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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008978
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 103 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.595s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0074429.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 28015499 28016888 -
3 domain predictions
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Lj0g3v0082839.1
n.a. class II small heat shock protein Le-HSP17.6 [Arachis hypogaea] gi|194466081|gb|ACF74271.1| chr0 32609928 32610701 -
3 domain predictions
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Lj0g3v0085889.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 34500480 34501551 +
3 domain predictions
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Lj0g3v0105529.1
n.a. PREDICTED: protein SGT1 homolog B-like [Glycine max] gi|356559728|ref|XP_003548149.1| chr0 45284779 45289521 +
3 domain predictions
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Lj0g3v0108079.2
n.a. PREDICTED: 21.7 kDa class VI heat shock protein-like [Glycine max] gi|356543958|ref|XP_003540425.1| chr0 46657401 46659805 -
3 domain predictions
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Lj0g3v0164099.1
n.a. PREDICTED: trichohyalin-like [Cicer arietinum] gi|502178319|ref|XP_004516224.1| chr0 77613306 77616623 -
3 domain predictions
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Lj0g3v0197289.1
n.a. 22.7 kDa class IV heat shock protein [Medicago truncatula] gi|357493537|ref|XP_003617057.1| chr0 96199614 96201400 +
3 domain predictions
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Lj0g3v0197499.1
n.a. 22.7 kDa class IV heat shock protein [Medicago truncatula] gi|357495825|ref|XP_003618201.1| chr0 96306483 96306920 +
2 domain predictions
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Lj0g3v0235519.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 122056288 122057025 +
3 domain predictions
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Lj0g3v0317519.1
n.a. PREDICTED: nudC domain-containing protein 2-like [Cicer arietinum] gi|502129292|ref|XP_004500252.1| chr0 165875265 165878999 -
3 domain predictions
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Lj0g3v0325479.1
n.a. PREDICTED: 17.6 kDa class I heat shock protein-like [Cicer arietinum] gi|502103884|ref|XP_004492385.1| chr0 170069654 170071004 +
3 domain predictions
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Lj0g3v0354739.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356564017|ref|XP_003550253.1| chr0 186851010 186851747 -
3 domain predictions
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Lj1g3v0244530.1
n.a. PREDICTED: 18.2 kDa class I heat shock protein [Glycine max] gi|356501111|ref|XP_003519372.1| chr1 2373869 2374896 +
3 domain predictions
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Lj1g3v0451230.1
n.a. 16.6 kDa heat shock protein [Medicago truncatula] gi|357477445|ref|XP_003609008.1| chr1 6084490 6085869 -
3 domain predictions
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Lj1g3v0982040.1
n.a. PREDICTED: nuclear migration protein nudC-like [Glycine max] gi|356516049|ref|XP_003526709.1| chr1 12372335 12375450 -
3 domain predictions
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Lj1g3v0983070.1
n.a. HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao] gi|508776276|gb|EOY23532.1| chr1 12387323 12388531 +
3 domain predictions
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Lj1g3v1061500.1
n.a. PREDICTED: small heat shock protein, chloroplastic [Glycine max] gi|356509172|ref|XP_003523325.1| chr1 13114637 13116729 +
3 domain predictions
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Lj1g3v1442490.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357443643|ref|XP_003592099.1| chr1 17345461 17346391 -
3 domain predictions
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Lj1g3v1787650.1
n.a. PREDICTED: 17.9 kDa class II heat shock protein-like [Glycine max] gi|356507036|ref|XP_003522277.1| chr1 21228101 21229094 -
3 domain predictions
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Lj1g3v3404430.1
n.a. n.a. chr1 39266129 39273164 -
3 domain predictions
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Lj1g3v3975730.1
n.a. 15.4 kDa class V heat shock protein [Medicago truncatula] gi|357508747|ref|XP_003624662.1| chr1 46977978 46978928 +
3 domain predictions
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Lj1g3v3978180.1
n.a. PREDICTED: 22.7 kDa class IV heat shock protein-like [Solanum lycopersicum] gi|460380798|ref|XP_004236141.1| chr1 47217207 47218689 -
3 domain predictions
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Lj1g3v4898000.1
n.a. HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao] gi|508703154|gb|EOX95050.1| chr1 59375641 59378349 +
3 domain predictions
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Lj2g3v0520140.1
n.a. RecName: Full=22.0 kDa class IV heat shock protein; Flags: Precursorgi|18661|emb|CAA44882.1| heat shock protein [Glycine max] gi|232282|sp|P30236.1|HSP41_SOYBN chr2 6899667 6900392 -
3 domain predictions
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Lj2g3v1574130.1
n.a. PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 3-like [Cicer arietinum] gi|502161818|ref|XP_004512293.1| chr2 25078866 25085822 +
3 domain predictions
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Lj2g3v2061250.1
n.a. PREDICTED: protein SGT1 homolog [Cicer arietinum] gi|502159855|ref|XP_004511553.1| chr2 31129652 31133792 +
3 domain predictions
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Lj2g3v2061250.2
n.a. PREDICTED: protein SGT1 homolog [Cicer arietinum] gi|502159855|ref|XP_004511553.1| chr2 31129652 31133792 +
3 domain predictions
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Lj2g3v2926310.1
n.a. 22.0 kDa heat shock protein [Medicago truncatula] gi|357493539|ref|XP_003617058.1| chr2 38211579 38213038 +
3 domain predictions
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Lj2g3v2926320.1
n.a. 22.0 kDa heat shock protein [Medicago truncatula] gi|357493539|ref|XP_003617058.1| chr2 38214598 38216228 +
3 domain predictions
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Lj2g3v3121040.1
n.a. Small heat shock protein C4 [Medicago truncatula] gi|357494367|ref|XP_003617472.1| chr2 40288725 40292621 +
3 domain predictions
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Lj3g3v0807600.1
n.a. PREDICTED: DNA ligase 1-like [Cicer arietinum] gi|502127222|ref|XP_004499609.1| chr3 9700874 9703091 -
2 domain predictions
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Lj3g3v0807620.1
n.a. n.a. chr3 9706468 9711032 +
3 domain predictions
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Lj3g3v0807630.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357455709|ref|XP_003598135.1| chr3 9709745 9711838 -
3 domain predictions
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Lj3g3v2174830.1
n.a. Shikimate kinase-like protein [Medicago truncatula] gi|357485087|ref|XP_003612831.1| chr3 27046520 27050227 +
3 domain predictions
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Lj3g3v2188200.1
n.a. PREDICTED: 26.5 kDa heat shock protein, mitochondrial-like [Glycine max] gi|356526211|ref|XP_003531712.1| chr3 27229368 27234658 -
3 domain predictions
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Lj3g3v2576000.1
n.a. PREDICTED: 17.4 kDa class III heat shock protein-like [Glycine max] gi|356520108|ref|XP_003528707.1| chr3 31480442 31481014 -
3 domain predictions
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Lj3g3v3236650.1
n.a. PREDICTED: 18.5 kDa class I heat shock protein-like [Glycine max] gi|356538960|ref|XP_003537968.1| chr3 39868152 39869198 -
3 domain predictions
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Lj3g3v3640130.3
n.a. hsp23 [Medicago sativa] gi|339792764|gb|AEK12766.1| chr3 44369110 44370360 -
3 domain predictions
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Lj4g3v0644110.1
n.a. Calcyclin-binding protein [Medicago truncatula] gi|357475237|ref|XP_003607904.1| chr4 10408049 10410179 +
3 domain predictions
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Lj4g3v1512560.1
n.a. HSP20-like chaperones superfamily protein [Theobroma cacao] gi|508715656|gb|EOY07553.1| chr4 22818914 22819452 +
2 domain predictions
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Lj5g3v1473480.1
n.a. Heat shock protein-like protein [Medicago truncatula] gi|357441615|ref|XP_003591085.1| chr5 21599368 21601798 -
3 domain predictions
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Lj5g3v1889420.1
n.a. Ripening regulated protein DDTFR8 [Medicago truncatula] gi|357497475|ref|XP_003619026.1| chr5 26938397 26942429 +
3 domain predictions
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Lj5g3v1949720.1
n.a. 17.6 kDa class I heat shock protein [Medicago truncatula] gi|357443643|ref|XP_003592099.1| chr5 27457000 27457930 +
3 domain predictions
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Lj6g3v0857610.1
n.a. PREDICTED: small heat shock protein, chloroplastic-like [Cicer arietinum] gi|502128828|ref|XP_004500095.1| chr6 8522179 8523866 -
3 domain predictions
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Lj6g3v1067120.1
n.a. Small heat shock protein C4 [Medicago truncatula] gi|357494367|ref|XP_003617472.1| chr6 12402857 12406515 +
3 domain predictions
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Lj6g3v1878810.1
n.a. PREDICTED: 15.4 kDa class V heat shock protein-like [Glycine max] gi|356555652|ref|XP_003546144.1| chr6 20567619 20568277 +
3 domain predictions
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LotjaGi1g1v0037900.1
n.a. Heat shock protein, putative; TAIR: AT1G06460.1 alpha-crystallin domain 32.1; Swiss-Prot: sp|Q4UJB1|HSPC4_RICFE Small heat shock protein C4; TrEMBL-Plants: tr|I3SGI4|I3SGI4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037900 LjG1.1_chr1 5277626 5283734 +
3 domain predictions
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LotjaGi1g1v0059400.1
n.a. Protein restricted tev movement 2; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D5K211|RTM2A_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I3T6E1|I3T6E1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0059400 LjG1.1_chr1 8302114 8305198 -
3 domain predictions
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LotjaGi1g1v0059500.1
n.a. 23.2 kDa heat shock protein; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D9UC01|RTM2D_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I1M7E1|I1M7E1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0059500 LjG1.1_chr1 8306889 8308468 -
3 domain predictions
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LotjaGi1g1v0083400.1
n.a. Heat shock protein; TAIR: AT1G53540.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein; TrEMBL-Plants: tr|A0A0K1EUA5|A0A0K1EUA5_TECGR Heat shock protein 1; Found in the gene: LotjaGi1g1v0083400 LjG1.1_chr1 11978746 11979731 -
3 domain predictions
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