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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0707100 |
| Transcript ID | LotjaGi1g1v0707100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ROP interacting CRIB motif protein; TAIR: AT4G28556.1 PAK-box/P21-Rho-binding family protein; Swiss-Prot: sp|Q1G3K8|RIC7_ARATH CRIB domain-containing protein RIC7; TrEMBL-Plants: tr|I3S411|I3S411_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0707100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127549280..127554022) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATTGAAGGGGAAATCATCAACTAGCAAACCAATGCCTCAGAATAACAACATTAAAAGTGGTTGTGCTTGTAAACA GCATTGGTTTGCTGCATTCTTCCCTTTTCTCATCTTAGAAACCTCCATGACACATTTTTCAGATACTGTATCAAGTTTTT GGGCAATTCTTCTATTGGTTCCAATTACATAAGGAAGAAAAAATAGTATAAATATACATTTTTATTTTCATTGGTTGGTT CTCTTATGAACTTTTATTCATTTCAACAATGAATGGATTCCTCAATGCTGGCCTTTCAGAGAGAACTTTCATAGGTGAGA TTCTAAAGCTGTCACAAAATTACTTTTTTGTTCAATTCATCGCGAGACATTAATTTTTGTTGAATTTTTTTTTTAATTTT TGCTAACGGAAATCTAAGCAGACATGAAAATACTTTGGTTTTGCTTTCCCTACAAAAGTTGATTAAAATTGAAATTTATT TTCTCCTTTTCTGGGTCTAACTGATTGTTGAATTCATGTTTTCCAGGTTTTGCAAAAGGTTGAGCAACATATAGGTTTGT GTAATATGGCAACCGACAATAAGGTGAAGAGCCTCCTTAGAGGCCTAAGATTCATTTCTCAGATATTTGGTATATATCAT AATCCTTCCCAGCTTCTTGTAGTTAAATGTTGTATTTCTAGCAAATTTATTTTACCTTTTTTTATTCTCACATATGTAAA GTACTACTCCTATATAGAAGGAAGCAGAATGATGATTAATTAATGGGACATTCACTCATGATTTGCAGATAATAGTGAAA AAGAGCCAGAAATTGAGATTGGTAATCCCACAGATGTAAGGCATGTGGCACATATTGGATTGGATAATCGTGGTCCCACT GAAAACTCTCCCAGCTGGGTAACTCTCTATTTTCTCATTACTTTTCAATTGTTAATTAACATGTTCATACTTGCTGAAGA TTAATCAATAACTATCGAGTATCTTCAGATATAAGTGAAAGTAATTTTTTTTCTCAATCCATAAAGAGCGACTTATTCAT CTTTAATTTCAAAATGAGTGATGACGTATGTTTAGGCAGGTACCTTACAAGTATCTAAACATAGTCTTTAATTATTCTCT TTACTAATCACTTTCCAAAAAGTTAGAAGTGGAAAACTTTTATTGACAAGTATAACTTTTGATATATTGATAGGAAACTT TGCTATATCCTCCAAATAAATAATTTCTCTATAACATCCTCTAAAACAAAGAAAGTGAAAAGATTAACATTAATTAATAT TTCACCAAATGTTGAGACAACACGTTGAAAACAAAAGGGTCGGAGGATGTTTCTCTATGGTAGCACTTGGAAACCAAACA GAACGGGACAGAACAGAACGAAACGGAACAGAACGGGATGGAACGGAACAATAATTACATGTGTTCCGTGTTTGGTAAAT GCAAAATGGACAGAACAGGACCACACGATTAATTACATATATGTCCCTATCATGTTTAATGTTTGAATAATGCATAAAAT AGATTAAATAAAATAACTTTTTCATATATATTATTGTGTACAAATTAACTTGAACCTTAAAAAATTATTTTTATCTTAGT TTATAATAAATTTTTTTAAGAGATTTATAAATTTATGAATAATATATGCATAAATGTTAATTATGAATATAGTTAAACGT GTAATAATTTTATAAATAATATTATTTTATTTTCCTGAAAGAAGTGTGGTACTTATCAATTTAGTTACATAAATTAAATA GTTATATTATTTCTATTTATAATTATATAAATAAATGATAAAACTCAAAATAAAAAGTTAGCAAAACAATAAAACGTAAA AATAGCGTAAACGAATTTTCTTCAAATGAACTAGAATTTGTTCTTCATATTGATATTGATATCTGATGATGAGTTGAATA TATATATATATATATATATATATATATATATATATGTGCAATCTCGTTCCAGATGTTAATTGTGCAGCGAATTAGAAAAA TAATAGTGATAGGAAATTATGTTTTGTGATGATGATGAAGAAAACATAAGAGTTAATTGAATTGATAACGAGATACATAT AATAAATTTTGGGTCAATTTTGTCTTTTGATTGAGTGTTCTGTTCCGTTCCCTTCCGTTCCACCCTTTTTTATGGAACTA AAATGTCTCGTTCCTGAAGCCTCATGTCCTGTTCCGTTCCATCTCAAAAGCATGACAAACACAGAACAAAACCTATATGT CCCGTTCCGTTCCCATATGTATATCAAACGCTACCTATGTTTCCTCTGATTTTTTGAACGAAACAACCTTCGGATCTATT GTTTTCAATACATTGCCATTGTTGTTTGGTGGAGTATTAATTAATGTTAGCTTTCTCACTTTTTTTGTATTGTTTGGACT TTGGAGGATCTTTCAGAAAATTTGTTCGGAAGATATAACAAAGCTCATACCGACAACATTAGATACAATATTGGTGCAAA TTTTACATTCTTAAAAAAAACTTTGGAGCATTATTTCATTTGTTTCAGATGAACGAGTTTAAATCTGTCCCAGGAATTTC ATCTGCACCTGAAAATCACGATGGTGACAATAATTGCAAAGGGTCTGAGAATTCAAGCAAGGTCTCTGCAGGTACTACAC GTTATTATGTTTTCAAGAAATACTACTAACACATTCTTTCAAAGTCTAATTTTAACATACTCATTTTGATTGATTAATTT TCTGAAAAGTTAACACATTTCTCTGACTTTTTAAATATTGTATTGATTTTTAAAATTTTTTTTTTTGAACAAAACAACCA ATAACAATAGGTGTGTTAGAGCATTTCTCTAAAAAAAAATGAATTGTTGGCACTTCTCTAATGAAATGAGTGTTTGACAA GTAATAAATGAATTTAGGCATAATTACCATTTTAGCCATTATACTATAGCTTCTGTGTGGTTTTAGTATTCTTATAATTT CTTCAGCAAATTTACTCCCTCAATGTTTAAGCCCTCAATCGCTTTTATTCTATTTTAAACGCTCAAATTTTAATTTTTTA GGTGAAATCTTAAAACAATATTTTGATTAATCATTGTAAATCTTCTTCTACTCAAAATCCATCAATCAAACTATTGAATT TCACCTTTTTTTTAAATCAAAATTCCTCCGTTCTAAACTCTAATCTCATACACTATAAAATTATTCAAAATTTCTTAATT TTTCACTACATGTCTTACTTCTATGCTTTCAAACTAATATTGTATTTCATATCTATTGTAAATCCTAAAATACTTTACTA GTAAACGATGATTTAAGAAGTTTTGGTATATGAAGAATGATAAAATTACTAAATTTGCTTATTTTTTAAAATGTATAGAA TTACTTAGCTCCAAAAAATTAGGGAGGCTAAAATCAACAAAATCCAATCTAAATGGATTACAAATGCGATCAAGTCTAAC AAATAATTACAAACCATTTGTGACTTGTCATTCTCTTATATCATAGAGCTTACTATATCATAAGTTATGAGTGTTTATCT ATAATCTTATTTGAAAAACTTATATTAAAATAAGTTTAAAAGAACTTATAGTAGATCATAAATTCGTTTTATAGGATTTA ACTAATTTTTTGTTTAAGTACTCCTTATTCAAGTTCAAGTAAGTTTGGAAAAAACACTTTTAAATGCCCTCTAATTCTTC ACCAATCTAACAAGTTGGTTTGGCTTTTTAACTCTCTTTTTCTTTTGTTGAAATTATTCCTACACAGATTCAAGGTCTAT GAATTCTCAAGGTCAAGAGAAAGACTCAACTGAGTTGCCTAAAACATCTAGGCGGCACTCAAATTCCAAAATGAACATAA TAGAGTCCCAAGCAAAGGAAAAATCAGATAGGCCAAAGCATACAAAAAGGTCATCCAAACATTCACAACCCAATAGTGAT TCAGATTATATCCAACTCCAAGGTAGTGGGGAATTGCCACCTACAGGCCTGCCAGAAAGCCCAAAAAAGGGTCGATCAAA GAAGACCAAAGATGCTTCCGGTGGTGGTGACTCGTCCAAAACGAGATCAAAACCCCATTCTAGGGAGCTCAACTCCAATG AAGGGTCTCATTCTAGATCAAGTTCCAAATCTAGGAACAAAAATAGGGCTAATGAAGAAGATGAACAAGTTGAGAGAAGC AACATGAATTCAATGCAGACAAACCAATAAAGATGTATTCACACCCAATACACTCACACATAATAGAGAGAAATGAAAAA TATGATTTGTGATGTGATACAAAAAGAAAAGAGTTAAGGAAAAAAAAATGAGTGAAAAAAATGTGATTATAAATATATCA AAACCCACCACCGACAAACCAAGGGTTCATAGCAGTCAATCATATCTAACCCAACTAAATTGTAAACCACAGTCACCAAT GAAAGGAGAGATCTAGTGAAGAAATATTGAGAAGTCACTCAAACATGAATAATTTTATAATTGGAAATTTGAATGTTTAT AACATTGCTTAGTTAGTAATTGAAAATAGAACATTACCTAGCCTCACCCCCCCTAAAAAATTGTGTAATACATCTTAGTG TTTTACTTTTCTTCAATTATAAATGTACATGTATGTATTCATGTAGTTAATGTTACTAAGGTATTAAACTATCAATTCTC CGAGTGTGTTTGAAAAAAAAAATCACCAGACTCTTACTTGTCTTTTTAAGTTAAGGAGTGTCTTTTGCTTTGTCGTTCTT TTGATTATGTGAATTTTTCTTTT
CDS sequence (LotjaGi1g1v0707100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCGACAATAAGGTGAAGAGCCTCCTTAGAGGCCTAAGATTCATTTCTCAGATATTTGATAATAGTGAAAAAGA GCCAGAAATTGAGATTGGTAATCCCACAGATGTAAGGCATGTGGCACATATTGGATTGGATAATCGTGGTCCCACTGAAA ACTCTCCCAGCTGGATGAACGAGTTTAAATCTGTCCCAGGAATTTCATCTGCACCTGAAAATCACGATGGTGACAATAAT TGCAAAGGGTCTGAGAATTCAAGCAAGGTCTCTGCAGATTCAAGGTCTATGAATTCTCAAGGTCAAGAGAAAGACTCAAC TGAGTTGCCTAAAACATCTAGGCGGCACTCAAATTCCAAAATGAACATAATAGAGTCCCAAGCAAAGGAAAAATCAGATA GGCCAAAGCATACAAAAAGGTCATCCAAACATTCACAACCCAATAGTGATTCAGATTATATCCAACTCCAAGGTAGTGGG GAATTGCCACCTACAGGCCTGCCAGAAAGCCCAAAAAAGGGTCGATCAAAGAAGACCAAAGATGCTTCCGGTGGTGGTGA CTCGTCCAAAACGAGATCAAAACCCCATTCTAGGGAGCTCAACTCCAATGAAGGGTCTCATTCTAGATCAAGTTCCAAAT CTAGGAACAAAAATAGGGCTAATGAAGAAGATGAACAAGTTGAGAGAAGCAACATGAATTCAATGCAGACAAACCAATAA
Protein sequence (LotjaGi1g1v0707100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATDNKVKSLLRGLRFISQIFDNSEKEPEIEIGNPTDVRHVAHIGLDNRGPTENSPSWMNEFKSVPGISSAPENHDGDNN CKGSENSSKVSADSRSMNSQGQEKDSTELPKTSRRHSNSKMNIIESQAKEKSDRPKHTKRSSKHSQPNSDSDYIQLQGSG ELPPTGLPESPKKGRSKKTKDASGGGDSSKTRSKPHSRELNSNEGSHSRSSSKSRNKNRANEEDEQVERSNMNSMQTNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 213 | 210 | 2.0E-45 | – | |
| PANTHER | 4 | 213 | 210 | 2.0E-45 | – | |
| Gene3D | 26 | 76 | 51 | 1.1E-5 | ||
| CDD | 30 | 64 | 35 | 5.42125E-5 | – | |
| Pfam | 31 | 74 | 44 | 2.7E-8 | ||
| ProSiteProfiles | 32 | 45 | 14 | 8.908 | ||
| SMART | 32 | 65 | 34 | 4.4E-5 | ||
| MobiDBLite | 43 | 239 | 197 | - | – | |
| MobiDBLite | 50 | 64 | 15 | - | – | |
| MobiDBLite | 73 | 106 | 34 | - | – | |
| MobiDBLite | 171 | 203 | 33 | - | – | |
| MobiDBLite | 215 | 229 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0707100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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