Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0009089

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Lysine biosynthetic process via diaminopimelate
Full defintion The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate.
Subterm of

Relationships

The relationship of GO:0009089 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0009089, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCgo_curators

Associated Lotus transcripts 25

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj1g3v3704970.1
– PREDICTED: diaminopimelate epimerase, chloroplastic-like [Glycine max] gi|356572353|ref|XP_003554333.1|
GO terms
3
Lj1g3v4580610.1
– PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi|502161433|ref|XP_004512163.1|
GO terms
2
Lj1g3v4580610.2
– PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like [Cicer arietinum] gi|502161433|ref|XP_004512163.1|
GO terms
2
Lj2g3v0435490.1
– Dihydrodipicolinate reductase [Medicago truncatula] gi|357444055|ref|XP_003592305.1|
GO terms
3
Lj3g3v2723870.1
– PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cicer arietinum] gi|502157868|ref|XP_004510938.1|
GO terms
2
Lj3g3v2723890.1
– PREDICTED: dihydrodipicolinate synthase 2, chloroplastic-like [Glycine max] gi|356505643|ref|XP_003521599.1|
GO terms
2
Lj4g3v3113380.1
– PREDICTED: aspartate-semialdehyde dehydrogenase-like [Glycine max] gi|356524624|ref|XP_003530928.1|
GO terms
7
Lj5g3v2027220.1
– Dihydrodipicolinate reductase [Medicago truncatula] gi|357444055|ref|XP_003592305.1|
GO terms
3
Lj5g3v2027220.2
– Dihydrodipicolinate reductase [Medicago truncatula] gi|357444057|ref|XP_003592306.1|
GO terms
3
LotjaGi1g1v0463600.1
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1L6T8|I1L6T8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463600
GO terms
2
LotjaGi1g1v0463600.2
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1L6T8|I1L6T8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463600
GO terms
2
LotjaGi1g1v0463600.4
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT3G60880.1 dihydrodipicolinate synthase 1; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|G7L0A3|G7L0A3_MEDTR 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi1g1v0463600
GO terms
2
LotjaGi1g1v0690900.1
– Diaminopimelate decarboxylase; TAIR: AT5G11880.1 Pyridoxal-dependent decarboxylase family protein; Swiss-Prot: sp|Q94A94|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic; TrEMBL-Plants: tr|A0A151TUY1|A0A151TUY1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0690900
GO terms
2
LotjaGi1g1v0697700.1
– Diaminopimelate epimerase; TAIR: AT3G53580.1 diaminopimelate epimerase family protein; Swiss-Prot: sp|Q9LFG2|DAPF_ARATH Diaminopimelate epimerase, chloroplastic; TrEMBL-Plants: tr|I3S5C7|I3S5C7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0697700
GO terms
3
LotjaGi1g1v0697700.2
– Diaminopimelate epimerase; TAIR: AT3G53580.1 diaminopimelate epimerase family protein; Swiss-Prot: sp|Q9LFG2|DAPF_ARATH Diaminopimelate epimerase, chloroplastic; TrEMBL-Plants: tr|I3S5C7|I3S5C7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0697700
GO terms
3
LotjaGi3g1v0390800.1
– 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT3G59890.1 Dihydrodipicolinate reductase, bacterial/plant; Swiss-Prot: sp|Q8LB01|DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic; TrEMBL-Plants: tr|A0A0B2Q308|A0A0B2Q308_GLYSO Dihydrodipicolinate reductase 2, chloroplastic; Found in the gene: LotjaGi3g1v0390800
GO terms
4
LotjaGi3g1v0431700.1
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42948|DAPA_TOBAC 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1JKK4|I1JKK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0431700
GO terms
2
LotjaGi3g1v0431700.2
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42800|DAPA_SOYBN 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I3S7Q6|I3S7Q6_LOTJA 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi3g1v0431700
GO terms
2
LotjaGi3g1v0431800.1
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42948|DAPA_TOBAC 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|A0A151TBN5|A0A151TBN5_CAJCA 4-hydroxy-tetrahydrodipicolinate synthase; Found in the gene: LotjaGi3g1v0431800
GO terms
2
LotjaGi3g1v0431900.1
– 4-hydroxy-tetrahydrodipicolinate synthase; TAIR: AT2G45440.1 dihydrodipicolinate synthase; Swiss-Prot: sp|Q42948|DAPA_TOBAC 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic; TrEMBL-Plants: tr|I1JKK4|I1JKK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0431900
GO terms
2
LotjaGi4g1v0458700.1
– Aspartate-semialdehyde dehydrogenase, N-acetyl-gamma-glutamyl-phosphate reductase; TAIR: AT1G14810.1 semialdehyde dehydrogenase family protein; Swiss-Prot: sp|P49420|DHAS_PROMA Aspartate-semialdehyde dehydrogenase; TrEMBL-Plants: tr|I1KQD8|I1KQD8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0458700
GO terms
7
LotjaGi5g1v0304200.1
– 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant; Swiss-Prot: sp|Q9FJ82|DAPB3_ARATH Dihydrodipicolinate reductase-like protein CRR1, chloroplastic; TrEMBL-Plants: tr|A0A151U6L0|A0A151U6L0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0304200
GO terms
3
LotjaGi5g1v0304200.2
– 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant; Swiss-Prot: sp|Q9FJ82|DAPB3_ARATH Dihydrodipicolinate reductase-like protein CRR1, chloroplastic; TrEMBL-Plants: tr|K7N3N1|K7N3N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304200
GO terms
3
LotjaGi5g1v0304200.3
– 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant; Swiss-Prot: sp|Q9FJ82|DAPB3_ARATH Dihydrodipicolinate reductase-like protein CRR1, chloroplastic; TrEMBL-Plants: tr|I1NGQ2|I1NGQ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304200
GO terms
3
LotjaGi5g1v0304200.4
– 4-hydroxy-tetrahydrodipicolinate reductase; TAIR: AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant; Swiss-Prot: sp|Q9FJ82|DAPB3_ARATH Dihydrodipicolinate reductase-like protein CRR1, chloroplastic; TrEMBL-Plants: tr|K7N3N1|K7N3N1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0304200
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0055114
Biological process Oxidation-reduction process 1 4.00