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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0694200 |
| Transcript ID | LotjaGi1g1v0694200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT2G28550.3 related to AP2.7; Swiss-Prot: sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7; TrEMBL-Plants: tr|K7MYY2|K7MYY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126203704..126207019) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTTAATGTATTTTTTATCTATAGTATAAGGTTAATAATGTAAACACATTAAATAAAATACATGCATGCTAGACCTT AGCTATATATATATGTACGTCCTAATAATAACACCATTAAATACATGCAATCAGGTATATATGACAAGAACAATAAATTG AAAAGAAAAGTCCATTTGGACATTTGGTGATGCACTGATGCTTAGTTTCATATCCCCCAACACCATTCACTAACACACTA CCACTACTAACCAACACACTCACTCTTCTCACTTGCTGCATGATTCTAACTACTTTCTCTCTCTTTCTCATTCTCTTGCG CGCGTTCGTTCTTGTTTCACTCACTCACTCATGGATAGCATTGCATTTTTTCATTTCCTTTGGATTCCCTCAAATCGTAA CTAACCAGTCCAGTAACCACCACCACTTTCACTTTCCCTCCAAACTTCTCTAACCGCCTCTCTCTCTCTTGCAATGCTGG ATCTCAACCTCAACGCCGCCGACTCCGTTCACATGGAAAGCTCCGGCAGCTTCGACTCCTCCGTCGTCAACGCCGCCGAT ACCGAAGATTCCTCCTCCTTCGGCGAAGCCTACGCGTACAACTTCGCCATCCTCAACACCAGCACCGCCGTCGACGAACC CACCACCACCTCCGCGGCAGTTCACCTCCCCTACGCCGGTGACCACTCTGTTCGGACGATCGAGTTTTTTCCGACCACCG AGTCGCAGAGATGGTCAGATTTCTTGCCGGATCATCCCGGCGCCGTGCCGGAACAGACGATCGTCGCTCCCCGGCCGCAG CAGGTGAAGAAGAGCCGACGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGGACGGGAAG ATGGGAATCGCATATATGGTTAGTTAGCTATAGCTATTGATGATGATTCTGTTCTCTGTTTTCTGTGTATAGTTTTACTT TTTCGCTTTTGTGCTCTCTGTATACATGCTACTTTTTCTGAATCCGTTTTTATTGTACAGGGATTGTGGGAAACAAGTGT ACTTAGGTGAAGAAGCTAAACACTGCATTCAATTTGTACAAGAATTTGTTCAATCTTACTTTCTTTGTTGATTGTGGTAC TTGTTCTGATGAACATTGGCTTTTCCTTTTCTTGATTATAGGTGGATTTGATACTGCACATGCTGCAGCGAGGTGAATTG ATTTCGTAGTTTGGTATTGTTTGTTTTCTTGATCGTGCATGTGAAGTGTTTTTCATGGGTTTTGTACAAATTTCAGGGCG TATGATCGAGCTGCAATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTCAACGTGAGCGATTATGATGAAGATATAAA GCAGGTTAGTGAAGAGATTGATGATTCTTGTGTAGATTTTGGTTAGGTGTTGAAATTAAGTTCCAATTGAATGTAGCCTC GATTTTCAATTTGTGTAGATGAGTAACTTCACCAAGGAAGAGTTTGTGCATATTCTGCGGCGGCAGAGCACGGGTTTCTC AAGGGGGAGCTCCAGATACAGGGGAGTTACTCTCCATAAATGTGGGAGATGGGAAGCTCGTATGGGGCAGTTTCTTGGGA AGAAGTGAGTAAACCCCTTTGATTCAATTGCATTAATTCATACCTGAACCTCATCTGCTTTGAATTTTTATCAGCTTCCA TTTATGTCAGTTTTCACTTTCAGTTTCCATTTGCATTTTAGTTAAATGATGTCTCAAATTTATTGAAGTGGGAATTCATA ATTTGTAAACAGCTTGGTTTTCATTGTGTATTCAGTTCTTACATTGGCCTGGGTTTATTGCTTGTCTGCAGGTACATATA TCTTGGGCTATTCGATAGTGAATTAGAGGCTGCAAGGTTTACCAATTCCATATCAGAATATTTCAAATGAAATGCCTAAA CTATTTGGTTTTTCTTCTGAACTTTGTGCTATATTTACTTGCTGTGCAATGATTCCAGAGCTTATGACAAGGCAGCTATA AAATGCAATGGAAAGGAAGCAGTGACAAACTTTGAGGCCAGCTCATATGAGGGGGAGCTAATTTCTCAGTCTGATAATGA AGGTACTAGTTATTTGTGGTTCAGGCTAATCTTTTTCTTGCTTAAAATATGTTTATTGATTGAACTATTAAGTCAAATGT ATCAACTAACACATTGATTCTGACATTTTGCACAGATAACAAGCGAAGTATTGATCTTAACTTGGGCATAGCTCCCCCTT CTACCTATGATGGTCAAATGATGAATATTGAACACCAAAATGTGAGTGGTTTACAAGTTAATCGTAGCTGGGATGGTATT TCTGTTGATAATAGTGTTATGGTAAAGCTGGAGAAATGTACATATGGATTGAATTGAATTCTTGTTGAAGTCTGCAATTT CAAAAGTCCCTGTGATTTTTCATCTGCTTCTTTATTTGCAGTAGTTGTATGACTTGTATCTATACTAATGATCATATTTG CTTAATAGTTTGAGCACTCTGGATCAAGATCACTGAGTGTTCAACCATCTTATGGCTTCTCCATGGCATCTGAGCATCAG CCTTCAGGCTGGAATGGAGCCAATTTCTTTCCCATCTCCAAGGTGATTTTATTATACTCTGGCTGCTATAAGAATGTTGC CTTATTTTCATGTGTTAGTGGTGCTAAGTCAGTTTCATTTTTATGAACAGGAAAGAGCAATAGAGAAGAGGATGGAAACT GCTCCCATACCAAATTGGACTTGGCAACAAGTCCAAGGTCATTATGGTGGAGGAGCAACTCTGATTCCACCCTTCTCTGC TGCAGCATCATCAGGATTCCCTTCAACAATGATACCAATACCATCAGCAGCTGCGGATAGTCAAATTCAGTTTCCTAACA TGCAGTTCCTCCACCCTAATTTTTCTCCTTCCATCACCAACTCCAACACCATATCCCCTTTCTACTGAAAAAGCACAGCT AGCTAGGGAGAGAGCAATAGCATTGATTCCGAATCTTTCTAGCCTTAGTAGTCTTTCTTGCATGGGAGGTAGGCGATATG ATTGACAAACTAGTAGGAAATTGAATTGTTTGGTTGCTTTTACCATTTGTCTTTTAATATTGTACTAATTTTCTTCAATG CAAAGAAATTCCATGCCGCCAAGCATGGTTTGAACCTTTGAACTCTTTTTTTTACTATTTTGAGACGACTATAATGAACA TGCATCTACTCTGGTGGTATCCAAGATTCCAAGTTCAGTGTCGGTGCCTTTCTATCTTGAAATATCTGAAAGGTTGATTT GGATTTTGGACCATTTGATTATATTTTGAAGTGATG
CDS sequence (LotjaGi1g1v0694200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGATCTCAACCTCAACGCCGCCGACTCCGTTCACATGGAAAGCTCCGGCAGCTTCGACTCCTCCGTCGTCAACGC CGCCGATACCGAAGATTCCTCCTCCTTCGGCGAAGCCTACGCGTACAACTTCGCCATCCTCAACACCAGCACCGCCGTCG ACGAACCCACCACCACCTCCGCGGCAGTTCACCTCCCCTACGCCGGTGACCACTCTGTTCGGACGATCGAGTTTTTTCCG ACCACCGAGTCGCAGAGATGGTCAGATTTCTTGCCGGATCATCCCGGCGCCGTGCCGGAACAGACGATCGTCGCTCCCCG GCCGCAGCAGGTGAAGAAGAGCCGACGTGGACCGAGGTCGCGAAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGGA CGGGAAGATGGGAATCGCATATATGGGATTGTGGGAAACAAGTGTACTTAGGTGGATTTGATACTGCACATGCTGCAGCG AGGGCGTATGATCGAGCTGCAATCAAGTTCCGTGGCGTTGATGCGGATATCAATTTCAACGTGAGCGATTATGATGAAGA TATAAAGCAGATGAGTAACTTCACCAAGGAAGAGTTTGTGCATATTCTGCGGCGGCAGAGCACGGGTTTCTCAAGGGGGA GCTCCAGATACAGGGGAGTTACTCTCCATAAATGTGGGAGATGGGAAGCTCGTATGGGGCAGTTTCTTGGGAAGAAGTAC ATATATCTTGGGCTATTCGATAGTGAATTAGAGGCTGCAAGAGCTTATGACAAGGCAGCTATAAAATGCAATGGAAAGGA AGCAGTGACAAACTTTGAGGCCAGCTCATATGAGGGGGAGCTAATTTCTCAGTCTGATAATGAAGATAACAAGCGAAGTA TTGATCTTAACTTGGGCATAGCTCCCCCTTCTACCTATGATGGTCAAATGATGAATATTGAACACCAAAATTTTGAGCAC TCTGGATCAAGATCACTGAGTGTTCAACCATCTTATGGCTTCTCCATGGCATCTGAGCATCAGCCTTCAGGCTGGAATGG AGCCAATTTCTTTCCCATCTCCAAGGAAAGAGCAATAGAGAAGAGGATGGAAACTGCTCCCATACCAAATTGGACTTGGC AACAAGTCCAAGGTCATTATGGTGGAGGAGCAACTCTGATTCCACCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCA ACAATGATACCAATACCATCAGCAGCTGCGGATAGTCAAATTCAGTTTCCTAACATGCAGTTCCTCCACCCTAATTTTTC TCCTTCCATCACCAACTCCAACACCATATCCCCTTTCTACTGA
Protein sequence (LotjaGi1g1v0694200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLNLNAADSVHMESSGSFDSSVVNAADTEDSSSFGEAYAYNFAILNTSTAVDEPTTTSAAVHLPYAGDHSVRTIEFFP TTESQRWSDFLPDHPGAVPEQTIVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAA RAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSRYRGVTLHKCGRWEARMGQFLGKKY IYLGLFDSELEAARAYDKAAIKCNGKEAVTNFEASSYEGELISQSDNEDNKRSIDLNLGIAPPSTYDGQMMNIEHQNFEH SGSRSLSVQPSYGFSMASEHQPSGWNGANFFPISKERAIEKRMETAPIPNWTWQQVQGHYGGGATLIPPFSAAASSGFPS TMIPIPSAAADSQIQFPNMQFLHPNFSPSITNSNTISPFY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 440 | 439 | 1.3E-181 | – | |
| PANTHER | 2 | 440 | 439 | 1.3E-181 | – | |
| SUPERFAMILY | 123 | 182 | 60 | 4.64E-16 | ||
| Gene3D | 123 | 182 | 60 | 3.2E-19 | ||
| Pfam | 123 | 172 | 50 | 6.4E-9 | ||
| ProSiteProfiles | 124 | 180 | 57 | 17.794 | ||
| SMART | 124 | 186 | 63 | 5.3E-33 | ||
| CDD | 124 | 182 | 59 | 2.65357E-12 | ||
| Gene3D | 215 | 275 | 61 | 1.5E-17 | ||
| SUPERFAMILY | 215 | 274 | 60 | 2.09E-16 | ||
| CDD | 215 | 275 | 61 | 6.32388E-25 | ||
| Pfam | 215 | 265 | 51 | 1.6E-8 | ||
| ProSiteProfiles | 216 | 273 | 58 | 15.435 | ||
| SMART | 216 | 279 | 64 | 1.1E-30 | ||
| PRINTS | 217 | 228 | 12 | 3.7E-6 | ||
| PRINTS | 255 | 275 | 21 | 3.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0694200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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