Transcript — View — Lotus Base

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LotjaGi1g1v0692600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0692600
Transcript ID	LotjaGi1g1v0692600.1
Lotus japonicus genome version	Gifu v1.2
Description	Cell number regulator 8; TAIR: AT2G37110.1 PLAC8 family protein; Swiss-Prot: sp\|B4FUS3\|CNR8_MAIZE Cell number regulator 8; TrEMBL-Plants: tr\|I3SQW9\|I3SQW9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0692600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:126051880..126055371) extracted from Lotus japonicus Gifu genome v1.2.

AAATAAACAAGAACGAGAAGAAGAAGAAGACGCGGTTTGGTTTTCCACCGACTTCTCTTCTCTTCCAATCTCATCATCTC TCCATTTCTCTTCCCAATCTGTGTCTCTCTGGTGATTCATTCCTTCAATGGCAGATAACAACAAGCAATCTGATAACAAT CACGACGAGGCGAGTCCTCTTCTCCACCAACACCAACACCAACACCAACCCAAAGCTCCACCTGTTCCCCAATCACCACA AGACTTTCTTCTTGGATGGACCGCCGATGGCCACCCTGTACCCCACGGCAGCGTCGTCGGCCAGCCCATGTCCCGTTCTC CCTGGAACTCCTCCATCTGCGCCTGTCTTGGTCAAAACGACGACTTCTGCAGCAGCGATCTTGAAGTTTGTAAGTCCTCT CTTATTTATTTTTTTCATTGTGATTATATATCTGAGTCAAATTTTGTATCTTTTGAAATTGGGGGTAGGTTAGGGATGTA AAAATTCATTCTTTAATTTTTCAATCTAGCTGCAGGAAAATCAGATTTTTTGTTACTTGTTACAATTGTTTGTTTAGTTG AATCTAGATTTTGAAGGTTATCTTCTGCAGTTTAACCTTGTGTCTATGGAATTGGTTTTTCTAACCCTAAGCCATAAGGA TGGGTGGAAACTATTTTTATTATGTTAATGTCATGAAAACAAGGGTTGCTTCTCTTTATTGATAAGAAAAATGGATAAAG GAGCAGAAAACAAGTTTTTGTGGATCTTGAGCCTCTCTCTCTCTCTCCATTTGGTGTTTTTTATAATCTGGATACCTGAA ATATTTATCCACTTTGCTTATACTTGAATTCATGATGTTGGGTAGGTCTTCTTGGGAGTGTGGCTCCTTGTGTGTTGTAT GGAAGCAATGTCGAGAGGCTTGGATCTACTCCTGGGACATTTGTCAATCATTGCTTGCCTTATTCTGGACTGTATGTGAT TGGGAATTCCTGCTTTGGTTGGAATTGTCTTGCACCGCTGTTTTCCTATCCTAGCCGTACTGCTCTTCGTCGGAGGTTCA ATTTAGAGGTATGTTCCTTTTCTTTTTTTGCCCCTTATTATGTGGTTAGGAAGCCTCCTAGTTTGGTGGTGTATGTGAGG AATAATTGTAGGTGATCAGAGCTCGAGGAGGGCGAAGCCTCCTCCATGTTTATAAACATATTTAATTGGAAAATCGTTCC ATATAACTAAATGCTGGCTCAGCATTATTGTTCAAGAAGTGGTTCCCCTAATCCAAACTTTTAATTCTATAGTGCACCTG AGAATTTTGGTTATATGTTAAACCTTTTTAATGTGGTGATTTGCACAAATAGTATGGGTACAATGGATATATGTCAAGTG TTGTGAACCTGATTTGAGTCACTATGATTGAGTCACTATACCTCATGTCGTGCAATAAGGGAGTGATCTTAAATTCTTAA TTTGTAGCCTTTATTTTTTCATGAGGTTGAAAGGGAGCCTTGGCGCAACAGTAAAAAGTTGTTGCCATGTCATGGGTTCA AGTCATGGAAACAACCTCTTGTGTAAAAAGCAGGGTAAGACTGCGTACAATAGACCAAGTGGTCAGACCCACCACGGACC CGCGCATAGCGTGAGCTTTCATGCACCATGATGCCCGTTTATTGGGGGAAAAACTTTGGATTAATTGATCAATTTAGGTT TTGGTGAAGATTTTGTGGGGATTTCACAGGGGAAATGTAGCCATAGGATTCAAGGTGGGTAGATGAGATCAATTAGTACT TTCAATGTTATTTGCAATTAAAAAGTACCTCTAAGCTTTAAATGTATGATAACTTTTTATTGCACAACTGCAAGAATTGT GATTTTGTATGAGATGTAATGATGGATGAGTGGAACGCTAGACATGATAGGATTATGAATAAATGACTTAGAAAGTTAGA GTAGCATCCACTGTAAAAAGGATGGTAGAATTTCACCTTGCTGGTTGGTGAATGTGTAAAGAAGGCCCTTGTAAGCCCTA TTAATGAGCAGCTTATTTGGGGGTAATCCGATAACTAATAGATGAAGGGAGACTAAGAAAAATTATAGGTTCAATCATTA AGTATAATTTAGATTAAATGGTTTGTTGTTAGGCATCATTCACATTAAAACATTATTGTGTAGCTTACATAGTCAACCCT ACCTAGTGAGAGAAGACTGTTGTTTATGATAAGTCAGTTGGTCATGGTGTACTTAAGTTCGGTTCATTTTAATTCAGGTG TATCCAATATCAACTCTGTATTTTTCAACAGTACTTATGGGGTGGCCTCTAGTCTTTAATCTATATTTTCTTGTTTCCTA TCTAAGTTAATTCTAAATTATTAGAATATAGATTTACCTTTTCATTCCCACCTCTTGTTGTTCCCCTTATAACTCTCTCA AATAAGGATTTAGATTTGAAGAGCTATGCTATTATAGCATCATTTGATAGAGTTGGGTATATGGGCCACTAGCCAGACTT GACTGTTTAGACTTGATCCGCTGGTCCGCAAATAATATTATAGGACGGGGTTGGCCTGCGAAGCTGACAAGCATAGCATT TTGCTGGTCTACTTCCACACTGCCTAAGTCTGCAGGTTACGCGTCAGCCCACTAGTAAATAAATAAAAAATCTAAAATCT AAAAAATTGAAAGATTGTGCTTCCACAGACTTGGACCTATTCACCTTGCTCTTTCATGCAATCCCTTCTAGTGGGAAAAT GCTTAGGCGGTTGTTGTATACTTGTATTGCTCTCTTTGTCACTCACATGCAAACACAAGAATCCCATTCCTTTGTTATTA TGTGTAATATATAATAATTCTTTGCATTATTTCTGGTTCTTGGGAATCAGGGAAGCTGCGAGGCACTTAATAGGTCATGT GGGTGCTGTGGAAGCTTTATGGAAGATGAGGCGCAGCGTGAACAGTGTGAGTCAGCATGTGACTTGGCAACCCATGTCTT CTGTCATGTCTGTGCTCTTTGTCAAGAAGGACGTGAGCTCCGTCGCAGGCTTCCTCATCCTGGCTTTAATGCTCAACCAG TGTTGGTTATGATTCCCCCGGGAGAGCAGGCCATGGGACGCGCGGCTTGAAAATATTCTTCCTCATCTTGGAAGTGTTGT TCTTGTGAATTTTACTGTTTCATGTATGATTTGACATTGTTGAATGGTGTCTTACCTTGTCCAAAGAGAACCCTGGTTCT TTGAAATTGGTATCGATAAGAACATAAACACAATCATGTCATTAGTTTGGTCCCCTGCTGGTTTGTATTTCATATTATAT ATATGTATACGTGACGAATTTTTGTGCTTTTTGTCTATGTTTCATTATTTAGTTCAATGAACTTATGGAAGAGTAAGAGA TTGTTTGATTCGCTTCGCATTTTTCCGAATTCAAAATGTTATCAGAAATAATTTTTGGAAATGTTTTTCACAGGAAGAAA AACAGGTTGAACATAATGTTTTGTTAATTGTTAAATTGAAATACTTGTGACT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0692600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGATAACAACAAGCAATCTGATAACAATCACGACGAGGCGAGTCCTCTTCTCCACCAACACCAACACCAACACCA ACCCAAAGCTCCACCTGTTCCCCAATCACCACAAGACTTTCTTCTTGGATGGACCGCCGATGGCCACCCTGTACCCCACG GCAGCGTCGTCGGCCAGCCCATGTCCCGTTCTCCCTGGAACTCCTCCATCTGCGCCTGTCTTGGTCAAAACGACGACTTC TGCAGCAGCGATCTTGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGTGTGTTGTATGGAAGCAATGTCGAGAGGCTTGG ATCTACTCCTGGGACATTTGTCAATCATTGCTTGCCTTATTCTGGACTGTATGTGATTGGGAATTCCTGCTTTGGTTGGA ATTGTCTTGCACCGCTGTTTTCCTATCCTAGCCGTACTGCTCTTCGTCGGAGGTTCAATTTAGAGGGAAGCTGCGAGGCA CTTAATAGGTCATGTGGGTGCTGTGGAAGCTTTATGGAAGATGAGGCGCAGCGTGAACAGTGTGAGTCAGCATGTGACTT GGCAACCCATGTCTTCTGTCATGTCTGTGCTCTTTGTCAAGAAGGACGTGAGCTCCGTCGCAGGCTTCCTCATCCTGGCT TTAATGCTCAACCAGTGTTGGTTATGATTCCCCCGGGAGAGCAGGCCATGGGACGCGCGGCTTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0692600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADNNKQSDNNHDEASPLLHQHQHQHQPKAPPVPQSPQDFLLGWTADGHPVPHGSVVGQPMSRSPWNSSICACLGQNDDF CSSDLEVCLLGSVAPCVLYGSNVERLGSTPGTFVNHCLPYSGLYVIGNSCFGWNCLAPLFSYPSRTALRRRFNLEGSCEA LNRSCGCCGSFMEDEAQREQCESACDLATHVFCHVCALCQEGRELRRRLPHPGFNAQPVLVMIPPGEQAMGRAA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	20	20	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	44	44	-	–
PANTHER	PTHR15907:SF91 View details on PTHR15907:SF91 Search for proteins/transripts with this domain View external data on PTHR15907:SF91	7	233	227	8.6E-95	–
PANTHER	PTHR15907 View details on PTHR15907 Search for proteins/transripts with this domain View external data on PTHR15907	7	233	227	8.6E-95	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04749 View details on PF04749 Search for proteins/transripts with this domain View external data on PF04749	66	204	139	7.8E-18	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR01571 View details on TIGR01571 Search for proteins/transripts with this domain View external data on TIGR01571	81	206	126	1.7E-11	IPR006461 Show description in modal box View details on IPR006461 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0692600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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