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LotjaGi1g1v0697800.1

Overview

Field Value
Gene ID LotjaGi1g1v0697800
Transcript ID LotjaGi1g1v0697800.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger protein, putative; TAIR: AT2G37430.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11; TrEMBL-Plants: tr|I3T1W0|I3T1W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0697800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126565252..126566108) extracted from Lotus japonicus Gifu genome v1.2.

ATTCAATTAACACATTCTTTCTAAACACTTGAACATTTTTCTACCCTCACCTCAAACGGTCAAACCCCACTAGAGATTGT ATCTTTCTAGACAAACACATTTTGCTATACCATTCAAAGATTGTTTATATCATTGTTAGCTATGAAGAGACAGAGAGACA ATGAAGGAACAGAGAGTTTCGATTTAACAAACTGTCTTATGTTAATGCTGTCTTATCCAAAACAGAAAAGAACCATTAAT GAGAGTGTTGAATTTGAGTGCAAAACCTGCAACCGCAAGTTCTCATCATTTCAAGCTCTGGGTGGCCACAGGGCTAGCCA CAACCACAAGAGAGTGAAGCTGGAAGAACAGGCCAAGACTCCGAGTTTGTGGGACAACAACAAACCCAGAATGCACGTGT GCTCTGTTTGTGGGTTGGGGTTCTCTCTGGGACAGGCTCTTGGAGGCCACATGAGAAAACACAGAAACAATGAAGGGTTT TCTTCTTCTTCTTCTTCTTCTTATTCAATCAAGGAAGAAGTTGCAAAATTTCCAGTTTTGAAAAGATTGAATAGTAGTAA GAGGGTCTTGTGCTTGGACTTGGATTTGAACTTCCCCCCTATGGAGAATGACTTCATGTTTGGGATGAAATCACCAAGCC CTGTTCCACTTTCTCTGTTCTGATGATCAGCCTCACATTTTTTTCTTTACCCTTTGATCTGGACATGTATTCTTTCAATT CTTTTGTGTAAGAAACTAAAAATTCATTCATTTTTTTTCACTTATATACAGATTATTGATTCTTGTTAAAGCCTTTCTTT CTTATTTATTGTCATTCGTAAGCAGTGAGCAGATATAAAAGTACTACTTGTCCAAAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0697800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAGACAGAGAGACAATGAAGGAACAGAGAGTTTCGATTTAACAAACTGTCTTATGTTAATGCTGTCTTATCCAAA ACAGAAAAGAACCATTAATGAGAGTGTTGAATTTGAGTGCAAAACCTGCAACCGCAAGTTCTCATCATTTCAAGCTCTGG GTGGCCACAGGGCTAGCCACAACCACAAGAGAGTGAAGCTGGAAGAACAGGCCAAGACTCCGAGTTTGTGGGACAACAAC AAACCCAGAATGCACGTGTGCTCTGTTTGTGGGTTGGGGTTCTCTCTGGGACAGGCTCTTGGAGGCCACATGAGAAAACA CAGAAACAATGAAGGGTTTTCTTCTTCTTCTTCTTCTTCTTATTCAATCAAGGAAGAAGTTGCAAAATTTCCAGTTTTGA AAAGATTGAATAGTAGTAAGAGGGTCTTGTGCTTGGACTTGGATTTGAACTTCCCCCCTATGGAGAATGACTTCATGTTT GGGATGAAATCACCAAGCCCTGTTCCACTTTCTCTGTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0697800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKRQRDNEGTESFDLTNCLMLMLSYPKQKRTINESVEFECKTCNRKFSSFQALGGHRASHNHKRVKLEEQAKTPSLWDNN KPRMHVCSVCGLGFSLGQALGGHMRKHRNNEGFSSSSSSSYSIKEEVAKFPVLKRLNSSKRVLCLDLDLNFPPMENDFMF GMKSPSPVPLSLF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR26374:SF355
2 158 157 6.7E-55 –
PANTHER
PTHR26374
2 158 157 6.7E-55 –
Gene3D
G3DSA:3.30.160.60
23 117 95 1.9E-9 –
ProSiteProfiles
PS50157
38 65 28 10.554
IPR013087
SMART
SM00355
38 60 23 0.19
IPR013087
Pfam
PF13912
38 60 23 1.5E-9 –
SUPERFAMILY
SSF57667
38 107 70 8.29E-8
IPR036236
ProSitePatterns
PS00028
40 62 23 -
IPR013087
SMART
SM00355
85 107 23 0.3
IPR013087
Pfam
PF13912
85 108 24 2.6E-8 –
ProSiteProfiles
PS50157
85 112 28 9.494
IPR013087
ProSitePatterns
PS00028
87 107 21 -
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0697800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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