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LotjaGi1g1v0701600.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0701600
Transcript ID	LotjaGi1g1v0701600.2
Related isoforms 1	LotjaGi1g1v0701600.1
Lotus japonicus genome version	Gifu v1.2
Description	PfkB family carbohydrate kinase; TAIR: AT4G28706.1 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp\|Q8R1Q9\|RBSK_MOUSE Ribokinase; TrEMBL-Plants: tr\|A0A1J7I8X4\|A0A1J7I8X4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0701600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:127015113..127017989) extracted from Lotus japonicus Gifu genome v1.2.

CTGATGCCAGATGATCTGTCCCATTCAACGTTATTATCTGCATTTGATGAAGCAAGATTAGTTTATTTTGATGGAATGTC TACTGAAACTGCTCTATTTGTTGCACAAGAGGTGATCACCATCCCTGCTCTATTTTGATGAAGCTTTCAGTTTTTTAACC TTTGCTGGACAACTTTTAAGGCTTGCATCAATGATAAATTACTTTCATTGGTTTTCACTTATAAAATTATTCAAGAGGAC AAGGAATCGGGCATAGAGCTTCCCTTTTTTGGGCTTTGGTTGTCTTTTAGGTGGGGTTTTTTTATTTTCACCCAACTTGG TGAATGGGAAAAATAACATTGGGATGGAAAGGATACTCTTAATAAACCAGCCTGGATAAAAATTGTCAGTTCAGGGTACT AGGGGAGGAATGCAATTTTGGAAAGAGTTGTTACCAACAATTTGGTTTTGACTTGATCATTGAATTTTCAAGTACAGGCA GCTCGCAGTAATATTCCTATTTTAGTTGAGGCAGAATCACCCAGGGAAGGGTTGGACGAGCTCCTGAAGCTTGCTGATTT TGCTGTATGCTCAGCTAGGTTTCCACAGGTAAAAGGAGGAACTTATAGCTCACCTTTAATCAACTTATCTTTTGCCCTAC ATGACTATTTGCATTTTGAATTGACTCGGACTGCATAAAATTCACTAGTATGTTGATAGTATGACTTAGTATGAAATCTT TCTGTTCTCAGCTTTCTGAGAAAAGGTAGACATATCAAAGTTCATAGTTTGAAAATACACTTGTGATATTTTCAAAATAT ATCTCTTCTTGCATTTGTTATACATTTACTTTTAACTTATATTTTTTGTCATGATTAGCTTGAATTACCTTTTTGGTCGG TGCTCCTCTAATTATGCGTATGATGTGTCCATATCCATCATCTTATGCTTAGTCCTTTTTGGTTTTGTTTATTTGGGGTT TGTTTTGTACTTGTGTTAGGCTTGGACACAGGCACCCTCTATCCCCAGTGCACTGGTTTCCATGCTTTTAAGATTGCCAA ATATCAAATTTGTGATTGTGACTTTGGGTGCAGATGGTTGTCTAATGTTGGAAAGAAGTACAACTGGTGAACACACCACT AGCTTCTTAAATTTAACTGTTTTACTTTTTGAAGGGTAGTACAATGTGGTAAAATTATCACTTTGAATTGCACTTTTTTC TTCAAGCAAATATAACTTGAAAGTTTAATACTCTTTTGCGCAGAGGATGCTGACATAGAAGAAAGGGATGTAGAGAGCTT CATAGAATTCTTATACAAAGGGAAAGATGATAGTTCGGCTATCCCAACCTGTATATCATCGGTAAAATAATGCTGATCCT AAAACTTCTACAAATTTTATTATTGTGATTTGTGAAGATATATCCTAAATATTCAGCATTGAATATGAAAATGTACTCTT TTTTTAACAAAAGAAGAAATTTATTAAGACAGAAAAATGCCAAAGAGAAAGGAGAACTCTGGCTGATACAGAAAAATTGC AAAGGAATCACTTGATTGATGAATGAGATAGGTTACACATGCTTATATTGTTGAAGTGTTCTTTTTTGGTTTTGCTGTAA ATTGACCTTTTCAACATGACAACACCAACCTCGCTTTATCCTTTAGGCGGAGTCAGTTATATGCTCAATTGACATCTAGA ATCATATCAATTATTCAAGTTAATTACTTTTTTGATAAAATATATTAATTTTACAATATTAATATAAAAATGGCAAATCC ATACCAAATCTGTATGGATTCAATTTTGTTTTTAACTTCATGTAGGTTAAGTGAAGTTAAATGTGTATTAAGTAAGAAAC GGTAAGTCGAAGCATTTTGAAAAATAGAAAATGAAAACGCAATTAGTATTTTCATGGATTATAATACTACTCTAATTTGA CTTAGTTAAATTACAAATATAAATTGGGTGACAGTAACAATAGTTTTCAGTACTAGATTTGACATACATTTTAGATACAC ATAAGTATGCCAAATAGACAAATAGGGATAAATGCAAAAAAAAGAAATGCTCATCTATTTACTTGTTGGTTTTCTCAGGT AGTGGCTAAATTCAGAACAAATGGAATAGGAACAATTTGTGGGAGATTCTTTATTGGAACAGCAGAGAAGATACCAGATT CTGAGCTGGTGGACACAACTGGTGCTGGAGATGCATTTATTGGAGCCATTATTTATGGTAGGGGTAGTTTATGTTTGTTG TACATTTTTTCCATTGTCCCACTTTCTGATACATAAGAAACGGAGAATCTCACTTTTTAAGGTAAAAAATGTCAAAGGAT CTCCTTTGCTCCATTTTCTTAAAGTTGGTGGAAGAGTAACCCAAGCTCACTCGTTTTATGAGATTTATTCATGTGTTTTT GCATTGTTTTAAGAAGATACTCTCCTAATATCTAGACAGAGTAAGCTTAGATTAACAGGTGTTGTACCAAGAGCTCAAAG TTAGTCCTCTAAGAGAAAGGCAGTTGTAAAGTTACATAAATGTCACAATTGTTACTTTTGCACTTTCATATTTGTTTAGT TTTTTTTCTTTGGTGTATTGGACGCTTACACAGGATAATTGATTATGCTCTCTGACTTATTTATAGCTATCTGCGCCAAC ATGGCACCAGAGAAAATGTTGCCGTTTGCTGCTCAAGTGGTAAGTTGCCTAAGTTATATGCTAATCATATTTCCCAGTGG CATTTCTAACAAAGTAAGAAAATCAAATGGTGAAGTTCCTTTTTAAATATTAATTTCATGGTGATGAGTGCAGGCAGCTG TCAAGTGTAGAGCTTTGGGAGCTCGAACTGGTCTTCCACATCGTACGGATCCACACTTGGCATCCTTTATACGATAG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0701600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAGATGATCTGTCCCATTCAACGTTATTATCTGCATTTGATGAAGCAAGATTAGTTTATTTTGATGGAATGTCTAC TGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGCAGTAATATTCCTATTTTAGTTGAGGCAGAATCACCCAGGGAAG GGTTGGACGAGCTCCTGAAGCTTGCTGATTTTGCTGTATGCTCAGCTAGGTTTCCACAGGCTTGGACACAGGCACCCTCT ATCCCCAGTGCACTGGTTTCCATGCTTTTAAGATTGCCAAATATCAAATTTGTGATTGTGACTTTGGGTGCAGATGGTTG TCTAATGTTGGAAAGAAGTACAACTGAGGATGCTGACATAGAAGAAAGGGATGTAGAGAGCTTCATAGAATTCTTATACA AAGGGAAAGATGATAGTTCGGCTATCCCAACCTGTATATCATCGGTAGTGGCTAAATTCAGAACAAATGGAATAGGAACA ATTTGTGGGAGATTCTTTATTGGAACAGCAGAGAAGATACCAGATTCTGAGCTGGTGGACACAACTGGTGCTGGAGATGC ATTTATTGGAGCCATTATTTATGCTATCTGCGCCAACATGGCACCAGAGAAAATGTTGCCGTTTGCTGCTCAAGTGGCAG CTGTCAAGTGTAGAGCTTTGGGAGCTCGAACTGGTCTTCCACATCGTACGGATCCACACTTGGCATCCTTTATACGATAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0701600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPDDLSHSTLLSAFDEARLVYFDGMSTETALFVAQEAARSNIPILVEAESPREGLDELLKLADFAVCSARFPQAWTQAPS IPSALVSMLLRLPNIKFVIVTLGADGCLMLERSTTEDADIEERDVESFIEFLYKGKDDSSAIPTCISSVVAKFRTNGIGT ICGRFFIGTAEKIPDSELVDTTGAGDAFIGAIIYAICANMAPEKMLPFAAQVAAVKCRALGARTGLPHRTDPHLASFIR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR42774:SF1 View details on PTHR42774:SF1 Search for proteins/transripts with this domain View external data on PTHR42774:SF1	1	237	237	6.2E-111	–
PANTHER	PTHR42774 View details on PTHR42774 Search for proteins/transripts with this domain View external data on PTHR42774	1	237	237	6.2E-111	–
SUPERFAMILY	SSF53613 View details on SSF53613 Search for proteins/transripts with this domain View external data on SSF53613	7	230	224	3.42E-30	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00294 View details on PF00294 Search for proteins/transripts with this domain View external data on PF00294	9	116	108	6.6E-9	IPR011611 Show description in modal box View details on IPR011611 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00294 View details on PF00294 Search for proteins/transripts with this domain View external data on PF00294	171	228	58	8.7E-13	IPR011611 Show description in modal box View details on IPR011611 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00584 View details on PS00584 Search for proteins/transripts with this domain View external data on PS00584	180	193	14	-	IPR002173 Show description in modal box View details on IPR002173 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016773 View details of GO:0016773 AmiGO InterPro QuickGO	Molecular function	Phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).	Subterm of View details of GO:0016772

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0701600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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