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LotjaGi1g1v0704200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0704200
Transcript ID	LotjaGi1g1v0704200.1
Lotus japonicus genome version	Gifu v1.2
Description	BED zinc finger,hAT family dimerization domain, putative; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp\|P03010\|TRAC9_MAIZE Putative AC9 transposase; TrEMBL-Plants: tr\|A0A151R7Q2\|A0A151R7Q2_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0704200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:127232356..127234721) extracted from Lotus japonicus Gifu genome v1.2.

CCTAATCAAAATTTGCCTAACATAGTGCCTGAACAAACAATAGGAGGTCGTGGAGATCAGCCGATTAACCAGCCAGCCGT TGCAATTGAAGCTGGTGGAGCTGAGCCTGCTAGAGCTGAACCAGCCCTTCCTCCTATTCCAGAAACTCGTAAGAAGAGGA AGCCAAATGCAAGTGGTTCTAGAAAACAATCACCCTCATGGGACCACTTCACGAGAGTGCCTGATCATGAAGTTCAAGAT CCCACTGCTGCATGTAATTATTGTGGTAAGAGATATCTCTGTGATTCTAAGATTCATGGTACATCAAATCTGGGTGCTCA TACTAGAGTTTGTCCCAAATATCCTTATGCTGTTATCAATGACTCTAGTCAAACAGTCCTATCTTTTAAGCCAGGAGAAG GTAATGATATGGTTGCAGCGAGTCAAAGGTTCAATCTTAAAGCATGTAGGAATGCAGTTGTCATGTTTGTTGTCTTAGAT GAGCATTCATTTTCAAAAGTTGAGGGTGATGGGTTTAAGATTTTGTGTAGAACACTACAGCCACAATTTACTGCCCCTTC AAGGCAAACAGTTGCTAGGGATTGTTTCCAACTATTCCTAGATGAAAAAGTGAAGTTAAAAAAATTCTTTAGAACTGAGT GTAGGAGAGTTGCCCTTACCACTGATTGCTGGACTTCTTGTCTAAACACTGGTTATTTGACCTTAACTGCTCATTTTATT GACAATGAGTGGAACTATCAAAAGAGAATCATTAGTTTTGCCGAAGTTATCAACCACAAAGGGGATACCATAGGTAGGAA AATAGAAGAGATTTTGAGGGATTGAGGACTAAGGAATGTTTCCACTATCACAGTTGATAATGCCTCATCAAACGATGGTG CTGTGTCTTATTTAAAAACAAGATTGAAAAACTTCAATGGGCTTGTGTTAGATGGACAGTTCCTCCATATGAGGTGTTGT GCTCACATCTTGAACTTAGTAGTAAATGACGGGTTGGTAGACCTCAATTCCTCCATTAATAGCATTCGAGGTGCTATTAG GTTTGTGAGGTCTTCATCACAAAGAAAAAATAAGTTTAAGGAGTGCATCCAATTTTCCAATATTTCCTCCAAAAAACTTG TGTGCCTTGATGTTCCAACTAGATGGAACTCAACATATCTAATGCTAGATGCTGCGGAGAAGTTGCAAGTTGCATTTGAA AAGATTGAGTTTGAGGATCGTAACTATGTTCTGCACTTTGACAAACCTCTAACTCCCTAAGAGTATTGATTGGGAGAATG CAAGAGCATTTGTAAGATTTCTTAAGATTTTTTATGATGCCACCAAAATTTTTTCAGCATCTGTGCATTTAAGTATCCAT ACTGCCTTTCATCAACTCTGTTTCATTTATACTGAAATCCTAAATTGTATTGCGAGCCCAAATCCTGTGTTGAGTAAAAT GGGTCAAGAAATGAAGAAGAAGTATGATAAATATTGGGGTAATGTTGAAAATATGAACCAGCTTCTATACTTCGGTGTGA TTCTTGACCCCCGTAACAAGTTGACGTATGTGGAGTGGTCTCTTAGAGAGATGTATCCTGATAACCCGAATTTGGTGAGG CTCTTGTCTGAAAGTATCAAGGAAAATCTGGGTAGAATGTACTCTTGGTATTTGGCAGCACATGAGCAGTCTATTAGGGG TAAACAACAGGCTAATGAAGAAAGTTCAGGTGGAGACAAACCTGTTGCTGCTGAAGCGCCATCACACGTGGCTAGGAGAG CTGCCTTTTTACAACATTTGAAGGAAAAAAATTCAATTGAGGAAAAAAATGAGCTGGAAAGGTATTTGGGTGAAGCTATT GAGAAGTCGGAAGAAAAATTTGATTTACTTTTGTGGTGGAAACATAATAGCTCTCGATTGCCCGTATTATCAATGATGGC TAGAGATGTTTTTGCCACACCTGTTTCCACTGTGGCATCAGAGAGTGCTTTTAGCGCTGGTGGTAGGGTCATTGACATAT TTAGAAGCTCTCTTTCCGCAGAAATGACAGAAGGACTAATTTGTACTCAGAATTGGTTGAGGCCTTGTCGCTTCCAATTC AAAGATCTTGATTTGAGTGATGAGCTTGAAGAATCTGAAAACATTGTGGCTGGTATGTTTTTCAAATTATATTCATCATT TGTAGTTTTTTGTGTTGTTCAGTCTCTTGTATTTTATACGTTGTTTGTCATTGTTTTCAAGAATTGCTAAAACTTGCTGG AACAACAATTGGAGATGGAGATGATGGTCAATCATCTCAATCACAGCCTATGCGCTGTGATTGATAATTTATTGAAGTGT AAGTTACTGTTTAGTGTTTACTTCATTTTTAAGTTCTCTCTCAGTT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0704200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTCAAGAAATGAAGAAGAAGTATGATAAATATTGGGGTAATGTTGAAAATATGAACCAGCTTCTATACTTCGGTGT GATTCTTGACCCCCGTAACAAGTTGACGTATGTGGAGTGGTCTCTTAGAGAGATGTATCCTGATAACCCGAATTTGGTGA GGCTCTTGTCTGAAAGTATCAAGGAAAATCTGGGTAGAATGTACTCTTGGTATTTGGCAGCACATGAGCAGTCTATTAGG GGTAAACAACAGGCTAATGAAGAAAGTTCAGGTGGAGACAAACCTGTTGCTGCTGAAGCGCCATCACACGTGGCTAGGAG AGCTGCCTTTTTACAACATTTGAAGGAAAAAAATTCAATTGAGGAAAAAAATGAGCTGGAAAGGTATTTGGGTGAAGCTA TTGAGAAGTCGGAAGAAAAATTTGATTTACTTTTGTGGTGGAAACATAATAGCTCTCGATTGCCCGTATTATCAATGATG GCTAGAGATGTTTTTGCCACACCTGTTTCCACTGTGGCATCAGAGAGTGCTTTTAGCGCTGGTGGTAGGGTCATTGACAT ATTTAGAAGCTCTCTTTCCGCAGAAATGACAGAAGGACTAATTTGTACTCAGAATTGGTTGAGGCCTTGTCGCTTCCAAT TCAAAGATCTTGATTTGAGTGATGAGCTTGAAGAATCTGAAAACATTGTGGCTGGTATGTTTTTCAAATTATATTCATCA TTTGTAGTTTTTTGTGTTGTTCAGTCTCTTGTATTTTATACGTTGTTTGTCATTGTTTTCAAGAATTGCTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0704200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGQEMKKKYDKYWGNVENMNQLLYFGVILDPRNKLTYVEWSLREMYPDNPNLVRLLSESIKENLGRMYSWYLAAHEQSIR GKQQANEESSGGDKPVAAEAPSHVARRAAFLQHLKEKNSIEEKNELERYLGEAIEKSEEKFDLLLWWKHNSSRLPVLSMM ARDVFATPVSTVASESAFSAGGRVIDIFRSSLSAEMTEGLICTQNWLRPCRFQFKDLDLSDELEESENIVAGMFFKLYSS FVVFCVVQSLVFYTLFVIVFKNC

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	236	236	-	–
Pfam	PF14372 View details on PF14372 Search for proteins/transripts with this domain View external data on PF14372	1	68	68	5.4E-12	IPR025525 Show description in modal box View details on IPR025525 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR23272:SF13 View details on PTHR23272:SF13 Search for proteins/transripts with this domain View external data on PTHR23272:SF13	2	208	207	4.2E-37	–
PANTHER	PTHR23272 View details on PTHR23272 Search for proteins/transripts with this domain View external data on PTHR23272	2	208	207	4.2E-37	–
SUPERFAMILY	SSF53098 View details on SSF53098 Search for proteins/transripts with this domain View external data on SSF53098	5	208	204	6.6E-28	IPR012337 Show description in modal box View details on IPR012337 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05699 View details on PF05699 Search for proteins/transripts with this domain View external data on PF05699	125	207	83	1.7E-26	IPR008906 Show description in modal box View details on IPR008906 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	237	260	24	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	238	260	23	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	261	263	3	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0046983 View details of GO:0046983 AmiGO InterPro QuickGO	Molecular function	Protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.	Subterm of View details of GO:0005515

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0704200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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