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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0700100 |
| Transcript ID | LotjaGi1g1v0700100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HSP20-like chaperones superfamily protein; TAIR: AT2G37570.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|Q09614|PTC1_CAEEL Protein patched homolog 1; TrEMBL-Plants: tr|I1N9Z0|I1N9Z0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126831755..126833364) extracted from Lotus japonicus Gifu genome v1.2.
GCGTATAAGGTTATTTTGTTGAATTGTTTATGGGATGGCAAGATTGAACCTAGAAGCAATACAAGTCTTGAAGAAGGAGA CAAGGTAAAATGGGTGATTCTCTTCATACTTGTTTGTCAATGGAGAATCATCACCCATCCACGCTCTTGTCCATGGATTC AAGTGCCTCTTCTCATGAGGAGCTGGATTTGGAGATGAATCCGCAGATCATACTATCTGGTCCGCCGGATATCAATTTAC CTCTGTCCGCAGAGCGAAGCCCTCCTCCGCAGCTATGGAATTCTGATCCCTGTGATATTTTAGATGTTGGACTTGGCACT CAAGGATATAAGACTGAGAGTTTACTCAGCCTTCCGAAAACCGGAAGGAAATGCTCCAAGCGAGTTGATAGCATATGGGG TGCTTGGTTTTTCTTCCGATTTTACTTCAAGCCTGTGTTGCATGAAAAATCTATGGCCAAGGCTACCAGGGACAGCAATG GTGTTTCAGGGTTTGATAAAACTGATCTCAAGCTTGATGTTTTCATGGTTCAACATGACATGGAAAACATGTACATGTGG GTTTTCAAGGAGAGGCCGGAAAATGCGCTGGGCAAGATGCAGCTGAGAAGTTACATGAATGGGCACTCCCGCCAAGGGGA GAACCCTTTTCCTTTCAGTGTTGAGAAGGGCTTTGTTCGATCACATAGGATGCAGCGAAAGCATTATAGGGGACTTTCAA ACCCCCAATGTGTGCATGGCGTTGAGGTTGTGCCATCACCCAATTTGATGGGGCTGGATAAGGACGAGCAGAAGAGGTGG ATGGAACTCACTGGCCGAGATTTAAATTTCAAGATCCCTCCTGAAGCAAGCGATTTCAGTTCCTGGAGAAATCTACCCAA CATGGAGTTTGAGCTTGAGAGACCGCCTCACCCAATTAAGAGTGCTCCTCCTCCTCCTGCTAAGAAACTGCTTAATGGGT CTGGTTTGAATTTGTCAACACATCTTTCTAGCCATAGTAACGGTGATGGTATTGATCTATCTCCTGTCAACGGCAAGAAG AGGAAGGACTTATGTCTTTATGGGAATGGGAATGGGAGTGAGGAAGAATGTTACTTGCCTGTTAATCCTCTACCTGATAG GATTCCAGAAATTGAAATGCACCCAAGTGAGCATCACTGGATGAATGACTTCAGCGGGGTTATGAACAATGTTTATGGAC CCGTTACGGCTGCAAAAACTATATACGAGGATGAAGAAGGCTACATGATTATTATCAGTCTTCCATGTGTGGATCTCTCA AGTGTCAAAGTTTCTTGGAGGAACACTCTCACTCGAGGCATCATAAAGGTTTCTTGTTTGAGCACATCCGGGAAGCCTTT GATCAAGAGACATGACAGGACATTTAAGCTCACAGATCCATCACCAGAGCACTGCCCTCCTGGGGAGTTTGTTCGTGAAA TCCCTCTATCAACTCGAATTCCCGAAGACGCCAATATAGAAGCATTCTATGATGGGCCAGGATCAGTTCTTGAGATCATG GTGCCAAAACTTCGTGTGGGATCAGAAGAGCATGAAGTTCGTGTCTGCCTTCGCCCTCATCTTGGAGGGAATGATCTTAT GTTGACTTGA
CDS sequence (LotjaGi1g1v0700100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATTCTCTTCATACTTGTTTGTCAATGGAGAATCATCACCCATCCACGCTCTTGTCCATGGATTCAAGTGCCTC TTCTCATGAGGAGCTGGATTTGGAGATGAATCCGCAGATCATACTATCTGGTCCGCCGGATATCAATTTACCTCTGTCCG CAGAGCGAAGCCCTCCTCCGCAGCTATGGAATTCTGATCCCTGTGATATTTTAGATGTTGGACTTGGCACTCAAGGATAT AAGACTGAGAGTTTACTCAGCCTTCCGAAAACCGGAAGGAAATGCTCCAAGCGAGTTGATAGCATATGGGGTGCTTGGTT TTTCTTCCGATTTTACTTCAAGCCTGTGTTGCATGAAAAATCTATGGCCAAGGCTACCAGGGACAGCAATGGTGTTTCAG GGTTTGATAAAACTGATCTCAAGCTTGATGTTTTCATGGTTCAACATGACATGGAAAACATGTACATGTGGGTTTTCAAG GAGAGGCCGGAAAATGCGCTGGGCAAGATGCAGCTGAGAAGTTACATGAATGGGCACTCCCGCCAAGGGGAGAACCCTTT TCCTTTCAGTGTTGAGAAGGGCTTTGTTCGATCACATAGGATGCAGCGAAAGCATTATAGGGGACTTTCAAACCCCCAAT GTGTGCATGGCGTTGAGGTTGTGCCATCACCCAATTTGATGGGGCTGGATAAGGACGAGCAGAAGAGGTGGATGGAACTC ACTGGCCGAGATTTAAATTTCAAGATCCCTCCTGAAGCAAGCGATTTCAGTTCCTGGAGAAATCTACCCAACATGGAGTT TGAGCTTGAGAGACCGCCTCACCCAATTAAGAGTGCTCCTCCTCCTCCTGCTAAGAAACTGCTTAATGGGTCTGGTTTGA ATTTGTCAACACATCTTTCTAGCCATAGTAACGGTGATGGTATTGATCTATCTCCTGTCAACGGCAAGAAGAGGAAGGAC TTATGTCTTTATGGGAATGGGAATGGGAGTGAGGAAGAATGTTACTTGCCTGTTAATCCTCTACCTGATAGGATTCCAGA AATTGAAATGCACCCAAGTGAGCATCACTGGATGAATGACTTCAGCGGGGTTATGAACAATGTTTATGGACCCGTTACGG CTGCAAAAACTATATACGAGGATGAAGAAGGCTACATGATTATTATCAGTCTTCCATGTGTGGATCTCTCAAGTGTCAAA GTTTCTTGGAGGAACACTCTCACTCGAGGCATCATAAAGGTTTCTTGTTTGAGCACATCCGGGAAGCCTTTGATCAAGAG ACATGACAGGACATTTAAGCTCACAGATCCATCACCAGAGCACTGCCCTCCTGGGGAGTTTGTTCGTGAAATCCCTCTAT CAACTCGAATTCCCGAAGACGCCAATATAGAAGCATTCTATGATGGGCCAGGATCAGTTCTTGAGATCATGGTGCCAAAA CTTCGTGTGGGATCAGAAGAGCATGAAGTTCGTGTCTGCCTTCGCCCTCATCTTGGAGGGAATGATCTTATGTTGACTTG A
Protein sequence (LotjaGi1g1v0700100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDSLHTCLSMENHHPSTLLSMDSSASSHEELDLEMNPQIILSGPPDINLPLSAERSPPPQLWNSDPCDILDVGLGTQGY KTESLLSLPKTGRKCSKRVDSIWGAWFFFRFYFKPVLHEKSMAKATRDSNGVSGFDKTDLKLDVFMVQHDMENMYMWVFK ERPENALGKMQLRSYMNGHSRQGENPFPFSVEKGFVRSHRMQRKHYRGLSNPQCVHGVEVVPSPNLMGLDKDEQKRWMEL TGRDLNFKIPPEASDFSSWRNLPNMEFELERPPHPIKSAPPPPAKKLLNGSGLNLSTHLSSHSNGDGIDLSPVNGKKRKD LCLYGNGNGSEEECYLPVNPLPDRIPEIEMHPSEHHWMNDFSGVMNNVYGPVTAAKTIYEDEEGYMIIISLPCVDLSSVK VSWRNTLTRGIIKVSCLSTSGKPLIKRHDRTFKLTDPSPEHCPPGEFVREIPLSTRIPEDANIEAFYDGPGSVLEIMVPK LRVGSEEHEVRVCLRPHLGGNDLMLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 506 | 506 | 1.1E-295 | – | |
| PANTHER | 1 | 506 | 506 | 1.1E-295 | – | |
| Gene3D | 348 | 483 | 136 | 2.1E-6 | ||
| CDD | 378 | 480 | 103 | 2.24917E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0700100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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