAACATTCGTTCTCAGAATGGTGCTCT AATCCAATCTTATGCCTGAAATCAATTCATTGA
Protein sequence (LotjaGi1g1v0690700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQWHNGVWSWKFRWRRVLSARENVLVQNMLLGLQQIDLKQDMRDAWQWTHENDGRYTVSSAYQVLLDSVIGEDPVLFDR LWSSVAPSNVAAFVWKVVIDRIQSKANLRRRHIITDEEARCSICNIEEESTNHLFFTCSLALQVWSYCNLWLGIAIALPR DAKTHLMQHELLGLSSCQNAGLRAIWMATVWSLWVARNNLIFRGGQFDAARVFELIQVRSWKWLSTRSRDFQHSFSEWCS NPILCLKSIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 237 | 204 | 6.3E-31 | – | |
| PANTHER | 34 | 237 | 204 | 6.3E-31 | – | |
| Pfam | 57 | 145 | 89 | 1.5E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0690700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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