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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0692100 |
| Transcript ID | LotjaGi1g1v0692100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT1G61110.1 NAC domain containing protein 25; Swiss-Prot: sp|Q8GY42|NAC25_ARATH NAC transcription factor 25; TrEMBL-Plants: tr|A0A0B2SR85|A0A0B2SR85_GLYSO NAC domain-containing protein 29; Found in the gene: LotjaGi1g1v0692100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126014016..126016260) extracted from Lotus japonicus Gifu genome v1.2.
ACAACCACTTTGATCGATAATATCTGCAACTGATAGATATATTCCCTAGGTTCCTCAGTAGGCCTTATCTTCATGGACAA AGATCCTAATTTGGAAATCCAACTTCCTCCTGGATTTAGATTCCATCCTTCTGACGAGGAGCTCATCGTTCATTATCTTC GAAATAAAGTGACTTCATGTCCACTTCCTGCTTCGTTCATAGCAGAAATTGAACTTTACAAGTATAATCCATGGGAGCTG CCAAGTCTGTGTTTACAATTTCACTTATTTATTGTTTGGGGAGCTTTCTCATGCCCTCTCTAATTTCGAGAGTTCTGTTG CCCTCTTCCTGTTGATCACTAAAATGAAAATTTTAAAACTTATTACTATCTGTCATGACATGACATTCTATTTACACTGA TTGACCACTTACTGGTCAATTATGGCAGGACAACACTCATGAGGGGCATGAGAAAGTTTTCTTTATAGTTTTTTTGAAGG TATAGTAACTAAAGTAATGTTAGTTTTTCATTTTTAACAGGCAAAGCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAC TCCAAGGGACAGGAAATATCCCAAAGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGATACTGGAAAGCTACTGGGACTG ACAAACCAATTCTCACTTCCTGTGGGATGAAAAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCA AAAGGATCTAAAACTGATTGGGTCATGCATGAGTACAGGTTGCATGATTCAATGATCTCAAATTCTAAGCAAAGAGGGTC TATGAGAGTAGGTCATTTGCATAAGTTCAATTTTCCATCTTCTAAATTTTTTGATGATTTGTAGCCGCCACAAGGGTAGG ATTGGGTTTGAGTAAATACCACTTTGATCCCGAAAAGATATGGGACTGGTCACTTTCGTTCCCCTACTGAAGGAAATAGA CAAAATGGTCCCTGAAAGATAAATAAATTTTCTATTTATTTTCTGGGGATGAAAATGGATCACCTTTTCATTTTTCAGGA TTTCCTTGATCGTGATTTTAATATTTCAATGACCAAATTGAGTGTTTTTCATCTTTAGGAAGTAATTTGCTTATTTCCAT CTTTCAGGGACTAAGTTGACCGACTCCGTATCATTTAAGAATTGAAGAGACTATTAAGTTAACTCGATTGAGTTTTGACA GTTTGTTGCTTTTGTTTTTCAGCTGGATGAGTGGGTGCTTTGCCGGGTTCGGCAAAAAATCAGCAGCCCAAGAAGCACTT GGGAAGAATCTAATGAACATAGCTATGAACCAGTAACAAGCAACTTTCAACAAATAAATGAGAGCTCTTATTCTGAACCA GTCAAAAACTCTGCGCAGAATGAATTTCCAATGCTGCCTTATATTTTGGCTTCTAAGACTGTTCTGCCTAATTCCATTGG TATTTCCTCAAGCTCAGGCTTTGGCAGTAATGGAAATGATGATATTAAACCATATGCTTCACTTCATGAAGACAGCTTAA GCATAATGGAAGCTAAGTTCTTAGCATCTGCAACCGAGTGCTTGCTTAATCCGCTAAAGAGAAAAGCCACTGAAGAAAAT GAGTTGGACTTTTATGCTGTCAATAAAAAACTATGCAAAGAAGTTGATGACAGGGAGCAAAAACATGAGACAGATACTGC CATAGGCTATAACTTCAACTACTTCAACCAGTGGACTTCGATCATGCAACCACAATAGCTTCATATACATGAGTTACTTA GATGCATGTATATATGTGCAAAATTGTTTGTGTGAAACTGTGTACATATAGAACCTGTATAGATCTGTCTGCAGTATGGG TAGATGGAAAGTGAATTCTATATGTAAATAAGAAACAATGCAGTAGGTTACATGTCCTTACAGTTTGATTATTCTTTTCA GGACATAGGAATGTATATAGCTGTAAAAGTGTGGTATACTTTCTACACTCTGTTACAGCATATTATTTCAATTGCGTGTA TTGGGGATATGAGAGATAGTTTGAAGAATAAAGTGGCACCATAGTGCCACTTAGTTGCTCATTGTATTATAGTTTGAAAA TTAATAATGGTATTGATGCATTTCTTTCTTGTTTTCTTTCTATTTTGCATGACTGAAAAAATCCACTGCACTAAAACAAA CTAAACCATTTAGATAAATCATATTGTGAAGTTACTGATGTGTGTCTTTTAAGCTACTCAAAAAATTTTGACAGAAGCAA CTTCT
CDS sequence (LotjaGi1g1v0692100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAAGATCCTAATTTGGAAATCCAACTTCCTCCTGGATTTAGATTCCATCCTTCTGACGAGGAGCTCATCGTTCA TTATCTTCGAAATAAAGTGACTTCATGTCCACTTCCTGCTTCGTTCATAGCAGAAATTGAACTTTACAAGTATAATCCAT GGGAGCTGCCAAGCAAAGCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTACTCCAAGGGACAGGAAATATCCCAAAGGA GTGAGGCCTAATAGAGCAGCTGGTTCAGGATACTGGAAAGCTACTGGGACTGACAAACCAATTCTCACTTCCTGTGGGAT GAAAAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCAAAAGGATCTAAAACTGATTGGGTCATGC ATGAGTACAGGTTGCATGATTCAATGATCTCAAATTCTAAGCAAAGAGGGTCTATGAGAGTAGGTCATTTGCATAAGTTC AATTTTCCATCTTCTAAATTTTTTGATGATTTGTAG
Protein sequence (LotjaGi1g1v0692100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKDPNLEIQLPPGFRFHPSDEELIVHYLRNKVTSCPLPASFIAEIELYKYNPWELPSKALFGEEEWYFFTPRDRKYPKG VRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWVMHEYRLHDSMISNSKQRGSMRVGHLHKF NFPSSKFFDDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 6.2E-110 | – | |
| PANTHER | 1 | 155 | 155 | 6.2E-110 | – | |
| SUPERFAMILY | 9 | 144 | 136 | 1.23E-59 | ||
| ProSiteProfiles | 11 | 160 | 150 | 55.57 | ||
| Pfam | 12 | 138 | 127 | 1.9E-39 | ||
| Gene3D | 20 | 159 | 140 | 9.9E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0692100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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