Transcript — View — Lotus Base

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LotjaGi1g1v0691700.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0691700
Transcript ID	LotjaGi1g1v0691700.1
Lotus japonicus genome version	Gifu v1.2
Description	Peptide upstream ORF protein, putative; TAIR: AT3G53400.1 peptide upstream protein; Swiss-Prot: sp\|B4TUM9\|AAS_SALSV Bifunctional protein Aas; TrEMBL-Plants: tr\|Q2HV37\|Q2HV37_MEDTR Peptide upstream ORF protein, putative; Found in the gene: LotjaGi1g1v0691700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:125983503..125985894) extracted from Lotus japonicus Gifu genome v1.2.

CACATGTGCAGCATACTCTTTTGATTGTAAGTAACGTTTAGCAAAAGTTAAGGATTAAAATGAGCTATAAATCATAAATT AATGAGATAACCATGTACTTTTCATCCAAGAAGCATGAACATGGTTACAGTAATAATTTTCAGAAGGAAAGTGACAGGAG CTTCCTATGATGGGGACTACCGCAGTCACAGATCGCATCTTGACAGGCTATACCCACATCCTCGTTATTAATGTTGTTGT TTCTAAACCTCATCACAACAACTCATTACACTTGCTTCATCTACTTGTTCTCTTCATCCTTCATCATCTTCACCTCCAAA TTCTAATTCAGATCCAAAAAGTTCTCAATTCATGACAAATTGAACCCAGAATGCTTCAACGATGAGGTAATTTCTTCACA ATGAGAGTTTTCAACCCATCCAGCTTGGGTAGTACAATCTGCTGGTATGAGCCATCACAGAAGAAGAGAGTTCCAAGAAG GGTCTGGTTAAGCTTCCAATCATCAATGGGTGTCCTCGTGGGTGGAAATCACACATCATCCAGGTTTTGCACTCGCTAAA TTCTTCTCCCTTTTCCCCCTCCGGCTTTCAATTTCAACAATCTTCAAACAATTCTCAACTCAAACCTCTTTCAACAAAAA ACCCTAATTCCTCAATTTCATGGAGACGAAAACCCTGAAATTCCAGATCCTCAATGGGTCCATAGCGAGGCGCGTGTTCC TCCGCTCAATCGTCCTCGCCTCTGCAATCACCATGGTTACTCTGCTCCGAGCTCCGGTGATCTTCGATTTAGGAACCCTA GTTCTCAATTTGGGTTCGGAAAACGCCACCGCCGTGAGCCCCGGTTCCTATTTGTTTAAAACGCGTTTCTGGGGCTCCGG GAATTGCGAGAAAGATTTCAACTTGACAGTCAACGTGGTCAATGAGCTTATGGGTAAGCAGTTTTTGGTTGACTGTGGAG CAGAGAGTCTCTGCATTGGAGAAGGGTCATCAATGGCTGTTACGGCAATGAAACAGTTGGGATTCTCCAGTGTCAGAGGT GTGAGTACTCACAGATTCTTCTCTCTCAAGCAGAGGAAGTTCGTGTTTGAGCTCGATTACGAGGACTCTTCTTTCGATTT CGTGTTGTCTAGGGACATGGACAAGGTTTCTGTCCCTGCTTTGCTTGTGCTTGAGGCTGAGCGAGTCCTTAAGCCTGGTG GAATTGGTGCTCTGCTTGTGAGCTCCACTGGTTCCCACCCCAATGATTTGATAAGGTCAGCTACTCCTGTTTCATCATTG TTGAGATCTTCAAGTGTTGTGCATGTGGGTTCTTTCAGTGAATTGAACCTGGTGGTTTTCAAGAAAAGATCTGAGAATGT TAGCTCCTTCTATCAGCATGGTTTACCAGCTGATTGTCCAAGCCTCACCCTCACCAAACCACTGATAGATCTGATGGAGC CTATTCTGGGTGAAAAACCACCTCCTGAGAGTGAGATAAAGATCAACTATTTGCCTAAGTTTGTGGATGTTTCTACAAGG AAGCGTTTGGTGTATATTGATATTGGGGTTGGGGAGTTTCTGAATGCAAATGTGAGTGATTGGTTCCTACCATCGTATCC CATTGATCAGAAAGCTTTCAATGTGTATTTTGTTCACTACAACACTTCCATGCTCTTGTCCTATGTTAAGAGACCCGGTG TGACCTTTGTCTATCACCCTGGATTGGCTGGTGAGGTTTCGGAGGCATATGCTACAGATGGAGATTTGGATCCTTATCTC GGGGAGGATGAGTTTGATTTTGTTGCCTGGTTCAAAGAAACTGTGCAGTATGCAGATTTTGTTGTGCTGAAGATGAATGC AGGGAAAGTTGAACTCAAGTTCCTCTCGGATATCTTTGAGACTGGAGCTATATGCTTTGTTGATGAGTTGTTTCTCAGGT GTCCTGAGAAAGGAAATTATGATAAAACCATGACCAAAAAGGAAAGCTGCATTGATCTTTACAAGGGTCTTAGGAGCAAT GGTGTCTATGTCCATCAATGGTGGGGAGACTAAATTGCTTACTAAACTGCTGAACTCTTTGATGATTATGGTGTAATTTG GATTATAGTCCAATTATCTTGTGTGTTGTGTTGTTTTATGTATGTTTTTATGTAGGATGCTATGAACATCCAAGTGCTTT GTGGTTGGGCGCTAAATACTAAATAAGCAACCATTGTTGTTGTGATTTGCTAGTAAAATCTGTGTACTGCTCTCTTTTTG TTAAAGTTTGGTGGTTGATATACTTTTTTCCTTGTTTTGTTTTTGTGGTGATTGATTTGGGTTTTGATGACAAGTAGGAA TTGGCTAAGATTATGTTATGACAGACAAACGCAAAGCCATAACAACTTCCAAAGAGAACGAACCAAATTTTC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0691700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGACGAAAACCCTGAAATTCCAGATCCTCAATGGGTCCATAGCGAGGCGCGTGTTCCTCCGCTCAATCGTCCTCGC CTCTGCAATCACCATGGTTACTCTGCTCCGAGCTCCGGTGATCTTCGATTTAGGAACCCTAGTTCTCAATTTGGGTTCGG AAAACGCCACCGCCGTGAGCCCCGGTTCCTATTTGTTTAAAACGCGTTTCTGGGGCTCCGGGAATTGCGAGAAAGATTTC AACTTGACAGTCAACGTGGTCAATGAGCTTATGGGTAAGCAGTTTTTGGTTGACTGTGGAGCAGAGAGTCTCTGCATTGG AGAAGGGTCATCAATGGCTGTTACGGCAATGAAACAGTTGGGATTCTCCAGTGTCAGAGGTGTGAGTACTCACAGATTCT TCTCTCTCAAGCAGAGGAAGTTCGTGTTTGAGCTCGATTACGAGGACTCTTCTTTCGATTTCGTGTTGTCTAGGGACATG GACAAGGTTTCTGTCCCTGCTTTGCTTGTGCTTGAGGCTGAGCGAGTCCTTAAGCCTGGTGGAATTGGTGCTCTGCTTGT GAGCTCCACTGGTTCCCACCCCAATGATTTGATAAGGTCAGCTACTCCTGTTTCATCATTGTTGAGATCTTCAAGTGTTG TGCATGTGGGTTCTTTCAGTGAATTGAACCTGGTGGTTTTCAAGAAAAGATCTGAGAATGTTAGCTCCTTCTATCAGCAT GGTTTACCAGCTGATTGTCCAAGCCTCACCCTCACCAAACCACTGATAGATCTGATGGAGCCTATTCTGGGTGAAAAACC ACCTCCTGAGAGTGAGATAAAGATCAACTATTTGCCTAAGTTTGTGGATGTTTCTACAAGGAAGCGTTTGGTGTATATTG ATATTGGGGTTGGGGAGTTTCTGAATGCAAATGTGAGTGATTGGTTCCTACCATCGTATCCCATTGATCAGAAAGCTTTC AATGTGTATTTTGTTCACTACAACACTTCCATGCTCTTGTCCTATGTTAAGAGACCCGGTGTGACCTTTGTCTATCACCC TGGATTGGCTGGTGAGGTTTCGGAGGCATATGCTACAGATGGAGATTTGGATCCTTATCTCGGGGAGGATGAGTTTGATT TTGTTGCCTGGTTCAAAGAAACTGTGCAGTATGCAGATTTTGTTGTGCTGAAGATGAATGCAGGGAAAGTTGAACTCAAG TTCCTCTCGGATATCTTTGAGACTGGAGCTATATGCTTTGTTGATGAGTTGTTTCTCAGGTGTCCTGAGAAAGGAAATTA TGATAAAACCATGACCAAAAAGGAAAGCTGCATTGATCTTTACAAGGGTCTTAGGAGCAATGGTGTCTATGTCCATCAAT GGTGGGGAGACTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0691700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METKTLKFQILNGSIARRVFLRSIVLASAITMVTLLRAPVIFDLGTLVLNLGSENATAVSPGSYLFKTRFWGSGNCEKDF NLTVNVVNELMGKQFLVDCGAESLCIGEGSSMAVTAMKQLGFSSVRGVSTHRFFSLKQRKFVFELDYEDSSFDFVLSRDM DKVSVPALLVLEAERVLKPGGIGALLVSSTGSHPNDLIRSATPVSSLLRSSSVVHVGSFSELNLVVFKKRSENVSSFYQH GLPADCPSLTLTKPLIDLMEPILGEKPPPESEIKINYLPKFVDVSTRKRLVYIDIGVGEFLNANVSDWFLPSYPIDQKAF NVYFVHYNTSMLLSYVKRPGVTFVYHPGLAGEVSEAYATDGDLDPYLGEDEFDFVAWFKETVQYADFVVLKMNAGKVELK FLSDIFETGAICFVDELFLRCPEKGNYDKTMTKKESCIDLYKGLRSNGVYVHQWWGD

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47291:SF3 View details on PTHR47291:SF3 Search for proteins/transripts with this domain View external data on PTHR47291:SF3	1	457	457	2.7E-227	–
PANTHER	PTHR47291 View details on PTHR47291 Search for proteins/transripts with this domain View external data on PTHR47291	1	457	457	2.7E-227	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	19	19	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	19	41	23	-	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	20	42	23	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	43	457	415	-	–
Gene3D	G3DSA:3.40.50.150 View details on G3DSA:3.40.50.150 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.150	138	211	74	1.9E-5	–
Pfam	PF08241 View details on PF08241 Search for proteins/transripts with this domain View external data on PF08241	143	182	40	5.5E-5	IPR013216 Show description in modal box View details on IPR013216 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53335 View details on SSF53335 Search for proteins/transripts with this domain View external data on SSF53335	143	194	52	4.33E-6	IPR029063 Show description in modal box View details on IPR029063 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008168 View details of GO:0008168 AmiGO InterPro QuickGO	Molecular function	Methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.	Subterm of View details of GO:0016741

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0691700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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