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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0692100 |
Transcript ID | LotjaGi1g1v0692100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein,; TAIR: AT1G61110.1 NAC domain containing protein 25; Swiss-Prot: sp|Q8GY42|NAC25_ARATH NAC transcription factor 25; TrEMBL-Plants: tr|K7MZ04|K7MZ04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0692100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126014016..126016260) extracted from Lotus japonicus Gifu genome v1.2.
ACAACCACTTTGATCGATAATATCTGCAACTGATAGATATATTCCCTAGGTTCCTCAGTAGGCCTTATCTTCATGGACAA AGATCCTAATTTGGAAATCCAACTTCCTCCTGGATTTAGATTCCATCCTTCTGACGAGGAGCTCATCGTTCATTATCTTC GAAATAAAGTGACTTCATGTCCACTTCCTGCTTCGTTCATAGCAGAAATTGAACTTTACAAGTATAATCCATGGGAGCTG CCAAGTCTGTGTTTACAATTTCACTTATTTATTGTTTGGGGAGCTTTCTCATGCCCTCTCTAATTTCGAGAGTTCTGTTG CCCTCTTCCTGTTGATCACTAAAATGAAAATTTTAAAACTTATTACTATCTGTCATGACATGACATTCTATTTACACTGA TTGACCACTTACTGGTCAATTATGGCAGGACAACACTCATGAGGGGCATGAGAAAGTTTTCTTTATAGTTTTTTTGAAGG TATAGTAACTAAAGTAATGTTAGTTTTTCATTTTTAACAGGCAAAGCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAC TCCAAGGGACAGGAAATATCCCAAAGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGATACTGGAAAGCTACTGGGACTG ACAAACCAATTCTCACTTCCTGTGGGATGAAAAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCA AAAGGATCTAAAACTGATTGGGTCATGCATGAGTACAGGTTGCATGATTCAATGATCTCAAATTCTAAGCAAAGAGGGTC TATGAGAGTAGGTCATTTGCATAAGTTCAATTTTCCATCTTCTAAATTTTTTGATGATTTGTAGCCGCCACAAGGGTAGG ATTGGGTTTGAGTAAATACCACTTTGATCCCGAAAAGATATGGGACTGGTCACTTTCGTTCCCCTACTGAAGGAAATAGA CAAAATGGTCCCTGAAAGATAAATAAATTTTCTATTTATTTTCTGGGGATGAAAATGGATCACCTTTTCATTTTTCAGGA TTTCCTTGATCGTGATTTTAATATTTCAATGACCAAATTGAGTGTTTTTCATCTTTAGGAAGTAATTTGCTTATTTCCAT CTTTCAGGGACTAAGTTGACCGACTCCGTATCATTTAAGAATTGAAGAGACTATTAAGTTAACTCGATTGAGTTTTGACA GTTTGTTGCTTTTGTTTTTCAGCTGGATGAGTGGGTGCTTTGCCGGGTTCGGCAAAAAATCAGCAGCCCAAGAAGCACTT GGGAAGAATCTAATGAACATAGCTATGAACCAGTAACAAGCAACTTTCAACAAATAAATGAGAGCTCTTATTCTGAACCA GTCAAAAACTCTGCGCAGAATGAATTTCCAATGCTGCCTTATATTTTGGCTTCTAAGACTGTTCTGCCTAATTCCATTGG TATTTCCTCAAGCTCAGGCTTTGGCAGTAATGGAAATGATGATATTAAACCATATGCTTCACTTCATGAAGACAGCTTAA GCATAATGGAAGCTAAGTTCTTAGCATCTGCAACCGAGTGCTTGCTTAATCCGCTAAAGAGAAAAGCCACTGAAGAAAAT GAGTTGGACTTTTATGCTGTCAATAAAAAACTATGCAAAGAAGTTGATGACAGGGAGCAAAAACATGAGACAGATACTGC CATAGGCTATAACTTCAACTACTTCAACCAGTGGACTTCGATCATGCAACCACAATAGCTTCATATACATGAGTTACTTA GATGCATGTATATATGTGCAAAATTGTTTGTGTGAAACTGTGTACATATAGAACCTGTATAGATCTGTCTGCAGTATGGG TAGATGGAAAGTGAATTCTATATGTAAATAAGAAACAATGCAGTAGGTTACATGTCCTTACAGTTTGATTATTCTTTTCA GGACATAGGAATGTATATAGCTGTAAAAGTGTGGTATACTTTCTACACTCTGTTACAGCATATTATTTCAATTGCGTGTA TTGGGGATATGAGAGATAGTTTGAAGAATAAAGTGGCACCATAGTGCCACTTAGTTGCTCATTGTATTATAGTTTGAAAA TTAATAATGGTATTGATGCATTTCTTTCTTGTTTTCTTTCTATTTTGCATGACTGAAAAAATCCACTGCACTAAAACAAA CTAAACCATTTAGATAAATCATATTGTGAAGTTACTGATGTGTGTCTTTTAAGCTACTCAAAAAATTTTGACAGAAGCAA CTTCT
CDS sequence (LotjaGi1g1v0692100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAAGATCCTAATTTGGAAATCCAACTTCCTCCTGGATTTAGATTCCATCCTTCTGACGAGGAGCTCATCGTTCA TTATCTTCGAAATAAAGTGACTTCATGTCCACTTCCTGCTTCGTTCATAGCAGAAATTGAACTTTACAAGTATAATCCAT GGGAGCTGCCAAGCAAAGCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTACTCCAAGGGACAGGAAATATCCCAAAGGA GTGAGGCCTAATAGAGCAGCTGGTTCAGGATACTGGAAAGCTACTGGGACTGACAAACCAATTCTCACTTCCTGTGGGAT GAAAAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCAAAAGGATCTAAAACTGATTGGGTCATGC ATGAGTACAGGTTGCATGATTCAATGATCTCAAATTCTAAGCAAAGAGGGTCTATGAGACTGGATGAGTGGGTGCTTTGC CGGGTTCGGCAAAAAATCAGCAGCCCAAGAAGCACTTGGGAAGAATCTAATGAACATAGCTATGAACCAGTAACAAGCAA CTTTCAACAAATAAATGAGAGCTCTTATTCTGAACCAGTCAAAAACTCTGCGCAGAATGAATTTCCAATGCTGCCTTATA TTTTGGCTTCTAAGACTGTTCTGCCTAATTCCATTGGTATTTCCTCAAGCTCAGGCTTTGGCAGTAATGGAAATGATGAT ATTAAACCATATGCTTCACTTCATGAAGACAGCTTAAGCATAATGGAAGCTAAGTTCTTAGCATCTGCAACCGAGTGCTT GCTTAATCCGCTAAAGAGAAAAGCCACTGAAGAAAATGAGTTGGACTTTTATGCTGTCAATAAAAAACTATGCAAAGAAG TTGATGACAGGGAGCAAAAACATGAGACAGATACTGCCATAGGCTATAACTTCAACTACTTCAACCAGTGGACTTCGATC ATGCAACCACAATAG
Protein sequence (LotjaGi1g1v0692100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKDPNLEIQLPPGFRFHPSDEELIVHYLRNKVTSCPLPASFIAEIELYKYNPWELPSKALFGEEEWYFFTPRDRKYPKG VRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWVMHEYRLHDSMISNSKQRGSMRLDEWVLC RVRQKISSPRSTWEESNEHSYEPVTSNFQQINESSYSEPVKNSAQNEFPMLPYILASKTVLPNSIGISSSSGFGSNGNDD IKPYASLHEDSLSIMEAKFLASATECLLNPLKRKATEENELDFYAVNKKLCKEVDDREQKHETDTAIGYNFNYFNQWTSI MQPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 321 | 321 | 5.7E-137 | – | |
PANTHER | 1 | 321 | 321 | 5.7E-137 | – | |
SUPERFAMILY | 9 | 165 | 157 | 7.98E-63 | ||
ProSiteProfiles | 11 | 165 | 155 | 60.269 | ||
Pfam | 12 | 138 | 127 | 1.1E-38 | ||
Gene3D | 20 | 169 | 150 | 6.1E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0692100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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