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LotjaGi1g1v0697700.2

Overview

Field Value
Gene ID LotjaGi1g1v0697700
Transcript ID LotjaGi1g1v0697700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Diaminopimelate epimerase; TAIR: AT3G53580.1 diaminopimelate epimerase family protein; Swiss-Prot: sp|Q9LFG2|DAPF_ARATH Diaminopimelate epimerase, chloroplastic; TrEMBL-Plants: tr|I3S5C7|I3S5C7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0697700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126553469..126559198) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCATAACCGCCACCATTTCCGTTCCAGTTTCAACACCCATTCACCGCTCTCTTCCCGCTGTCAATCTCTTCCGCTC TTCTTCTTCTTTCGCCCCACCGCAACGCACTTTCAACTACCTCAACTCTCGCCTCGTTGCTTCCTCCATGAGCACCGAAG CCCCCGTCAAAACAACCTCCTCCTCCGCCGCTTCATCCCTGAACTCCGGCAGTGGCTTCCTCCATTTCGCCAAGTATCAC GGTCTCGGCAACGATTTCGTTTTGGTCAGTGACTCTACTCACACCCCTTTTGATTCCTCTCATGGAATAACTCTTTTTTC TAATTCAATTCGCTATTATGGATAGATTGATAATAGAGATTCTTCAGAGCCTAAGATCAGCTCAGAGAAAGCTGTGCAAA TTTGTGATCGTAATTTTGGTGTTGGGGCTGATGGGGTTATCTTTCTATTACCTGGCATCAATGGCACTGACTATACCATG AGGATTTTCAACTCTGATGGTAGTGAACCTGAGGTATTACTATTTCTTCTTTACTGCATGTTTTGATTTAATGGGTTGGT TTTAGAACTGACAAGTTTTTTTTTTCTTACTTTCACCATTGTTTTGCTTCCCTAGATGTGTGGCAATGGAGTGCGGTGCT TCGCTAAATTCATTTCCCAGGTTGAGAATATACATGGGAGGCATAGGTTTGATCATTTTTCTCTAGTATTTCTTTAAGAA AATTTTCTATTTTGGTCCCTACCCTTTTTTCAGTGATTTCTTTCTATCCTGCTGCTTATGTCTTGTTGTTTGTGAATTCT GTTTCTGGGGTAATTTTTCATATGCGTAACGGGAAAAATGATTGACGGTGTTTTTTAGTTTTTTACCATGTTCTAGTTGC TTCTTCAATCATTATTATTATTTTAATGATGAGCTTAATTGAATTTCATCTAACAATGTGTTGCAGTTTTACTATACATA CTGGTGCTGGCCTGATTGTTCCTGAAGTCTTGGAGGATGGAAATGTATGTTGTTCTGTTTAGCAAATATTTGCAATTTAC TTATTGACATGTGATATTGTTCAAATGCACCAGCATGTTGCTTCCAAGGTTCCTTCTTATGTGTTGTTGTGAATTGGTTT GATGTCGAGAAAGATGTTCCTTTTTTGTCTCTTATCTGGGATTGGTTCATTTTCTTCAGCTTGATAGGCATAATGCTAAT TGTTTCAGGTCAGAGTCGATATGGGGGAGCCGGTTCTTAAAGCATCAGATGTACCTACTAAATTACCTGCAAATAAGGAT GGAGCTGTTGTTAAATCAGAGCTAGATGTAGATGGAGTTATCTGGAATGTGACTTGTGTTAGCATGGGAAATCCACACTG TATCACCTTCAGTAGAAAAGGAAGCCAGGTTTTTATTTTTGACATAATAAATATTCCGTAGTTACTTACAATTTCATTTT ATATATTATACATTGCATTCTGGGTCTATTAAAAGGAATGAAACACTGTATTGGAGTATGAAAAAAAGACATCGATCAGC AACATGATGTTACACTCAAATACATAGGCATTCTCTCACGCACACAATTGAATGCATAACCATTTATATTAAAAGAAAAA TAGTTCTGTTGAATGATTTATAGGAATCTTTTTAATCACATCCTTTACTGTCAGCTTTCATCTTCTTTTGACAGTTTTAC AAGAACTTAACATTTTTTGTACTTTTCACATGCATGATATTTGTTTTAATCCTTGTTGCTACAGAGCTTGCTTGTTGATG AATTGAAGCTAGCAGAAATTGGTCCGAAATTTGAACATCATGAGATGTTCCCTGCACGAACTAACACAGGTTTGATTTAT CTATTTCAATTATCAGAATATGATTGCCAACTTTCTTTTGATGTTTATCCTATGCCCTCTCCCTCAATTTTTCATTTCTG CTGCTAGTAGAATTTTAATTTTTTTTGCTTCCTTGGGCAATATAACATGCATGCGTTGCTTGCCAACAGCCAGTTACTTA AGCATTCTGTCTTAATGGTGATATACTGATTTGAAACTATTCTTAGTTTAGTGCTTGGAAACATGATGTAGTTGGTATTT TTCGTGGGACTTTGTCGGACTCGTGCCTTCCACATGTGCAGAGAATACAGTATTTATTCAACTATGTCTAGCTTCGATGT GATGTTCAGTCCCCCAAGCATGTTTTCCACTGAAATTTCAACCTTCAATGCTTTTATTCCATAAACTTGACCCAAATGGT CTAGATGTGTGTAGTGTATCATCGCTCTAATCCTGTTGCAAATTTGCAATTCCACACTCATTAATTATATGGACTCTTGT GGTGATTTAATATGCAGAGTTTGTGCAAGTTTTGTCTAATTCACACCTGAAGATGCGTGTTTGGGAGCGTGGAGCAGGTT AGAACATCAAATATCCAAGCTTTGTATTGTTGGTGTGGTTAGAGCATGTCTCAGATGCCTCATTTTGTACGAGAGAGCTC ATTTTAGGTTTCCCCCCTTAAACTGTTATTGTGCAGGAGCAACACTTGCCTGTGGAACTGGAGCTTGTGCTCTTGTTGTA GCAGCAGTTCTTGAGGGTCATACTGGAAGAGTAAGTTTCCTACTTTGCTTGTAACAATATGAAGCTGTTGATTTTTTCAT TAAAAATTTGATAGTATGAACAGTGCTCGTGAACAGTAGCAGTTAGATTGCAGTTAGAAAGTTATTATTTAATTATTTGT TGGGGTAGTTATTGGGTTAGTTATTATTAGTTATTTACATCAGTTTATGTTAGTTATATTCTATCAAAACTGCCTAGGGG TGGTTATTAAATTTCTGGTTATAAATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTGGGTGGTTGTCTTAGGGA GAGACTGGACTCTCAAAATTCCAGAATTTGTAGGAGAGAACTGGCTCTCGAACACCAGTACTTCCATAAATATTCTGTAA TAAATTTGGTTCCTATCAATTTGGTATCAGAGCACCATCCAGGTGCTGTGGTGCAATTGAATTGTGAAGAAATGGAGAAG ACTGCAATTAATAACTAATAAGAGGGAAGGTAAGATGATTCCAACCTTTGATGGTAAAGAGGCTTACTGGTGGTTGATCA AAGTAGAGCAGCACTGTGAGGCCATGGAAATGGCTGAAGAGAAGAAGTTCTCGGAGGCTGAGATGGCTTTGACCGGAGAT GCTTTCTTCTGGTGGTATTTCTGGAAAAGAAGCAACCAGAATGCAAAATGGTGGGATTTTGTGAAGGCTTTACTGAAGAA ATTCCAACCAGAAATGGATCCTGACATACCAGTGTATGTTCAAGATTCTGAGGAAGAAGAAAGCCCGAGAATGTATGCAG TTTTGAGGAATGGAAGAGAGGGTCATTCGATGGAAGAAAATCCAGAGATAAAAGTTGATTCTGTTAATTCAATGGATAAA GATTTTCTTTCAAAGGAGAATCCAAAGGAACCAGGAAAGAAGGACTTCGGGATTCCCTTTCTTGGTGAAACAGAGGTACC ATTGATGGTGAATTGGTGGCCAGAGAAGAGTGATGCCCTACAATTGCAGAAAACTTGGAGCACTTCAATGGTGGAGAAAA ACTTAGCCCTTGAGATGCAGAGGATCAAACTTGAAACAATACTTGCAAGAAGTGCGAGGCTAAATAACAGAGTTCGACGG ACGCAACCAACCAAGGTGCTGGTCACGCGCCCTCCGCCAAAGCCACCAGATTCAACTTTCCTTTGTGTAAGAACAGTTGT GAATCTGTGGGCAGAGTGCAAGAAGCTTTTCCTGCGACCCCCGCCAAAGCCACCAGATAAAGGCTTCCTTTGTGTGAGAA TAATTGGGAAAAATGTGGCCATAGTGTGCAAGAAACTTTTCCGGATTATCACCTTGGGGACAAGGTGGATCTTTAGGGCG GGGTATTGATAGGATGAACAGTGCTCGTGAACAGTAGCAGTTAGATTGCAGTTAGAAAGTTATTATTTAATTATTTGTTG GGGTAGTTATTGGGTTAGTTATTATTAGTTATTTACATCAGTTTATGTTAGTTATGTTCTATCAAAACTGCCTAGGGGTG GTTATTAAATTTCTGGTTATAAATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTGGGTGGTTGTCTTAGGGAGA GACTGGACTCTCAAAATTCAAGAATTTGTAGGAGAGAACTGGCTCTCGAACACCAGTACTTCCATAAATATTCTGTAATA AATTTGGTTCCTATCAAAATTTCATCATAATTTATAATGACATAATCAATGCTATCAAATATTGGCCATGGCGGAACCTT ATGGTGGGTTTTTAGCTCTCGCCATGGCCGATATCCCGCCATAATCCACTATATGCCATCATTATTTGTCATATATAGAG TTTTTGGCTTTCCGCTATATGCCATAATAAATGTAAATTGTCAATGTCTTCTTGTAATCGTGAATTCTCTCTCTATATTA TTTGTTGAAAGCAAACCTGTCAATTTCTGATTTCATAAAAGCTTAGGTTTATGCAAAAGAAATCCGCTTGGGTTTAAATA TATAGCCCATTTGGGTTTTCGTCTGCTGCTGTCTGTGGAGGGAGGTTGTTTGAAGCTGATACTCTTGTCCGAGAGGGGGA ATGGATGGTTGTAGGCTTGTAGCTGCATTTCTCTCCTTGGACACAATCCTCCCTACTCAAATGGCGGCTATGGCTGTTAG TGAAGGACTTATTACGGTATATTCTCATAGCCGGGGATGAACAACACTCACCCAGTCACCCTCTATAGTCTTACCTTGTC CTCAAAGTGATATTCAGGAAATTGCTCCTGAATGGTTCCCAGGTGTCCTCACAATCAGTTAAATCCTTCCAATGCGGCAG AACTTCCATCTCCCCCTCTTGATTAGCTCAAATCAAACTTCCCTAGCTTCAGCGGAATAAACCTGTAAGTCCATCTCCTC TGGCAAGACTGGCTGTTACCCTTGTAGGTGCTACTGCCTTCCTCAAAAGTGACACATGGCACACCAGATGAATAAGGGAA CCTGATGGTAAATCTAGATCTAGCTGATATGCAACTTCTCCAGTCTGTTCACTAAAATCTTGGTCTGCTGGATAGTAGAA CTATTATTGCGGCAGCTATTTGTAGCATGCCTTTTCAGTAGCATTGATCTATTTGTAGATATATATTGAAGCTTTTTCTA CCAGTTGCAAATCAGCATAGTTCTTGTATGCTTGATTGAGTAGAGTACCTATAGCAATTGTTCTTGGACTTATTTTCTAA CTATGTCTTTCACTCTTTTGAGATGATATTGATGTTATATAAGCCATTATAATATGGCTTTGGAAGGTGTGATTCCATTT ATTGGTCAAATGTGTTTCAGCTGAAAAAATATGTAAGTTTAAATATGTCGTGTTCTTATAAATATATAAATATTTTGATC TTAGTCCCTCTACAATTTGAGTTCTGGTAAGTGTGTCTAGTTTTTTAAAGTGAGCACCTTAGGTCCTTGCTCCTTACCCT ATCATAAGTTTGTTTAAGTGTTTACATGCCATCCGATCTGAATACTAAACTAACATTAAGTGATTCTTTCTTCTGTCTGT CAATTTGTTACAGAATTGCACGGTTGATCTCCCTGGAGGGCCTCTTCAGATTGAATGGAGGGAAGAAGATAATCATGTCT ATATGACAGGCTCCGCAGATCTAGTGTATTACGGATCTTTGCCCCTTTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0697700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCATAACCGCCACCATTTCCGTTCCAGTTTCAACACCCATTCACCGCTCTCTTCCCGCTGTCAATCTCTTCCGCTC TTCTTCTTCTTTCGCCCCACCGCAACGCACTTTCAACTACCTCAACTCTCGCCTCGTTGCTTCCTCCATGAGCACCGAAG CCCCCGTCAAAACAACCTCCTCCTCCGCCGCTTCATCCCTGAACTCCGGCAGTGGCTTCCTCCATTTCGCCAAGTATCAC GGTCTCGGCAACGATTTCGTTTTGATTGATAATAGAGATTCTTCAGAGCCTAAGATCAGCTCAGAGAAAGCTGTGCAAAT TTGTGATCGTAATTTTGGTGTTGGGGCTGATGGGGTTATCTTTCTATTACCTGGCATCAATGGCACTGACTATACCATGA GGATTTTCAACTCTGATGGTAGTGAACCTGAGATGTGTGGCAATGGAGTGCGGTGCTTCGCTAAATTCATTTCCCAGGTT GAGAATATACATGGGAGGCATAGTTTTACTATACATACTGGTGCTGGCCTGATTGTTCCTGAAGTCTTGGAGGATGGAAA TGTCAGAGTCGATATGGGGGAGCCGGTTCTTAAAGCATCAGATGTACCTACTAAATTACCTGCAAATAAGGATGGAGCTG TTGTTAAATCAGAGCTAGATGTAGATGGAGTTATCTGGAATGTGACTTGTGTTAGCATGGGAAATCCACACTGTATCACC TTCAGTAGAAAAGGAAGCCAGAGCTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGTCCGAAATTTGAACATCATGA GATGTTCCCTGCACGAACTAACACAGAGTTTGTGCAAGTTTTGTCTAATTCACACCTGAAGATGCGTGTTTGGGAGCGTG GAGCAGGAGCAACACTTGCCTGTGGAACTGGAGCTTGTGCTCTTGTTGTAGCAGCAGTTCTTGAGGGTCATACTGGAAGA AATTGCACGGTTGATCTCCCTGGAGGGCCTCTTCAGATTGAATGGAGGGAAGAAGATAATCATGTCTATATGACAGGCTC CGCAGATCTAGTGTATTACGGATCTTTGCCCCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0697700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAITATISVPVSTPIHRSLPAVNLFRSSSSFAPPQRTFNYLNSRLVASSMSTEAPVKTTSSSAASSLNSGSGFLHFAKYH GLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFLLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFISQV ENIHGRHSFTIHTGAGLIVPEVLEDGNVRVDMGEPVLKASDVPTKLPANKDGAVVKSELDVDGVIWNVTCVSMGNPHCIT FSRKGSQSLLVDELKLAEIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACALVVAAVLEGHTGR NCTVDLPGGPLQIEWREEDNHVYMTGSADLVYYGSLPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31689
46 357 312 2.7E-138
IPR001653
PANTHER
PTHR31689:SF0
46 357 312 2.7E-138 –
SUPERFAMILY
SSF54506
74 203 130 2.55E-42 –
Hamap
MF_00197
74 358 285 37.469
IPR001653
TIGRFAM
TIGR00652
75 356 282 1.3E-93
IPR001653
Gene3D
G3DSA:3.10.310.10
76 354 279 5.9E-117 –
Pfam
PF01678
76 197 122 2.0E-33
IPR001653
ProSitePatterns
PS01326
137 151 15 -
IPR018510
Gene3D
G3DSA:3.10.310.10
193 351 159 5.9E-117 –
SUPERFAMILY
SSF54506
218 356 139 4.85E-48 –
Pfam
PF01678
230 350 121 6.0E-29
IPR001653

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0008837
Molecular function Diaminopimelate epimerase activity Catalysis of the reaction: LL-2,6-diaminopimelate = meso-2,6-diaminopimelate.
Subterm of
GO:0009089
Biological process Lysine biosynthetic process via diaminopimelate The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0697700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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