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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0696900 |
| Transcript ID | LotjaGi1g1v0696900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT2G37390.2 Chloroplast-targeted copper chaperone protein; Swiss-Prot: sp|Q58FZ0|NAKR2_ARATH Protein SODIUM POTASSIUM ROOT DEFECTIVE 2; TrEMBL-Plants: tr|I3SDY5|I3SDY5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0696900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126466765..126469820) extracted from Lotus japonicus Gifu genome v1.2.
GTGCCATACCAGTATGAATGAAATGAAATAAAAGGTCCAAACTCATGTCTTGGGTAAGTTTAAAAGCTTAAACATTAACT TCCCACTTTAATTACTTCCATTATCACACATTTAAACAATAAAAACTTTTAATTGAATTTTGAATTTCCCATTTTCAATC CTCTCTCTCTCACTCTGTCCTCAATCCCAAACGAATTGAAGTTTAAAAGCAGTCAGTTCCAACCTTCCTTCTGGTTCAAC TTCCTCTCTATCTCTCCCTTCACTGAACCACTGTTTCTTCTCATTCATCACCAACCAGAAATGAAAACCATAGATATCTT CTGTGCATCACAGGCCTCCACAGCCATATGTCTCAGCACGGATCAACCCTCCTCCTCCTCCTCCTCCATCTCCTCCTCTT CCAACACCATCCAATTTGGTGGCAGAGCCATTGACCGCCACAACCCCATCATCACAGATCCTAAAAGAACCCCTTCCAGA GACTTCACCGCTCCCAGTTCTTCCTCTCAGCCACCACCACTCACAGACCCCAAACCTTCCCATGATCCCCATAAGGCCAA GAAAAACACCATTCCAAAACCAGGTGAGAGGAAAAAGAAAAAAGCAACAAAGGGTCATGATGATGAGAAGAAGAAGAAGA AATGTGAAGCTGCAGCAGAAAAGATAACTGAACACATCACCAACAATTTCTCTTGTAAACCAATTGACAGTGTTCTGAGG AGGAGCTGGGTTAAGCCACCTTCTGATTTGAATACACCTCCTGGTTCTTCAAGATATTTGCTTGGTGGCTCTGCAGCTTC CTTTGATTTTGACCCTGTTCTGGCTTTAACCAAAGTTGATAACAAAAAAGCTGAAGTTGTTCATGGAGATGAAACCAATC ATTCGTCTAAACGCTCTGGCTCCTCTGTTCCAAAATCTGCTTCCTCAGACCAGGTTAGTTATCTCTCACTCTCTGTTTTT CTAATGTCATGCACATAAATTATGTGCTTTTGTTTCATGTCAAGGCCTCTCAACCATTCTATTAGTCTATGAGTGTGTTT GGGTACACATTTGATAACTCCAGAATTTATTCTTATAGAGTAAAATCATTATGGATGAAAATATAGATGTTTGTTAGTTA CTTTGCAGAATTGATTTCAGTCTCAACATCAATTGTGCTAGAAGCTAGAGAATGGGCATTATGTGCTAAACACTTAAACA TAATCAATTTTGAGATTTTCACACTGAATTTCGTTACTTTACGTTACAAAAACCACTTTTTTGTAAATGTAAACATAAGT CACATCATTTTAACGTTCTTTTACCGTAATCAATTTTATGGGGAATCAATTTTGCCAACATTAATAGAAACACACACTAT ATATAAGATGTATGTGGACATATTTTTTTCATTTATGGTATGTTTCTTGGAGTTGGATAGAGGAATCAGCAAGTTTAGCT TGGCAGCAGCTAGCATGTATTTGAGGAATGAACGATTATGGATTTAACTGAATTGGACAATTGACAATGAAACAATGAAA AACTTCAATGTTATGTAATCTTTGCATATTATGGATGGACTAAAATGCTGATCGGAGTGATTTGAATGAATTTTTGTGCA GGTTGTGGTCTTGAGGGTTTCTCTGCACTGCAAAGGTTGTGAAGGGAAAGTGAGAAAACACCTCTCTAGAATGCAAGGTA TGCAACCAACTCACCTCATATCTCTTAAAATCTTCTAGTTCAATAACCATAAATAGAAATTATAGAATGGTGTTGAAGAA AAAAGAAAGGGCAGCCAAGTGCATCAAAGCTCTCGCTATGTGCGGTTCCATGGAAGAGTCCGTACACTTGGTTAGTTGGT ATATTGTAGGCAGTATTATGCTATTTTTTACACAAGAGACTTTTACCAGGACTTGATCACCCGTTATAGATGTTCAGATT AATTAGTGAAAGGGCTTGATTTCCTGAAATGAGAAAACTTTTTCTATGGGTCTTTTTTATTTATTTATTATTATGTTCAA TTTAACTTCAAAACCATTTCCTTTTGGGCAGGTGTTACATCCTTCAATATAGACTTTGCTGCAAAGAAGGTTACAGTAGT TGGCGATGTGACTCCATTGAGTGTATTGGCAAGCATATCAAAGGTGAAGAATGCTCAATTTTGGCCACTATCTGCTTCAG CAATTGGATCAGGTGCCACAGAAATTAAGAAAACAAATTTGATCTAATTGAAGAGGGAATTAAAGTAGACTACTGGTTGT TGTATGCTTTGAGTCTGAATTAGGTAGTGATTTAACTTTGTAAATGTGAATTTAGCATGTTGAGCCGTGGATTTGAAGAG AGATTAGTTTATTTAGAAAGGAACCTTATCTGTTTTCTAAACAACTGAAGAAAAAAAAAAAAAAAACAACGAATAATTTT GTGCCACAATTTTATTGCAAATTAAGACTTTGTTGTGTCATTGAAATAGAGCCATGAGCTGTGCCTTTTCGTGCTGAAAA TAGTGGTGGCACTTGATGCGATTCGTGAGGAAAAGAATGAACATATATTCTTGTTGAGTAGTATAAAGTTGCAACACTTG TTTTCAAAGCTACCAAAAAATAGTTTTATAATAGCACTAATTTTTAAATATCCAACAAAGTTTCCGCTTTTCGTCCACTT ATAATCAGTTTTTAAAAGCCTACCTAAAGTTAAGGCACAAGTTTGATTTGTTTCTGTAATTTTGTAATTTCTTGTTAGAC TCTTGATTCACTCTAGAGAGTAAAATAAATTATATTTATCATTGATGGAGTTAGTTTATTTTTTTTAATAGATAATTAAT ATTAATAGTTGTCATGACTTACTTTACTCTTTAAAGTAGCTATCTCACTTTAGAGGAGTCAAATCCATATACTATTTTTC TTAATGCTCAATGCCTAAAAATCTATTTAAAAATTGTAATTTATAAATAATATTGAAATAAACCATAAAAATCCTAGTTC TAAATAAATTATAAATTTATTTACAAATAGGATTTGCTTAAGTTCAAACTTTTATGTTTTAATATGTAAATAGGTCAACA AATACATAAATTTAAG
CDS sequence (LotjaGi1g1v0696900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAACCATAGATATCTTCTGTGCATCACAGGCCTCCACAGCCATATGTCTCAGCACGGATCAACCCTCCTCCTCCTC CTCCTCCATCTCCTCCTCTTCCAACACCATCCAATTTGGTGGCAGAGCCATTGACCGCCACAACCCCATCATCACAGATC CTAAAAGAACCCCTTCCAGAGACTTCACCGCTCCCAGTTCTTCCTCTCAGCCACCACCACTCACAGACCCCAAACCTTCC CATGATCCCCATAAGGCCAAGAAAAACACCATTCCAAAACCAGGTGAGAGGAAAAAGAAAAAAGCAACAAAGGGTCATGA TGATGAGAAGAAGAAGAAGAAATGTGAAGCTGCAGCAGAAAAGATAACTGAACACATCACCAACAATTTCTCTTGTAAAC CAATTGACAGTGTTCTGAGGAGGAGCTGGGTTAAGCCACCTTCTGATTTGAATACACCTCCTGGTTCTTCAAGATATTTG CTTGGTGGCTCTGCAGCTTCCTTTGATTTTGACCCTGTTCTGGCTTTAACCAAAGTTGATAACAAAAAAGCTGAAGTTGT TCATGGAGATGAAACCAATCATTCGTCTAAACGCTCTGGCTCCTCTGTTCCAAAATCTGCTTCCTCAGACCAGGTTGTGG TCTTGAGGGTTTCTCTGCACTGCAAAGGTTGTGAAGGGAAAGTGAGAAAACACCTCTCTAGAATGCAAGGTGTTACATCC TTCAATATAGACTTTGCTGCAAAGAAGGTTACAGTAGTTGGCGATGTGACTCCATTGAGTGTATTGGCAAGCATATCAAA GGTGAAGAATGCTCAATTTTGGCCACTATCTGCTTCAGCAATTGGATCAGGTGCCACAGAAATTAAGAAAACAAATTTGA TCTAA
Protein sequence (LotjaGi1g1v0696900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTIDIFCASQASTAICLSTDQPSSSSSSISSSSNTIQFGGRAIDRHNPIITDPKRTPSRDFTAPSSSSQPPPLTDPKPS HDPHKAKKNTIPKPGERKKKKATKGHDDEKKKKKCEAAAEKITEHITNNFSCKPIDSVLRRSWVKPPSDLNTPPGSSRYL LGGSAASFDFDPVLALTKVDNKKAEVVHGDETNHSSKRSGSSVPKSASSDQVVVLRVSLHCKGCEGKVRKHLSRMQGVTS FNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPLSASAIGSGATEIKKTNLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 290 | 290 | 6.6E-104 | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 290 | 290 | 6.6E-104 | – | |
| MobiDBLite | 19 | 113 | 95 | - | – | |
| MobiDBLite | 19 | 41 | 23 | - | – | |
| MobiDBLite | 91 | 107 | 17 | - | – | |
| MobiDBLite | 185 | 209 | 25 | - | – | |
| Gene3D | 208 | 272 | 65 | 2.9E-15 | – | |
| ProSiteProfiles | 211 | 268 | 58 | 10.933 | ||
| SUPERFAMILY | 211 | 268 | 58 | 2.62E-13 | ||
| CDD | 214 | 267 | 54 | 1.67315E-12 | ||
| Pfam | 215 | 267 | 53 | 1.6E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0696900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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